mRNA_M-pyrifera_M_contig12121.4371.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12121.4371.1
Unique NamemRNA_M-pyrifera_M_contig12121.4371.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig12121.4371.1 vs. uniprot
Match: D7FZG1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZG1_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 1.800e-35
Identity = 65/73 (89.04%), Postives = 68/73 (93.15%), Query Frame = 2 
Query:   74 MSQATTFWRLAGMTYLEYASKATSVMRGALKEPARTTAMARGAAKYNRNVFVGGVPQGKLPVASLKEASATSA 292
            MSQATTFWRLAGMTYLEYASKAT+VMRGALKEPAR+TA+AR A  YNRNVFVGG PQGKLPVASLKEA ATSA
Sbjct:    1 MSQATTFWRLAGMTYLEYASKATTVMRGALKEPARSTALAREAVGYNRNVFVGGQPQGKLPVASLKEAGATSA 73
[Close]
BLAST of mRNA_M-pyrifera_M_contig12121.4371.1 vs. uniprot
Match: A0A835YQS1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQS1_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.170e-14
Identity = 37/65 (56.92%), Postives = 45/65 (69.23%), Query Frame = 2 
Query:   83 ATTFWRLAGMTYLEYASKATSVMRGALKEPARTTAMARGAAKYNRNVFVGGVPQGKLPVASLKEA 277
            ATTFWR+AG++YLEYA+  T+ +R  LKEP R+ AM R A  YNR VF  GV   K PV SL +A
Sbjct:    6 ATTFWRIAGLSYLEYAAATTTALRMGLKEPMRSKAMTRNAVSYNRAVFKDGVSGAKKPVKSLADA 70
[Close]
BLAST of mRNA_M-pyrifera_M_contig12121.4371.1 vs. uniprot
Match: A0A1Z5K8B7_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K8B7_FISSO)

HSP 1 Score: 68.9 bits (167), Expect = 3.710e-13
Identity = 35/64 (54.69%), Postives = 46/64 (71.88%), Query Frame = 2 
Query:   86 TTFWRLAGMTYLEYASKATSVMRGALKEPARTTAMARGAAKYNRNVFVGGVPQGKLPVASLKEA 277
            TTFWR+AGM+YL+Y +KA   MR  LKEPA+T AMA+ A  YN  V+  G    KLPVA++++A
Sbjct:    7 TTFWRVAGMSYLQYINKAAGTMRSVLKEPAKTRAMAQEAYGYNAAVWEAGKQGPKLPVANIQQA 70
[Close]
BLAST of mRNA_M-pyrifera_M_contig12121.4371.1 vs. uniprot
Match: B7G8W9_PHATC (Predicted protein n=4 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G8W9_PHATC)

HSP 1 Score: 66.2 bits (160), Expect = 1.750e-11
Identity = 35/71 (49.30%), Postives = 47/71 (66.20%), Query Frame = 2 
Query:   77 SQATTFWRLAGMTYLEYASKATSVMRGALKEPARTTAMARGAAKYNRNVFVGGVPQGKLPVASLKEASATS 289
            S  TTFWR+AGM+YL+Y +KA + MRGALKEPA+  AM + A  Y  + +  G    K+PV  L ++ ATS
Sbjct:   60 SPVTTFWRMAGMSYLQYVNKAATSMRGALKEPAQRKAMEQEAFAYKVSTWQDGKQSPKVPVDVLAQSGATS 130
[Close]
BLAST of mRNA_M-pyrifera_M_contig12121.4371.1 vs. uniprot
Match: A0A448YV42_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YV42_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 6.010e-9
Identity = 25/65 (38.46%), Postives = 43/65 (66.15%), Query Frame = 2 
