mRNA_M-pyrifera_M_contig121164.4357.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121164.4357.1
Unique NamemRNA_M-pyrifera_M_contig121164.4357.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig121164.4357.1 vs. uniprot
Match: A0A3D2Z1J5_9BACT (Uncharacterized protein n=1 Tax=Candidatus Latescibacteria bacterium TaxID=2053570 RepID=A0A3D2Z1J5_9BACT)

HSP 1 Score: 99.4 bits (246), Expect = 1.340e-21
Identity = 69/168 (41.07%), Postives = 89/168 (52.98%), Query Frame = 1
Query:    1 LGLTSRAVGVVLSANRWVRLWSNAPAKALLERLPIGLSLSATLLVAAVCSVAYA-VAWPLAAMTLSSIPVFTVLLAARLAWGCCWSIIRYSGLWTCSDSIRHGFGRPEAMGRIVGLYDGFTRFGSVFGNVFGAMLFDLLHWPACFGLLALASAIMFPLGYLSRRGLPE 501
            LGL    VGV+LSANR VRL +N  A+    R  +   L   L+  A+ ++AY  VAW            F  LLAAR+ WG CWS IR  GL T  D+          +GR +G Y G +R GS+ GN+ GA+  DLL + +   + A AS +  PLG LSR GLP 
Sbjct:   26 LGLQPYQVGVLLSANRIVRLVTNHLAEQGSRRWSLAWLLVVALVTGALLNIAYGMVAW------------FPGLLAARILWGVCWSFIRQIGLMTVVDAAAESPTGSAHLGRAMGFYSGISRLGSISGNLLGALGHDLLGFSSTLFIFAAASLVCVPLGPLSRAGLPR 181          
BLAST of mRNA_M-pyrifera_M_contig121164.4357.1 vs. uniprot
Match: A0A2E7ZM18_9DELT (MFS domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2E7ZM18_9DELT)

HSP 1 Score: 98.6 bits (244), Expect = 2.710e-21
Identity = 61/156 (39.10%), Postives = 87/156 (55.77%), Query Frame = 1
Query:    1 LGLTSRAVGVVLSANRWVRLWSNAPAKALLERLPIGLSLSATLLVAAVCSVAYAVAWPLAAMTLSSIPVFTVLLAARLAWGCCWSIIRYSGLWTCSDSIRHGFGRPEAMGRIVGLYDGFTRFGSVFGNVFGAMLFDLLHWPACFGLLALASAIMFP 468
            +GL    VG++LSANRWVRL +N  A+ L++R P+ L L  +L++ A+ S+AYA            I  F VLL AR  WG CWS IR+  +   + S       P+ +G+++G Y+G +R GSV G V G +LFDL+ +     L  L S    P
Sbjct:   37 IGLLPIQVGILLSANRWVRLLTNHLAERLVDRFPVNLMLVLSLVLGALLSLAYAY-----------ISSFLVLLVARCLWGLCWSFIRHISVMGVASSTE-----PQNLGQMMGFYNGISRIGSVLGIVLGGILFDLIGFSTTLALFCLFSLFAVP 176          
BLAST of mRNA_M-pyrifera_M_contig121164.4357.1 vs. uniprot
Match: A0A2E7JJL6_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A2E7JJL6_9BACT)

HSP 1 Score: 95.9 bits (237), Expect = 2.570e-20
Identity = 66/167 (39.52%), Postives = 88/167 (52.69%), Query Frame = 1
Query:    1 LGLTSRAVGVVLSANRWVRLWSNAPAKALLERLPIGLSLSATLLVAAVCSVAYAVAWPLAAMTLSSIPVFTVLLAARLAWGCCWSIIRYSGLWTCSDSIRHGFGRPEAMGRIVGLYDGFTRFGSVFGNVFGAMLFDLLHWPACFGLLALASAIMFPLGYLSRRGLPE 501
            LGL    VG++L+ANR+VR++ N   + L  R      L   L   AV S  YA+           +P+F  LL ARL WG CWS+IR  GL T +++   G      +GR +GL    TR GSV GN  GA+  DL+ +     + AL S +  PLG L+RR LPE
Sbjct:   35 LGLLPIQVGILLAANRFVRIFINHWIERLSNRYSPSWMLGCALAGGAVLSAVYAL-----------LPLFACLLIARLLWGVCWSVIRQIGLMTVAEAAAAG-----GIGRYMGLNSALTRLGSVSGNFIGALGHDLIGFAGILLVFALVSGLAVPLGPLARRSLPE 185          
BLAST of mRNA_M-pyrifera_M_contig121164.4357.1 vs. uniprot
Match: A0A836XHG5_9BACT (MFS transporter n=1 Tax=Candidatus Handelsmanbacteria bacterium TaxID=2099671 RepID=A0A836XHG5_9BACT)

