mRNA_M-pyrifera_M_contig121160.4356.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121160.4356.1
Unique NamemRNA_M-pyrifera_M_contig121160.4356.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig121160.4356.1 vs. uniprot
Match: A0A8J9ZN87_BRALA (Hypp1766 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9ZN87_BRALA)

HSP 1 Score: 55.8 bits (133), Expect = 1.270e-6
Identity = 32/103 (31.07%), Postives = 59/103 (57.28%), Query Frame = 1 
Query:   43 RRRARVAETLPRLAFVACDVVVYVSNESFASAAYMQRVRKLAFDSTESVDSALSPALVLVHNQ-CSLDEEFDVAACTAAFFDN-RENEELRQLYSEVVCLAVP 345
            +R+    +TLP LAF+  DVVVYV        + ++ +  +A D++E V+    P+LV++ N+  +++   D    T +F DN   ++EL++LY  V  +++P
Sbjct:  154 KRKQLTMKTLPSLAFLLSDVVVYVHQSPVCDFSMLETIAAIARDASEGVEHEWKPSLVILQNKNAAINSNIDGIDGTDSFLDNIHMSKELQKLYQSVKVMSLP 256
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BLAST of mRNA_M-pyrifera_M_contig121160.4356.1 vs. uniprot
Match: A0A812HXV8_9DINO (Ttc28 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812HXV8_9DINO)

HSP 1 Score: 50.8 bits (120), Expect = 7.070e-5
Identity = 30/86 (34.88%), Postives = 50/86 (58.14%), Query Frame = 1 
Query:   28 AAYQARRRARVAETL-PRLAFVACDVVVYVSNESFASAAYMQRVRKLAFDSTESVDSALSPALVLVHNQCSLDEE-FDVAACTAAF 279
            A+++++RR  + E+  P +A++ CDVVV+++ E       ++   + A  +   V SAL+PAL++V N C   E  FD   CT AF
Sbjct:  385 ASWESKRRQVLKESFQPAVAYLMCDVVVFLTREKLVCRRALEECEQFARAANARVSSALAPALIIVQNCCRPSEGLFDPEMCTEAF 470
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BLAST of mRNA_M-pyrifera_M_contig121160.4356.1 vs. uniprot
Match: A0A812M234_9DINO (RH46 protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812M234_9DINO)

HSP 1 Score: 50.4 bits (119), Expect = 9.840e-5
Identity = 30/86 (34.88%), Postives = 48/86 (55.81%), Query Frame = 1 
Query:   28 AAYQARRRARVAETL-PRLAFVACDVVVYVSNESFASAAYMQRVRKLAFDSTESVDSALSPALVLVHNQCSLDEE-FDVAACTAAF 279
            A+++ +RR  + E+  P +A++ CDVVV+++ E       ++   + A  +   V SAL PAL++V N C   E  FD   CT AF
Sbjct:  177 ASWEGKRRQALKESFQPAVAYLMCDVVVFLTREKLVCRRALEECEQFARAANARVSSALPPALIIVQNCCRPSEGIFDPEKCTEAF 262
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BLAST of mRNA_M-pyrifera_M_contig121160.4356.1 vs. uniprot
Match: A0A812Q467_SYMMI (RH46 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812Q467_SYMMI)

HSP 1 Score: 50.4 bits (119), Expect = 9.840e-5
Identity = 30/86 (34.88%), Postives = 48/86 (55.81%), Query Frame = 1 
Query:   28 AAYQARRRARVAETL-PRLAFVACDVVVYVSNESFASAAYMQRVRKLAFDSTESVDSALSPALVLVHNQCSLDEE-FDVAACTAAF 279
            A+++ +RR  + E+  P +A++ CDVVV+++ E       ++   + A  +   V SAL PAL++V N C   E  FD   CT AF
Sbjct:  167 ASWEGKRRQALKESFQPAVAYLMCDVVVFLTREKLVCRRALEECEQFARAANARVSSALPPALIIVQNCCRPSEGIFDPEKCTEAF 252
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BLAST of mRNA_M-pyrifera_M_contig121160.4356.1 vs. uniprot
Match: A0A812V4D5_9DINO (RH46 protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812V4D5_9DINO)

HSP 1 Score: 50.4 bits (119), Expect = 9.970e-5
Identity = 30/86 (34.88%), Postives = 48/86 (55.81%), Query Frame = 1 
Query:   28 AAYQARRRARVAETL-PRLAFVACDVVVYVSNESFASAAYMQRVRKLAFDSTESVDSALSPALVLVHNQCSLDEE-FDVAACTAAF 279
            A+++ +RR  + E+  P +A++ CDVVV+++ E       ++   + A  +   V SAL PAL++V N C   E  FD   CT AF
Sbjct:  167 ASWEGKRRQALKESFQPAVAYLMCDVVVFLTREKLVCRRALEECEQFARAANARVSSALPPALIIVQNCCRPSEGIFDPEKCTEAF 252
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BLAST of mRNA_M-pyrifera_M_contig121160.4356.1 vs. uniprot
Match: A0A812TC90_9DINO (RH46 protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812TC90_9DINO)