Query:   83 ATTFWRLAGMTYLEYASKATSVMRGALKEPARTTAMARGAAKYNRNVFVGGVPQGKLPVASLKEA 277
            +TT+WR+AGMTYL+Y ++A   +R  LKEP ++  +A+   KYN + +  G+   K  +++L +A
Sbjct:    5 STTYWRIAGMTYLQYVNRAAGAVRSGLKEPTKSKLLAQSEFKYNASAWESGIQGAKKEISALGQA 69
[Close]
BLAST of mRNA_M-pyrifera_M_contig12121.4371.1 vs. uniprot
Match: A0A1E7ER17_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ER17_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 8.500e-9
Identity = 27/65 (41.54%), Postives = 40/65 (61.54%), Query Frame = 2 
Query:   83 ATTFWRLAGMTYLEYASKATSVMRGALKEPARTTAMARGAAKYNRNVFVGGVPQGKLPVASLKEA 277
            AT FWR+AGM+YL+Y ++A   +R ALKEP ++   A+G   Y  + +V G    K  + SL +A
Sbjct:    5 ATNFWRIAGMSYLQYVNRAAGSVRSALKEPMKSKLSAQGEFSYKASAWVDGTQMSKTEITSLSQA 69
[Close]
BLAST of mRNA_M-pyrifera_M_contig12121.4371.1 vs. uniprot
Match: W7U8A3_9STRA (Atp synthase subunit epsilon n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U8A3_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 3.470e-8
Identity = 34/68 (50.00%), Postives = 44/68 (64.71%), Query Frame = 2 
Query:   83 ATTFWRLAGMTYLEYASKATSVMRGALKEPARTTAMARGAAKYNRNVF---VGGVPQG--KLPVASLK 271
            ATT+WR+AG+TYL+Y SKA  V+R ALKEP RT  MA+    + R  +   + G P G  K+ V SLK
Sbjct:    5 ATTYWRIAGLTYLQYTSKAAGVLRAALKEPLRTKTMAKEKIFFKRLEWSPKMIGQPVGPLKVEVTSLK 72
[Close]
BLAST of mRNA_M-pyrifera_M_contig12121.4371.1 vs. uniprot
Match: A0A7S3L8J2_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L8J2_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.680e-7
Identity = 26/61 (42.62%), Postives = 40/61 (65.57%), Query Frame = 2 
Query:   86 TTFWRLAGMTYLEYASKATSVMRGALKEPARTTAMARGAAKYNRNVFVGGVPQGKLPVASL 268
            TTFWR+AG++YL+Y +KA S +RGALKEPA++    +    + ++ + GGV   K  V  +
Sbjct:   50 TTFWRMAGLSYLQYVNKAASTIRGALKEPAKSRLAVQDTFSFKKSSWSGGVQGPKTEVTRM 110
[Close]
BLAST of mRNA_M-pyrifera_M_contig12121.4371.1 vs. uniprot
Match: A0A8K1CSI8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CSI8_PYTOL)

HSP 1 Score: 48.9 bits (115), Expect = 2.660e-5
Identity = 24/67 (35.82%), Postives = 46/67 (68.66%), Query Frame = 2 
Query:   80 QATTFWRLAGMTYLEYASKATSVMRGALKEPARTTAMARGAAKYNRNVFVGGVPQGKLPVASLKEAS 280
            + T+F+R+AG++YL+Y +K+ +V+R ALKEP ++ A+AR   ++    +  G    ++ V S+K+A+
Sbjct:    4 KGTSFFRVAGLSYLQYVNKSAAVLREALKEPVKSKAVARSKVEFATFKWADGERGKRVDVDSIKKAA 70
[Close]
BLAST of mRNA_M-pyrifera_M_contig12121.4371.1 vs. uniprot
Match: I0YYI8_COCSC (Uncharacterized protein n=2 Tax=Coccomyxa TaxID=41891 RepID=I0YYI8_COCSC)