HSP 1 Score: 92.0 bits (227), Expect = 6.590e-19
Identity = 64/165 (38.79%), Postives = 86/165 (52.12%), Query Frame = 1
Query:    1 LGLTSRAVGVVLSANRWVRLWSNAPAKALLERLPIGLSLSATLLVAAVCSVAYAVAWPLAAMTLSSIPVFTVLLAARLAWGCCWSIIRYSGLWTCSDSIRHGFGRPEAMGRIVGLYDGFTRFGSVFGNVFGAMLFDLLHWPACFGLLALASAIMFPLGYLSRRGL 495
            +GL    VG++L+ANR+VR++ N   +    R      L   L   AV S  YA+           +P+F+VLL ARL WG CWS IR  G+ T  DS+  G      +GR +GLY   TR GSV GN  GA+  DL+ +     + AL S +  PLG L+R  L
Sbjct:   35 MGLLPIQVGILLAANRFVRVFINHRVERFCHRYSPSWLLGGALAGGAVLSAVYAL-----------LPLFSVLLVARLLWGVCWSFIRQIGITTVVDSVEVGH-----LGRSMGLYSVLTRIGSVSGNFIGALGHDLIGFTGILLVFALVSGLAVPLGPLARGSL 183          
BLAST of mRNA_M-pyrifera_M_contig121164.4357.1 vs. uniprot
Match: A0A6C1QQZ9_9SPIO (MFS transporter n=1 Tax=Spirochaetaceae bacterium TaxID=1898206 RepID=A0A6C1QQZ9_9SPIO)

HSP 1 Score: 90.9 bits (224), Expect = 1.890e-18
Identity = 63/167 (37.72%), Postives = 92/167 (55.09%), Query Frame = 1
Query:    1 LGLTSRAVGVVLSANRWVRLWSNAPAKALLERLPIGLSLSATLLVAAVCSVAYAVAWPLAAMTLSSIPVFTVLLAARLAWGCCWSIIRYSGLWTCSDSIRHGFGRPEAMGRIVGLYDGFTRFGSVFGNVFGAMLFDLLHWPACFGLLALASAIMFPLGYLSRRGLPE 501
            LGL+   VG++LSANRWVR+ +N  A+++LER    ++L+  L+  A  + AYA+A           P F + L AR+ WG CWS IR+ G+ T   S+  G GR  A   ++GLY G  + G V G +  ++LFD + +   F  +AL S I  P    + R LP 
Sbjct:   41 LGLSPLQVGILLSANRWVRIGTNHLARSILERREAPVALTVVLVGGAAATAAYALA-----------PGFGLFLVARMVWGLCWSFIRHIGVMT---SVTAGEGRRAA--GVLGLYTGVVQAGFVVGTMSASVLFDTVGYRLAFLGIALVSLIGIPFELAAFRTLPH 191          
BLAST of mRNA_M-pyrifera_M_contig121164.4357.1 vs. uniprot
Match: A0A3D5FU94_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Candidatus Latescibacteria bacterium TaxID=2053570 RepID=A0A3D5FU94_9BACT)

HSP 1 Score: 89.0 bits (219), Expect = 2.790e-18
Identity = 65/163 (39.88%), Postives = 86/163 (52.76%), Query Frame = 1
Query:    1 LGLTSRAVGVVLSANRWVRLWSNAPAKALLERLPIGLSLSATLLVAAVCSVAYAVAWPLAAMTLSSIPVFTVLLAARLAWGCCWSIIRYSGLWTCSDSIRHGFGRPEAMGRIVGLYDGFTRFGSVFGNVFGAMLFDLLHWPACFGLLALASAIMFPLGYLSRR 489
            LGL    VGV+LSANR VRL SN  A+         + L+ +L   A  +VAY +              F +LL+AR+ WG CWS IR  G+ T  D   H       +GR +G Y G +R GS+ GN+ GA+  DL+ + A   L AL S +M PLG L+RR
Sbjct:   28 LGLEPYQVGVLLSANRIVRLLSNHFAERACRWWSPSVLLTLSLAAGAGLNVAYGL-----------FAAFPILLSARILWGVCWSFIRQIGMMTVVD---HAV--DSHLGRYMGYYSGISRMGSISGNLLGAVGHDLIGFTATLLLFALLSGVMVPLGPLARR 174          
BLAST of mRNA_M-pyrifera_M_contig121164.4357.1 vs. uniprot
Match: A0A6I7PFV4_9SPIO (MFS transporter n=1 Tax=Spirochaetaceae bacterium TaxID=1898206 RepID=A0A6I7PFV4_9SPIO)

