mRNA_M-pyrifera_M_contig12116.4353.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12116.4353.1
Unique NamemRNA_M-pyrifera_M_contig12116.4353.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12116.4353.1 vs. uniprot
Match: D7FNB2_ECTSI (SSD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNB2_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 1.460e-31
Identity = 85/146 (58.22%), Postives = 92/146 (63.01%), Query Frame = 1 
Query:   61 RSRYSLALTGITIVVASLATTIGLLSLAGVGTTLIVWEVVPFLTLAIGVDNMVILSREFDRLEAAPEFEISVPGLCSTKGMQSTG------------ATGPTYAWAGSRSLRG-------------SERTEEFRLENRMGAAVSKV 423
            RSRYSLALTGITIVVASLATTIGLLSLAGV TTLIVWEVVPFLTLAIGVDNMVILSREFDRLE+ PEFE         + ++  G             TGPT+                       ++ T E RLE RMGAAVSKV
Sbjct:  310 RSRYSLALTGITIVVASLATTIGLLSLAGVDTTLIVWEVVPFLTLAIGVDNMVILSREFDRLESTPEFEACASDGQHGQHLKGAGHPNGKXXXXXXDTTGPTFXXXXXXXXXXXXXXXXXXXXGDDNKTTAEARLEERMGAAVSKV 455
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BLAST of mRNA_M-pyrifera_M_contig12116.4353.1 vs. uniprot
Match: W7TJL6_9STRA (Patched family protein (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJL6_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 2.790e-13
Identity = 41/63 (65.08%), Postives = 51/63 (80.95%), Query Frame = 1 
Query:   61 RSRYSLALTGITIVVASLATTIGLLSLAGVGTTLIVWEVVPFLTLAIGVDNMVILSREFDRLE 249
            RSR+ L   GI +V+ASLA ++G  + AG+ TTLIVWEVVPFL LAIGVDNM I++REFDRL+
Sbjct:   29 RSRFLLGSLGILVVLASLAVSLGSWAFAGLHTTLIVWEVVPFLLLAIGVDNMFIITREFDRLQ 91
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BLAST of mRNA_M-pyrifera_M_contig12116.4353.1 vs. uniprot
Match: A0A1Y1ZCB0_9FUNG (Niemann-pick C type protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1ZCB0_9FUNG)

HSP 1 Score: 72.4 bits (176), Expect = 4.720e-12
Identity = 40/85 (47.06%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:   16 RVSYSDARRRIFVCDRSRYSLALTGITIVVASLATTIGLLSLAGVGTTLIVWEVVPFLTLAIGVDNMVILSREFDRLEAAPEFEI 270
            ++S S + RR+ +   S++SLA+ GI IV+AS++ ++G+ S AGV  TLI+ EV+PFL LA+GVDN+ ILS EF+R  +   F +
Sbjct:  568 KISRSSSIRRLLI--DSKFSLAICGILIVIASVSVSVGVFSFAGVKITLIIAEVIPFLVLAVGVDNIFILSHEFERQSSDANFTV 650
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BLAST of mRNA_M-pyrifera_M_contig12116.4353.1 vs. uniprot
Match: A0A835YXX1_9STRA (SSD domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXX1_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 8.800e-12
Identity = 39/61 (63.93%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:   64 SRYSLALTGITIVVASLATTIGLLSLAGVGTTLIVWEVVPFLTLAIGVDNMVILSREFDRL 246
            +R +LA TG+ IV AS A  I +LS  G+ TTLIVWEVVPFL LAIGVDN  +++REFDRL
Sbjct:  537 ARCALAATGLVIVAASFAAAIAVLSACGLATTLIVWEVVPFLALAIGVDNEFLVAREFDRL 597
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BLAST of mRNA_M-pyrifera_M_contig12116.4353.1 vs. uniprot
Match: A0A316UZE9_9BASI (Multidrug efflux transporter AcrB transmembrane domain-containing protein n=1 Tax=Jaminaea rosea TaxID=1569628 RepID=A0A316UZE9_9BASI)