HSP 1 Score: 47.8 bits (112), Expect = 7.780e-5
Identity = 25/70 (35.71%), Postives = 42/70 (60.00%), Query Frame = 2 
Query:   83 ATTFWRLAGMTYLEYASKATSVMRGALKEPARTTAMARGAAKYNRNVFVGGVPQGKLPVASLKEASATSA 292
            A+++WR+AGM+YL+Y++    ++R +LKEP +T A  R A  +   V+  G P+ K  +  L +A    A
Sbjct:    7 ASSYWRVAGMSYLKYSNLCADMLRSSLKEPMKTKAKLREAVYFRAAVWKDGKPE-KQVITDLTDAGLEQA 75
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12121.4371.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FZG1_ECTSI1.800e-3589.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YQS1_9STRA1.170e-1456.92Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1Z5K8B7_FISSO3.710e-1354.69Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
B7G8W9_PHATC1.750e-1149.30Predicted protein n=4 Tax=Phaeodactylum tricornutu... [more]
A0A448YV42_9STRA6.010e-938.46Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A1E7ER17_9STRA8.500e-941.54Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
W7U8A3_9STRA3.470e-850.00Atp synthase subunit epsilon n=2 Tax=Monodopsidace... [more]
A0A7S3L8J2_9STRA1.680e-742.62Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A8K1CSI8_PYTOL2.660e-535.82Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
I0YYI8_COCSC7.780e-535.71Uncharacterized protein n=2 Tax=Coccomyxa TaxID=41... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12121contigM-pyrifera_M_contig12121:560..5364 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionATPase, F1 complex, epsilon subunit, mitochondrial
Ec32 orthologEc-19_003180.1
Exons3
Model size362
Cds size222
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12121.4371.1prot_M-pyrifera_M_contig12121.4371.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12121 627..5291 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815731.7551146-UTR-M-pyrifera_M_contig12121:559..6261622815731.7551146-UTR-M-pyrifera_M_contig12121:559..626Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12121 560..626 -
1692277543.100179-UTR-M-pyrifera_M_contig12121:559..6261692277543.100179-UTR-M-pyrifera_M_contig12121:559..626Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12121 560..626 -
1622815731.8172104-UTR-M-pyrifera_M_contig12121:5291..53641622815731.8172104-UTR-M-pyrifera_M_contig12121:5291..5364Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12121 5292..5364 -