HSP 1 Score: 89.0 bits (219), Expect = 9.360e-18
Identity = 62/167 (37.13%), Postives = 88/167 (52.69%), Query Frame = 1
Query:    1 LGLTSRAVGVVLSANRWVRLWSNAPAKALLERLPIGLSLSATLLVAAVCSVAYAVAWPLAAMTLSSIPVFTVLLAARLAWGCCWSIIRYSGLWTCSDSIRHGFGRPEAMGRIVGLYDGFTRFGSVFGNVFGAMLFDLLHWPACFGLLALASAIMFPLGYLSRRGLPE 501
            LG +   VG++LSANRWVRL +N  A+ +LER      L+  L   A  ++ YA A           P F + LAAR+ WG CWS IR+ G+ T S S+    GR +    ++GLY G  + G + G + GA+LFD  ++   F L+AL S +     Y   R +P 
Sbjct:   41 LGFSPIQVGILLSANRWVRLVTNHVARHVLERRRASHVLALALCAGACSTLVYAAA-----------PPFWLFLAARMVWGLCWSFIRHIGVMT-SISV----GRQQHAAAVLGLYTGVVQLGFIAGTLAGAVLFDAFNYSFTFLLVALVSLVGVAFDYAGFRLVPR 191          
BLAST of mRNA_M-pyrifera_M_contig121164.4357.1 vs. uniprot
Match: A0A2D6D3G1_9BACT (Uncharacterized protein n=1 Tax=Candidatus Poribacteria bacterium TaxID=2026781 RepID=A0A2D6D3G1_9BACT)

HSP 1 Score: 88.6 bits (218), Expect = 1.430e-17
Identity = 64/163 (39.26%), Postives = 85/163 (52.15%), Query Frame = 1
Query:    1 LGLTSRAVGVVLSANRWVRLWSNAPAKALLERLPIGLSLSATLLVAAVCSVAYAVAWPLAAMTLSSIPVFTVLLAARLAWGCCWSIIRYSGLWTCSDSIRHGFGRPEAMGRIVGLYDGFTRFGSVFGNVFGAMLFDLLHWPACFGLLALASAIMFPLGYLSRR 489
            LGLT   VGV+LSANRWVR  +N  A+  L ++ I ++LS  L   A  +  Y VA             F V L  R+ WG CWS IR SGL T +     G    E++G ++G Y+   R GSV GN+ GA+  DLL +     + +  S I  PLG  S+R
Sbjct:   36 LGLTYIQVGVILSANRWVRFVTNNVAERALHKVNITVALSLALAAGAGVTALYGVASN-----------FVVFLLGRVLWGLCWSFIRQSGLVTAA-----GVSGEESVGAVMGSYNFIARLGSVAGNLAGAIGHDLLGFARTLFIFSGLSLIAVPLGVRSQR 182          
BLAST of mRNA_M-pyrifera_M_contig121164.4357.1 vs. uniprot
Match: A0A2E8WGH9_9BACT (MFS domain-containing protein n=2 Tax=FCB group TaxID=1783270 RepID=A0A2E8WGH9_9BACT)

HSP 1 Score: 87.8 bits (216), Expect = 1.990e-17
Identity = 60/166 (36.14%), Postives = 91/166 (54.82%), Query Frame = 1
Query:    1 LGLTSRAVGVVLSANRWVRLWSNAPAKALLERLPIGLSLSATLLVAAVCSVAYAVAWPLAAMTLSSIPVFTVLLAARLAWGCCWSIIRYSGLWTCSDSIRHGFGRPE-AMGRIVGLYDGFTRFGSVFGNVFGAMLFDLLHWPACFGLLALASAIMFPLGYLSRRGL 495
            +GL    VG+VLSANR++RL +N  A+ L  R+ + L +  +  + AV + AY           +S+  F +L+ AR+ WG CWS IR  GL T  +S       P+  +GR +G Y G +R GS+ GN+ GA+  DL+ + +     ++ S +  PLG   RRGL
Sbjct:   18 IGLMPFQVGLVLSANRFIRLITNHLAERLCRRINLSLLVVLSFGLGAVVTYAY-----------TSVTHFGLLILARVTWGLCWSFIRQIGLMTVVES------NPDHRLGRSMGFYSGISRTGSLAGNLLGAVGHDLIGYTSTLVSFSVVSLLAIPLGLFGRRGL 166          
BLAST of mRNA_M-pyrifera_M_contig121164.4357.1 vs. uniprot
Match: A0A2E3YI91_9BACT (Uncharacterized protein n=2 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A2E3YI91_9BACT)