HSP 1 Score: 70.1 bits (170), Expect = 3.050e-11
Identity = 40/75 (53.33%), Postives = 56/75 (74.67%), Query Frame = 1 
Query:   19 VSYSDARRRIFVCDRSRYSLALTGITIVVASLATTIGLLSLAGVGTTLIVWEVVPFLTLAIGVDNMVILSREFDR 243
            +S+   R R+ V  RS+++L L GI +V+AS+++ IGLLS  GV TTLI+ EV+PFL LA+GVDN+ +LS E DR
Sbjct:  704 LSFLPTRHRLLV--RSKFTLGLFGIIMVLASVSSAIGLLSAIGVSTTLIIAEVLPFLVLAVGVDNIFLLSNEMDR 776
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BLAST of mRNA_M-pyrifera_M_contig12116.4353.1 vs. uniprot
Match: A0A316U3H2_9BASI (SSD domain-containing protein n=1 Tax=Pseudomicrostroma glucosiphilum TaxID=1684307 RepID=A0A316U3H2_9BASI)

HSP 1 Score: 69.3 bits (168), Expect = 5.690e-11
Identity = 40/68 (58.82%), Postives = 52/68 (76.47%), Query Frame = 1 
Query:   40 RRIFVCDRSRYSLALTGITIVVASLATTIGLLSLAGVGTTLIVWEVVPFLTLAIGVDNMVILSREFDR 243
            RR FV   S+++L L GI IV+AS+++ IGLLS  GV TTLI+ EV+PFL LA+GVDN+ +LS E DR
Sbjct:  798 RRFFV--NSKFTLGLFGIVIVLASVSSAIGLLSAMGVSTTLIIAEVLPFLVLAVGVDNIFLLSNEMDR 863
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BLAST of mRNA_M-pyrifera_M_contig12116.4353.1 vs. uniprot
Match: A0A2P4Q8B7_RHIID (SSD domain-containing protein n=10 Tax=Rhizophagus TaxID=1129544 RepID=A0A2P4Q8B7_RHIID)

HSP 1 Score: 68.6 bits (166), Expect = 1.040e-10
Identity = 36/71 (50.70%), Postives = 53/71 (74.65%), Query Frame = 1 
Query:   64 SRYSLALTGITIVVASLATTIGLLSLAGVGTTLIVWEVVPFLTLAIGVDNMVILSREFDRLEAAPEFEISV 276
            S++ L ++GI IV+AS++T +G+ SL G+  TLI+ EV+PFL LA+GVDN+ IL+ EF+RL      E+SV
Sbjct:  614 SKFMLGISGIIIVLASVSTAVGIFSLLGIKVTLIIAEVIPFLVLAVGVDNIFILNHEFERLTLKSFGEVSV 684
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BLAST of mRNA_M-pyrifera_M_contig12116.4353.1 vs. uniprot
Match: A0A316Z137_9BASI (SSD domain-containing protein n=1 Tax=Tilletiopsis washingtonensis TaxID=58919 RepID=A0A316Z137_9BASI)

HSP 1 Score: 68.6 bits (166), Expect = 1.060e-10
Identity = 39/71 (54.93%), Postives = 53/71 (74.65%), Query Frame = 1 
Query:   40 RRIFVCDRSRYSLALTGITIVVASLATTIGLLSLAGVGTTLIVWEVVPFLTLAIGVDNMVILSREFDRLEA 252
            RR+FV   S+++L L GI +V+AS+++ +GL S AGV  TLI+ EV+PFL LA+GVDN+ ILS E DR  A
Sbjct:  806 RRVFV--ESKFTLGLFGILVVLASVSSAVGLFSAAGVKVTLIIGEVLPFLLLAVGVDNIFILSNEMDRQNA 874
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BLAST of mRNA_M-pyrifera_M_contig12116.4353.1 vs. uniprot
Match: A0A077R5Y3_9BASI (Related to NCR1-transmembrane glycoprotein, involved in sphingolipid metabolism n=1 Tax=Melanopsichium pennsylvanicum 4 TaxID=1398559 RepID=A0A077R5Y3_9BASI)