1692277543.1390967-UTR-M-pyrifera_M_contig12121:5291..53641692277543.1390967-UTR-M-pyrifera_M_contig12121:5291..5364Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12121 5292..5364 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815731.7676742-CDS-M-pyrifera_M_contig12121:626..6701622815731.7676742-CDS-M-pyrifera_M_contig12121:626..670Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12121 627..670 -
1692277543.1102564-CDS-M-pyrifera_M_contig12121:626..6701692277543.1102564-CDS-M-pyrifera_M_contig12121:626..670Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12121 627..670 -
1622815731.7804434-CDS-M-pyrifera_M_contig12121:1517..16441622815731.7804434-CDS-M-pyrifera_M_contig12121:1517..1644Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12121 1518..1644 -
1692277543.1208172-CDS-M-pyrifera_M_contig12121:1517..16441692277543.1208172-CDS-M-pyrifera_M_contig12121:1517..1644Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12121 1518..1644 -
1622815731.7990067-CDS-M-pyrifera_M_contig12121:5240..52911622815731.7990067-CDS-M-pyrifera_M_contig12121:5240..5291Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12121 5241..5291 -
1692277543.131436-CDS-M-pyrifera_M_contig12121:5240..52911692277543.131436-CDS-M-pyrifera_M_contig12121:5240..5291Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12121 5241..5291 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12121.4371.1

>prot_M-pyrifera_M_contig12121.4371.1 ID=prot_M-pyrifera_M_contig12121.4371.1|Name=mRNA_M-pyrifera_M_contig12121.4371.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=74bp
MSQATTFWRLAGMTYLEYASKATSVMRGALKEPARTTAMARGAAKYNRNV
FVGGVPQGKLPVASLKEASATSA*
back to top

mRNA from alignment at M-pyrifera_M_contig12121:560..5364-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12121.4371.1 ID=mRNA_M-pyrifera_M_contig12121.4371.1|Name=mRNA_M-pyrifera_M_contig12121.4371.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4805bp|location=Sequence derived from alignment at M-pyrifera_M_contig12121:560..5364- (Macrocystis pyrifera P11B4 male)
CCAGCCCAGACATAGGAGCGTGAGACGTCCCAGTTAGTACCACACACATA
GCCGTGCGAAAGGAGCAGGAAATATGTCTCAGGCAACGACCTTCTGGCGG
TTGGCGGGCATGACCTACCTCGAGGTGAGCACGCTTCGTCGCAAGGAACC
CTGCCCAGTGTGTGTGACTTCCATGTATCACTGCTGTAGCAGGGGTGGAG
GGTGCAACAGCAGCAGCAGCAGCAGCAGCACCGGTGTTGGCGAACTCTGC
GATCTCGCCCCGATATGTCTCCTCTGCAACCAGAGGAAACCTTCCCCTAA
AGTTGCGTTGGAATCGATTGCCTCCTCCGCTGCGTGTGCGAAGCTTGTCC
GCGTCCGGGCATTTGTTTCAAGCCAGAATTGGGCTGATCTCTCGTTATCT
CCACGAACAGACTTGTTTTTCGTCTGTGATACACAACACAGGACCTCCCA
CCTCCCACACAGCAGTACTGGTTGCCTTGAGCCCTTTTGAGACCCGAGGG
GATTGGCTGAGTAGGGGATGTGAAATGAACACTGCTATCTCGCGAGAAAA
TCGCACAGCTTGAGCATGCCGTCCCTGAAGCCTGTATGTTTCCGTGTGCA