HSP 1 Score: 87.4 bits (215), Expect = 3.420e-17
Identity = 64/163 (39.26%), Postives = 85/163 (52.15%), Query Frame = 1
Query:    1 LGLTSRAVGVVLSANRWVRLWSNAPAKALLERLPIGLSLSATLLVAAVCSVAYAVAWPLAAMTLSSIPVFTVLLAARLAWGCCWSIIRYSGLWTCSDSIRHGFGRPEAMGRIVGLYDGFTRFGSVFGNVFGAMLFDLLHWPACFGLLALASAIMFPLGYLSRR 489
            LGL    VGV+LSANR VRL SN  A+         + L+ +L   A  +VAY +              F +LL+AR+ WG CWS IR  G+ T  D   H       +GR +G Y   +R GS+ GN+ GA+  DL+ + A   L AL S +M PLG L+RR
Sbjct:   39 LGLEPYQVGVLLSANRIVRLLSNHFAERACRWWSPSVLLTLSLAAGAGLNVAYGL-----------FAAFPILLSARILWGVCWSFIRQIGMMTVVD---HAV--DSHLGRYMGYYSAISRMGSISGNLLGAVGHDLIGFTATLLLFALLSGVMVPLGLLARR 185          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121164.4357.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D2Z1J5_9BACT1.340e-2141.07Uncharacterized protein n=1 Tax=Candidatus Latesci... [more]
A0A2E7ZM18_9DELT2.710e-2139.10MFS domain-containing protein n=1 Tax=Deltaproteob... [more]
A0A2E7JJL6_9BACT2.570e-2039.52Uncharacterized protein n=1 Tax=Gemmatimonadetes b... [more]
A0A836XHG5_9BACT6.590e-1938.79MFS transporter n=1 Tax=Candidatus Handelsmanbacte... [more]
A0A6C1QQZ9_9SPIO1.890e-1837.72MFS transporter n=1 Tax=Spirochaetaceae bacterium ... [more]
A0A3D5FU94_9BACT2.790e-1839.88Uncharacterized protein (Fragment) n=1 Tax=Candida... [more]
A0A6I7PFV4_9SPIO9.360e-1837.13MFS transporter n=1 Tax=Spirochaetaceae bacterium ... [more]
A0A2D6D3G1_9BACT1.430e-1739.26Uncharacterized protein n=1 Tax=Candidatus Poribac... [more]
A0A2E8WGH9_9BACT1.990e-1736.14MFS domain-containing protein n=2 Tax=FCB group Ta... [more]
A0A2E3YI91_9BACT3.420e-1739.26Uncharacterized protein n=2 Tax=Gemmatimonadetes b... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121164contigM-pyrifera_M_contig121164:32..532 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score71.6
Seed ortholog evalue3.8e-10
Seed eggNOG ortholog479434.Sthe_1631
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.Major facilitator Superfamily
EggNOG OGsCOG0477@1,COG2814@2
COG Functional cat.EGP
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size501
Cds size501
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815731.0423172-CDS-M-pyrifera_M_contig121164:31..5321622815731.0423172-CDS-M-pyrifera_M_contig121164:31..532Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121164 32..532 -
1692277542.7659767-CDS-M-pyrifera_M_contig121164:31..5321692277542.7659767-CDS-M-pyrifera_M_contig121164:31..532Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121164 32..532 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121164.4357.1prot_M-pyrifera_M_contig121164.4357.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121164 32..532 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121164.4357.1