HSP 1 Score: 67.8 bits (164), Expect = 1.960e-10
Identity = 41/94 (43.62%), Postives = 58/94 (61.70%), Query Frame = 1 
Query:   55 CDRSRYSLALTGITIVVASLATTIGLLSLAGVGTTLIVWEVVPFLTLAIGVDNMVILSREFDRLEAAPEFEIS----VPGLCSTKGMQSTGATG 324
            C  S+++L L GI IV+ S++  +G+ S  GV  TLI+ EV+PF+ LA+GVDN+ +L  E DR  A P    S       L S  G++STGA+G
Sbjct:  822 CVSSKFTLGLFGIIIVLCSVSCAVGIFSAMGVKVTLIIAEVIPFMLLAVGVDNIFLLCNEMDRETAQPASAASGLAQSDSLTSVPGIRSTGASG 915
[Close]
BLAST of mRNA_M-pyrifera_M_contig12116.4353.1 vs. uniprot
Match: A0A397TFM0_9GLOM (Niemann-pick C1 protein n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397TFM0_9GLOM)

HSP 1 Score: 66.6 bits (161), Expect = 4.900e-10
Identity = 33/61 (54.10%), Postives = 50/61 (81.97%), Query Frame = 1 
Query:   64 SRYSLALTGITIVVASLATTIGLLSLAGVGTTLIVWEVVPFLTLAIGVDNMVILSREFDRL 246
            S++ L ++GI IV+AS++T++G+ SL G+  TLI+ EV+PFL LA+GVDN+ IL+ EF+RL
Sbjct:  618 SKFMLGISGIIIVLASVSTSVGIFSLLGIKVTLIIAEVIPFLVLAVGVDNIFILNHEFERL 678
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12116.4353.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNB2_ECTSI1.460e-3158.22SSD domain-containing protein n=2 Tax=Ectocarpus T... [more]
W7TJL6_9STRA2.790e-1365.08Patched family protein (Fragment) n=1 Tax=Nannochl... [more]
A0A1Y1ZCB0_9FUNG4.720e-1247.06Niemann-pick C type protein n=1 Tax=Basidiobolus m... [more]
A0A835YXX1_9STRA8.800e-1263.93SSD domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A316UZE9_9BASI3.050e-1153.33Multidrug efflux transporter AcrB transmembrane do... [more]
A0A316U3H2_9BASI5.690e-1158.82SSD domain-containing protein n=1 Tax=Pseudomicros... [more]
A0A2P4Q8B7_RHIID1.040e-1050.70SSD domain-containing protein n=10 Tax=Rhizophagus... [more]
A0A316Z137_9BASI1.060e-1054.93SSD domain-containing protein n=1 Tax=Tilletiopsis... [more]
A0A077R5Y3_9BASI1.960e-1043.62Related to NCR1-transmembrane glycoprotein, involv... [more]
A0A397TFM0_9GLOM4.900e-1054.10Niemann-pick C1 protein n=1 Tax=Glomus cerebriform... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12116contigM-pyrifera_M_contig12116:216..2313 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.2
Seed ortholog evalue7.7e-28
Seed eggNOG ortholog2880.D7FNB2
KEGG koko:K12385
KEGG TC2.A.6.6
KEGG Pathwayko04142,ko04979,map04142,map04979
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.cellular response to sterol depletion
EggNOG OGsKOG1933@1,KOG1933@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons3
Model size426
Cds size426
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12116.4353.1prot_M-pyrifera_M_contig12116.4353.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12116 216..2313 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815730.8850355-CDS-M-pyrifera_M_contig12116:215..3891622815730.8850355-CDS-M-pyrifera_M_contig12116:215..389Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12116 216..389 +
1692277542.683952-CDS-M-pyrifera_M_contig12116:215..3891692277542.683952-CDS-M-pyrifera_M_contig12116:215..389Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12116 216..389 +
1622815730.8971894-CDS-M-pyrifera_M_contig12116:1430..14981622815730.8971894-CDS-M-pyrifera_M_contig12116:1430..1498Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12116 1431..1498 +
1692277542.6976795-CDS-M-pyrifera_M_contig12116:1430..14981692277542.6976795-CDS-M-pyrifera_M_contig12116:1430..1498Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12116 1431..1498 +
1622815730.9080675-CDS-M-pyrifera_M_contig12116:2129..23131622815730.9080675-CDS-M-pyrifera_M_contig12116:2129..2313Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12116 2130..2313 +
1692277542.7050273-CDS-M-pyrifera_M_contig12116:2129..23131692277542.7050273-CDS-M-pyrifera_M_contig12116:2129..2313Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12116 2130..2313 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12116.4353.1