CATCAAGGCAACAATCAAGACAACAGGAACAGAGACCCAGAGAGCACATA
TCGGCCCTATTGCAGTAATCCCAGTAATCCCGGTCGTTTTTCGGCTGTAG
TCGCCGGCAAAAGAATGTACTGCTGTAGGTACGTACTGCTGTGGTACCGC
TGTCGTACGCGTGTCGCGAGCAGACAGCACGCGCTCTCGAAAGTGGAGCT
CGATTGCATCCCAAACCCGTGCCGCCTCTCAAGATTATGAGATTTGCACG
TTGATACGCTTGCAGGCACACTGTACGGCAGTACCCGGTACCATTAACTT
GCTGTCTGCTGCGCTGCTGTGCCATAATACAGCAGTGTCCGGGGTCTGGT
GGCCTTAATTGCAAGACCACCTTGCAATTGTACTCCTGCTGCAGCACAAT
CGTGTGATTGATCGAGGCCGGTCGTTTTTTTCACTAATGCGACCATCCCC
GCAGGCACTGGGCCAAGGGATAGGTACACAGTTATGACTTAGCCTGAAAC
AACGTAAAAACATTCTAGACTTTTCGAGCTTGCACCAATCAAAGCAGAGC
TATGACTTGCTTTATGACTTGCAAAATGGCCGTGATTGGCCAACAGTGCC
GTTACAACTGCTGCTGAGCACAAACATCGTATTGTTGAGCGTGCTACGAG
TACAACAAGCAGGCTGTTGTACATCGCTGCGGCCATGCCGCCCAGCAGCA
GCAGCAGGCAAAACCATGCGCGTGAGGTGGCACATCCGCAGTAGTATACT
CTATGGCTTGTATCGGGGCCTGCGATGCATCACGGAGGATGGATAGGTAT
AGAGTTTGGGGTGCGGGCGCATGTATGTATCCCGACTCCCGACCACACCC
ACCACGACGACCAACAAACAACCGCCACATGCTGTTGTTGCCCAGCAGCA
TAGTAACAGGCCAAACCAGCGCGTGAGGTGCACATCCGCGGTGTACTCTT
GGCTACTGTACCTGTAGTTGCAAGTGTTGGAGCCTACGACGCATCATCGA
GGATAGATATTAGGCATAGCTTGGTGTGCGGGGGCATGTATGTAACCCGA
CCGAACACGCCCACCGATCAACAACCAACTATAATAACTGCCACCAGGCA
AAACTGCGTGAGGTGACGCATCCGGGGTGTACTCTTGGCTACTACTACTG
TACCTGTAGTTGCAAGTGTCGGAGCCTATGATGGATCATCGAGGATAAAT
AGGAAGAGCTTGGGGTGCGGGCGTATGTATGTATGTATAGTATCCATGTA
TCCTAACTCCCGACCACGCCCACCACAACGATCAACGATCAACTGCCACC
AGACGAAACTACTCATCCTCCAGCAGCAGCAGGCACCCAGCAGCACACCA
GCAGCAAGCAAAATCATGCGCGTACGGTGGCACATCCGGGGTGTAAATTA
TGACTAGTTGCATGTATCGGAGCCTACGATGCAGCACCGTCGCTCGTCTG
AAGGATTTACACTTCATTGTGGCATACTGCTGCTGCGGTGTTGTTCCAGC
TTCGGCAACAACACCAGCTACGCTCTATACAAGCACGTCGGTATGTTGCT
GTTAATACTGTTCAACACTACTGCTGTTGTCTGTCGGTCAATGAGTATGA
ATGTATGCGTACGATACTGCTGTCTGCGTACTCGTAGCACGACTTAATTT
GAGCTACCGTATCCGTACACAGCAAGCTCAAATGTTGGCTGACCCGGTCT
GAAAGCATGGGCTACCTTAGCTGCCTGGTACTGATATGACGGTTATGTTC
CATCTCGTAAGGTCTGGAGACACCACGTACTGACTGTAGATATGCCCAAC
CGTCAACCTGTGGTGCTTCTATCCGTATTTTGGATCCTCGCCACTGCCAT
ATGGCACCAGGTGCCAGGTATCACAGACGGCGAAGACGTGTGCTTGGTGG
AATATGAACGTGGAGTTGGTGTTTCGCTGACTGCTGTCTTGGTGCTCTTG
GTAGAAGTAGCGGTAGCGGTGCAGACGTCGGCAGCGACAGGGCGGGCCAA
CGCCCCCTCCGAGTCGCCGCTGGCAGCCAGCCCCACAGAGCTACTTCCGG
CTAAATGTGCGGTGGATCTATGTATGTCAGTACAGCTGTGCTGCGTTAGC
TGGAGGCGCGTTGGCGTCGGAAAACACACAACCCGGAGCTCGTATTCCTT
GTCAGCGGCAGCCCGCCCTCTCCTGCAGACGCCGGGTTTATGGAAATCGC
TCGTGTACGAAACTGCTCTCGCAATCAGTGATGCAAAAGCACGACCGCTG
TTACAGGCAGGCAATACTGCTGCACACATCATACAGACATTCAAATTGAG
AATGGAAGCCTATACCCACCCGCAATGATGAGGTTCTGTGCAAGATAGAT
AGCGGCGACCTCTCTAACAGCAGTTGTCACACGAGTAGTCGTGTGCAGCA
GCTTGATGGGGAAGCTGCTTCGAATACGCTACATTCTCAAAACAATCTGG
CATCGTGACGTACCACCAGTATCACAGCAGTAGTATTAATAGTAGTGTTT