>prot_M-pyrifera_M_contig121164.4357.1 ID=prot_M-pyrifera_M_contig121164.4357.1|Name=mRNA_M-pyrifera_M_contig121164.4357.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=167bp
LGLTSRAVGVVLSANRWVRLWSNAPAKALLERLPIGLSLSATLLVAAVCS
VAYAVAWPLAAMTLSSIPVFTVLLAARLAWGCCWSIIRYSGLWTCSDSIR
HGFGRPEAMGRIVGLYDGFTRFGSVFGNVFGAMLFDLLHWPACFGLLALA
SAIMFPLGYLSRRGLPE
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mRNA from alignment at M-pyrifera_M_contig121164:32..532-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121164.4357.1 ID=mRNA_M-pyrifera_M_contig121164.4357.1|Name=mRNA_M-pyrifera_M_contig121164.4357.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=501bp|location=Sequence derived from alignment at M-pyrifera_M_contig121164:32..532- (Macrocystis pyrifera P11B4 male)
CTCGGCCTCACTTCGCGGGCCGTTGGCGTTGTGCTCAGCGCGAATCGCTG GGTCAGATTGTGGAGTAATGCACCTGCAAAGGCATTGCTGGAGCGACTTC CCATCGGACTTTCCTTGTCAGCGACTCTGCTTGTTGCTGCAGTCTGCTCC GTGGCCTACGCAGTAGCATGGCCTCTGGCCGCTATGACTCTTTCCTCTAT TCCTGTGTTCACAGTCCTATTGGCGGCAAGGCTGGCCTGGGGATGCTGTT GGAGCATTATTCGCTATTCGGGTCTGTGGACCTGTTCTGACAGCATTCGC CATGGATTCGGTCGGCCGGAAGCAATGGGAAGAATTGTCGGTCTCTACGA TGGCTTCACTCGCTTTGGCAGTGTGTTTGGCAATGTGTTTGGGGCAATGC TGTTTGACCTGCTTCACTGGCCAGCCTGCTTTGGGCTTCTAGCCCTTGCC TCAGCGATCATGTTCCCCCTTGGATACTTGTCCAGGCGTGGTCTTCCTGA A
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121164:32..532-

>mRNA_M-pyrifera_M_contig121164.4357.1 ID=mRNA_M-pyrifera_M_contig121164.4357.1|Name=mRNA_M-pyrifera_M_contig121164.4357.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1002bp|location=Sequence derived from alignment at M-pyrifera_M_contig121164:32..532- (Macrocystis pyrifera P11B4 male)
CTCGGCCTCACTTCGCGGGCCGTTGGCGTTGTGCTCAGCGCGAATCGCTG
GGTCAGATTGTGGAGTAATGCACCTGCAAAGGCATTGCTGGAGCGACTTC
CCATCGGACTTTCCTTGTCAGCGACTCTGCTTGTTGCTGCAGTCTGCTCC
GTGGCCTACGCAGTAGCATGGCCTCTGGCCGCTATGACTCTTTCCTCTAT
TCCTGTGTTCACAGTCCTATTGGCGGCAAGGCTGGCCTGGGGATGCTGTT
GGAGCATTATTCGCTATTCGGGTCTGTGGACCTGTTCTGACAGCATTCGC
CATGGATTCGGTCGGCCGGAAGCAATGGGAAGAATTGTCGGTCTCTACGA
TGGCTTCACTCGCTTTGGCAGTGTGTTTGGCAATGTGTTTGGGGCAATGC
TGTTTGACCTGCTTCACTGGCCAGCCTGCTTTGGGCTTCTAGCCCTTGCC
TCAGCGATCATGTTCCCCCTTGGATACTTGTCCAGGCGTGGTCTTCCTGA
ACTCGGCCTCACTTCGCGGGCCGTTGGCGTTGTGCTCAGCGCGAATCGCT
GGGTCAGATTGTGGAGTAATGCACCTGCAAAGGCATTGCTGGAGCGACTT
CCCATCGGACTTTCCTTGTCAGCGACTCTGCTTGTTGCTGCAGTCTGCTC
CGTGGCCTACGCAGTAGCATGGCCTCTGGCCGCTATGACTCTTTCCTCTA
TTCCTGTGTTCACAGTCCTATTGGCGGCAAGGCTGGCCTGGGGATGCTGT
TGGAGCATTATTCGCTATTCGGGTCTGTGGACCTGTTCTGACAGCATTCG
CCATGGATTCGGTCGGCCGGAAGCAATGGGAAGAATTGTCGGTCTCTACG
ATGGCTTCACTCGCTTTGGCAGTGTGTTTGGCAATGTGTTTGGGGCAATG
CTGTTTGACCTGCTTCACTGGCCAGCCTGCTTTGGGCTTCTAGCCCTTGC
CTCAGCGATCATGTTCCCCCTTGGATACTTGTCCAGGCGTGGTCTTCCTG
AA
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