HSP 1 Score: 50.4 bits (119), Expect = 9.980e-5
Identity = 30/86 (34.88%), Postives = 48/86 (55.81%), Query Frame = 1 
Query:   28 AAYQARRRARVAETL-PRLAFVACDVVVYVSNESFASAAYMQRVRKLAFDSTESVDSALSPALVLVHNQCSLDEE-FDVAACTAAF 279
            A+++ +RR  + E+  P +A++ CDVVV+++ E       ++   + A  +   V SAL PAL++V N C   E  FD   CT AF
Sbjct:  177 ASWEGKRRQALKESFQPAVAYLMCDVVVFLTREKLVCRRALEECEQFARAANARVSSALPPALIIVQNCCRPSEGIFDPEKCTEAF 262
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121160.4356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A8J9ZN87_BRALA1.270e-631.07Hypp1766 protein n=1 Tax=Branchiostoma lanceolatum... [more]
A0A812HXV8_9DINO7.070e-534.88Ttc28 protein n=1 Tax=Symbiodinium natans TaxID=87... [more]
A0A812M234_9DINO9.840e-534.88RH46 protein n=1 Tax=Symbiodinium sp. CCMP2592 Tax... [more]
A0A812Q467_SYMMI9.840e-534.88RH46 protein n=1 Tax=Symbiodinium microadriaticum ... [more]
A0A812V4D5_9DINO9.970e-534.88RH46 protein n=1 Tax=Symbiodinium necroappetens Ta... [more]
A0A812TC90_9DINO9.980e-534.88RH46 protein n=1 Tax=Symbiodinium sp. CCMP2456 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121160contigM-pyrifera_M_contig121160:165..515 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size351
Cds size333
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815731.0005908-CDS-M-pyrifera_M_contig121160:164..4971622815731.0005908-CDS-M-pyrifera_M_contig121160:164..497Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121160 165..497 -
1692277542.747952-CDS-M-pyrifera_M_contig121160:164..4971692277542.747952-CDS-M-pyrifera_M_contig121160:164..497Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121160 165..497 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815731.0109022-UTR-M-pyrifera_M_contig121160:497..5151622815731.0109022-UTR-M-pyrifera_M_contig121160:497..515Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig121160 498..515 -
1692277542.7578602-UTR-M-pyrifera_M_contig121160:497..5151692277542.7578602-UTR-M-pyrifera_M_contig121160:497..515Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig121160 498..515 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121160.4356.1prot_M-pyrifera_M_contig121160.4356.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121160 165..497 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121160.4356.1

>prot_M-pyrifera_M_contig121160.4356.1 ID=prot_M-pyrifera_M_contig121160.4356.1|Name=mRNA_M-pyrifera_M_contig121160.4356.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=111bp
MGAAAYQARRRARVAETLPRLAFVACDVVVYVSNESFASAAYMQRVRKLA
FDSTESVDSALSPALVLVHNQCSLDEEFDVAACTAAFFDNRENEELRQLY
SEVVCLAVPHR
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mRNA from alignment at M-pyrifera_M_contig121160:165..515-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121160.4356.1 ID=mRNA_M-pyrifera_M_contig121160.4356.1|Name=mRNA_M-pyrifera_M_contig121160.4356.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=351bp|location=Sequence derived from alignment at M-pyrifera_M_contig121160:165..515- (Macrocystis pyrifera P11B4 male)
GCGGCGGCGGCGGCGGCGATGGGCGCGGCGGCGTACCAGGCGCGGCGGCG
GGCGCGCGTGGCGGAGACGCTGCCGCGGCTGGCCTTCGTGGCCTGCGACG
TGGTGGTCTACGTGTCGAACGAGTCCTTCGCGAGCGCGGCCTACATGCAG
CGGGTGCGCAAGCTGGCCTTCGACAGCACGGAGAGCGTCGACTCGGCGCT
CTCGCCCGCGCTGGTGCTGGTGCACAACCAATGCTCGCTCGACGAGGAGT
TCGACGTCGCGGCCTGCACGGCGGCCTTCTTCGACAACCGCGAGAACGAA
GAGCTGCGCCAGCTCTACAGCGAAGTCGTCTGCCTCGCCGTTCCGCACCG
C
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121160:165..515-

>mRNA_M-pyrifera_M_contig121160.4356.1 ID=mRNA_M-pyrifera_M_contig121160.4356.1|Name=mRNA_M-pyrifera_M_contig121160.4356.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=666bp|location=Sequence derived from alignment at M-pyrifera_M_contig121160:165..515- (Macrocystis pyrifera P11B4 male)
ATGGGCGCGGCGGCGTACCAGGCGCGGCGGCGGGCGCGCGTGGCGGAGAC
GCTGCCGCGGCTGGCCTTCGTGGCCTGCGACGTGGTGGTCTACGTGTCGA
ACGAGTCCTTCGCGAGCGCGGCCTACATGCAGCGGGTGCGCAAGCTGGCC
TTCGACAGCACGGAGAGCGTCGACTCGGCGCTCTCGCCCGCGCTGGTGCT
GGTGCACAACCAATGCTCGCTCGACGAGGAGTTCGACGTCGCGGCCTGCA
CGGCGGCCTTCTTCGACAACCGCGAGAACGAAGAGCTGCGCCAGCTCTAC
AGCGAAGTCGTCTGCCTCGCCGTTCCGCACCGCATGGGCGCGGCGGCGTA
CCAGGCGCGGCGGCGGGCGCGCGTGGCGGAGACGCTGCCGCGGCTGGCCT
TCGTGGCCTGCGACGTGGTGGTCTACGTGTCGAACGAGTCCTTCGCGAGC
GCGGCCTACATGCAGCGGGTGCGCAAGCTGGCCTTCGACAGCACGGAGAG
CGTCGACTCGGCGCTCTCGCCCGCGCTGGTGCTGGTGCACAACCAATGCT
CGCTCGACGAGGAGTTCGACGTCGCGGCCTGCACGGCGGCCTTCTTCGAC
AACCGCGAGAACGAAGAGCTGCGCCAGCTCTACAGCGAAGTCGTCTGCCT
CGCCGTTCCGCACCGC
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