TCGCCCCGTCGTCCTATTCTAGTCTCCAAAAGGATGAGAAGCCAGTTTAG
TATTTTCCTTACGTGCTCGGGACATACATGTCGTCACTTTTTTTCAAGTT
CGGGGTTGAACTTCAGATCAGAGTTTTTTTTCAGGGCGAGGGTTGTGTCG
ACTTGGGGTCTAAAAGGCTAAAGACGCATAAATAGCGAGAGGCACCACCC
TGGGTCGACAAGTCACGGCGGACGTGAAAATTAGATTTTAGCGAGAAAGT
CTGGGACGCGATTCGTGTTTCTCGAAAGCGTTAATATTTCCGTTCGCCCT
GCATTTAATTCAGCTTTTTGATCTCGTATAGTGCCATATCTGGTGTCTGG
ATGAGCGTCGCCAAACCGACGGCACCCCTAGCAATACTCTTGCACGCGCA
GCCCCCGTTCTCACCCCCCCCCCCCAAAGGGGTGCGTGGTCCATAGTCAA
ATGACTAAGGCAAGCAACAAATGAGTACGCCCCCTCCCCCCCCTCCCCCC
CACCCCTCTTTTCCCCTACGGCACCCCCTCCTATTGTGGAAAACCGTGTG
TTTTTGCCGTACTGGGGATTTTGCCGCTCGCCTTTTCATGGATTGGTGGA
TCGATTGATGAATTCATCAGTACGCCAGCAAGGCCACCTCGGTGATGCGC
GGCGCCCTCAAGGAGCCCGCCCGCACGACCGCGATGGCCAGGGGAGCCGC
GAAATACAACCGCAACGTGTTCGTCGGCGGCGTGCCCCAGGGAAAACGTG
AGTCACTGCATACCTGGTATGATACTACCTAATGCTGTCATGTCATGCAC
CCGATTGGGTTTTGGTTTGGTTTTTGATTCCTATTAAGGCCTTCCTGTAG
ACTCCTGGCGCATTCTCTTGAATACGGGCTAGATTTTTGGGAATGAGCTA
ATCGGGCTCTCCCCACAGCACCTGTTCAGTGAAACCGGACTGTTATTAAT
AGTAAGTTTGTGGAATCGGGGAGTAGGGGGGCTCGCTTGCGAATCGGCTT
GAAAAAACGCTTTGATGTGCATGCGTGCGCGCCGATGGTTTATATAAAGT
CTTGCGTTTCTGTTGCGCAGCCACATACCCCGGTATGAGCTGCTGCTGTG
CCACCTCTCGCGCACGCCTCTGGTGCGATACGAGAACACGATGAAGCGAA
AACGACAGCGAAAACTAATTCGAAAGTAACACGAGAACGGAAGCGGACAT
GAAAACGAAGGAACTGGGACCTCACCAAAAGGAGGGGAACACACAAGTGA
TAGATGCCTCGAAAGCCTCTTTGCATGTGTAGGGGCGCGTTCCTTGTCAG
CGTTAGTGATAGCTCTAGCGTTAGCGTTAGCGTTAGCGCCAGCGTTAGCG
CTAGCGTCAGCGTCAGCGCTAGCGTCAGAGTCAACGTAAACGTATGCGCG
ATTAGTGACTGTCAGGTAGTGATTTGTGGTTCCCTGTACGTCATTACTGA
CCGGTTGGTGATTTTCTTCACTGATCCCGCTCCGCTGCCCATCGCACTTT
CCCCGGATCGTTTCCGCTTTTGTGTGTGTGTTTGTGTTTTTGCCTTCGCT
GCCGCCGCCGCCGTCCCGTCTGCCCCGTCCGCTTCCATCTGCAGTGCCTG
TTGCTTCGTTGAAGGAGGCTAGCGCAACCTCGGCGTAGGCAAACCTCCCA
GGGAACTTAGGGGGGGAAAGTGGAGAGGACGGCGGCGGCGGTGGGGGGGA
CGGGG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig12121:560..5364-

>mRNA_M-pyrifera_M_contig12121.4371.1 ID=mRNA_M-pyrifera_M_contig12121.4371.1|Name=mRNA_M-pyrifera_M_contig12121.4371.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig12121:560..5364- (Macrocystis pyrifera P11B4 male)
ATGTCTCAGGCAACGACCTTCTGGCGGTTGGCGGGCATGACCTACCTCGA
GATGTCTCAGGCAACGACCTTCTGGCGGTTGGCGGGCATGACCTACCTCG
AGTACGCCAGCAAGGCCACCTCGGTGATGCGCGGCGCCCTCAAGGAGCCC
GCCCGCACGACCGCGATGGCCAGGGGAGCCGCGAAATACAACCGCAACGT
GTTCGTCGGCGGCGTGCCCCAGGGAAAACTACGCCAGCAAGGCCACCTCG
GTGATGCGCGGCGCCCTCAAGGAGCCCGCCCGCACGACCGCGATGGCCAG
GGGAGCCGCGAAATACAACCGCAACGTGTTCGTCGGCGGCGTGCCCCAGG
GAAAACTGCCTGTTGCTTCGTTGAAGGAGGCTAGCGCAACCTCGGCGTAG
TGCCTGTTGCTTCGTTGAAGGAGGCTAGCGCAACCTCGGCGTAG
back to top