mRNA_M-pyrifera_M_contig121170.4362.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121170.4362.1
Unique NamemRNA_M-pyrifera_M_contig121170.4362.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121170.4362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121170contigM-pyrifera_M_contig121170:14..428 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.8
Seed ortholog evalue4.5e-07
Seed eggNOG ortholog5693.XP_806690.1
KEGG rclassRC00911
KEGG koko:K01824
KEGG ReactionR03353,R04804,R07484
KEGG Pathwayko00100,ko01100,ko01110,map00100,map01100,map01110
KEGG ModuleM00101
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Emopamil binding protein
EggNOG OGs2C2V9@1,2SCUN@2759,3XY3V@5653
EC5.3.3.5
COG Functional cat.I
Best tax levelKinetoplastida
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons2
Model size351
Cds size336
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121170.4362.1prot_M-pyrifera_M_contig121170.4362.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121170 14..413 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815731.3033953-CDS-M-pyrifera_M_contig121170:13..3021622815731.3033953-CDS-M-pyrifera_M_contig121170:13..302Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121170 14..302 -
1692277542.8668506-CDS-M-pyrifera_M_contig121170:13..3021692277542.8668506-CDS-M-pyrifera_M_contig121170:13..302Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121170 14..302 -
1622815731.3167934-CDS-M-pyrifera_M_contig121170:366..4131622815731.3167934-CDS-M-pyrifera_M_contig121170:366..413Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121170 367..413 -
1692277542.877919-CDS-M-pyrifera_M_contig121170:366..4131692277542.877919-CDS-M-pyrifera_M_contig121170:366..413Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121170 367..413 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815731.3295605-UTR-M-pyrifera_M_contig121170:413..4281622815731.3295605-UTR-M-pyrifera_M_contig121170:413..428Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig121170 414..428 -
1692277542.8877099-UTR-M-pyrifera_M_contig121170:413..4281692277542.8877099-UTR-M-pyrifera_M_contig121170:413..428Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig121170 414..428 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121170.4362.1

>prot_M-pyrifera_M_contig121170.4362.1 ID=prot_M-pyrifera_M_contig121170.4362.1|Name=mRNA_M-pyrifera_M_contig121170.4362.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=112bp
MNAFLIHILCDYTSGVIKELPLLRDRYEILDSRFRSDVPGAATELVDLVA
ILEGVVEAPLCVISFLAMRGNWKSAPAWELATLSMQLFGTFIFVGEDLMR
GLANQHPERGMT
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mRNA from alignment at M-pyrifera_M_contig121170:14..428-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121170.4362.1 ID=mRNA_M-pyrifera_M_contig121170.4362.1|Name=mRNA_M-pyrifera_M_contig121170.4362.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=415bp|location=Sequence derived from alignment at M-pyrifera_M_contig121170:14..428- (Macrocystis pyrifera P11B4 male)
GCGAACTGGTACCTGATGAACGCCTTCCTCATCCACATCCTCTGTGACTA
CACCTCTGGCGTGTGCGTATTCCCCTGTTCACTGTCTGTCGATCCATCCT
CTCACCCGTGCGCTTCCTGCTCGCAGGATCAAGGAGCTTCCCCTGCTGCG
TGACAGGTACGAGATTCTGGACTCGCGCTTCCGCTCTGATGTCCCGGGGG
CGGCGACCGAGTTGGTGGATCTGGTGGCCATTCTCGAAGGCGTGGTGGAA
GCGCCTCTGTGCGTCATCTCTTTCCTCGCCATGCGTGGCAACTGGAAGTC
TGCGCCTGCTTGGGAGCTGGCTACGCTGTCTATGCAGCTGTTCGGCACGT
TCATCTTTGTTGGCGAGGACCTCATGCGCGGCTTGGCCAACCAGCACCCG
GAGCGCGGCATGACC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121170:14..428-

>mRNA_M-pyrifera_M_contig121170.4362.1 ID=mRNA_M-pyrifera_M_contig121170.4362.1|Name=mRNA_M-pyrifera_M_contig121170.4362.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig121170:14..428- (Macrocystis pyrifera P11B4 male)
ATGAACGCCTTCCTCATCCACATCCTCTGTGACTACACCTCTGGCGTATG
AACGCCTTCCTCATCCACATCCTCTGTGACTACACCTCTGGCGTGATCAA
GGAGCTTCCCCTGCTGCGTGACAGGTACGAGATTCTGGACTCGCGCTTCC
GCTCTGATGTCCCGGGGGCGGCGACCGAGTTGGTGGATCTGGTGGCCATT
CTCGAAGGCGTGGTGGAAGCGCCTCTGTGCGTCATCTCTTTCCTCGCCAT
GCGTGGCAACTGGAAGTCTGCGCCTGCTTGGGAGCTGGCTACGCTGTCTA
TGCAGCTGTTCGGCACGTTCATCTTTGTTGGCGAGGACCTCATGCGCGGC
TTGGCCAACCAGCACCCGGAGCGCGGCATGACCGATCAAGGAGCTTCCCC
TGCTGCGTGACAGGTACGAGATTCTGGACTCGCGCTTCCGCTCTGATGTC
CCGGGGGCGGCGACCGAGTTGGTGGATCTGGTGGCCATTCTCGAAGGCGT
GGTGGAAGCGCCTCTGTGCGTCATCTCTTTCCTCGCCATGCGTGGCAACT
GGAAGTCTGCGCCTGCTTGGGAGCTGGCTACGCTGTCTATGCAGCTGTTC
GGCACGTTCATCTTTGTTGGCGAGGACCTCATGCGCGGCTTGGCCAACCA
GCACCCGGAGCGCGGCATGACC
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