>prot_M-pyrifera_M_contig12116.4353.1 ID=prot_M-pyrifera_M_contig12116.4353.1|Name=mRNA_M-pyrifera_M_contig12116.4353.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=142bp
MRPTQRVSYSDARRRIFVCDRSRYSLALTGITIVVASLATTIGLLSLAGV
GTTLIVWEVVPFLTLAIGVDNMVILSREFDRLEAAPEFEISVPGLCSTKG
MQSTGATGPTYAWAGSRSLRGSERTEEFRLENRMGAAVSKV*
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mRNA from alignment at M-pyrifera_M_contig12116:216..2313+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12116.4353.1 ID=mRNA_M-pyrifera_M_contig12116.4353.1|Name=mRNA_M-pyrifera_M_contig12116.4353.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2098bp|location=Sequence derived from alignment at M-pyrifera_M_contig12116:216..2313+ (Macrocystis pyrifera P11B4 male)
ATGCGACCGACGCAACGCGTATCATACTCAGATGCCAGGCGCCGTATTTT
TGTATGCGATAGGTCGAGGTACTCCCTGGCTCTCACTGGAATCACGATTG
TGGTAGCCAGCCTCGCCACGACGATCGGCCTTCTTTCGTTGGCTGGAGTC
GGAACCACCCTCATCGTGTGGGAGGTACGGTTCCGCGGCGTGGGCATGCT
CACCGCTACATGGGGCCGAAGTGGTTCCCGCCGCATCTTCATTCGATAGT
TGCAGTCATCACCTTGCCGTTCGCGCTTCAAGTTTGTACTACAGTACTGT
ATATGAGGATGACTTTGGTAGGGGCAGTAGGTATGATGGGTAGAACTGAG
CGTGAGAAGCAAGGCCATCCCACAGCACCCTTGGTACAGAGGAGAGGGGG
AGGGGGCGGGGGCGTACTCGTTTGTTGCCTGCCTTACTCATTTAACCGTT
GACCTCGCATCCCTTTCGAGACGGAGCACCGTTCCTACTCCTAATTAGAG
ACACCTGCAACATTTGGACGCTCATTACGAGGGGGGGGGGGTGGTTTCAT
GCGGGTATATGCTTGAAATGGGGGTGTAACGGATCTGTTTACTCTTGTAG
TAATGGCGCCACAGCGCTTCGTATTTTGCTTCGGAAAGTGCCCATTAAAC
GCAAGATTACCGCCTTGTAAGTTTATGGCTTCGAGTAAGGCATATGTTGG
TGTGAATGAGGCGTACATTACTAATGACAAGGCTAGTTATTATAGTAGTT
GGGTGGCGAAGTAAGTCAACTATTACGGGGGGCCATAGTAAATAGGACCT
ACGGTACACACAAAAACCTGTATATTTAACTGTTTTTACTAACAATATTT
GGTCCTATTTACTATGCCCCCCCGTAGTAGCTGACTTTCTTTTCACCAAT
AAAAAATACGCACACGTCGAGCCACAAACGCGCCAGTCAGATACAAAGAC
GCAGAACTCCGCATATTACCTGCACGCAAGTATAGGTAAATACCTTGGCA
TCTACTAGTAACACAGCTGGTTTGCGAGTTATTGCCAGCCAACCCGCAGC
CCTAACGGTCTTCCTCGCGGACGCGGTGTATGGGAGTACGAAGACTTCGT
TCGATACAGGCCGACATCGTGTCGTGTTTGTTTTGCTGCTTTGTTCCACG
CTGTTGGTGCGCTCTGTGCGATGGTGCCGATGGTGCCTGGACAACGGCGC
GTCCCTTGCTGGCAGGTTGTTCCTTTCCTGACGCTTGCAATCGGAGTGGA
CAATATGGTGATCCTCTCGAGAGAGTTCGACAGGTGAGGAAAACAGCCTC
CGACCCTATATGGTGCATTCACCGCGCCATGGCTGCTGGGGTATGTTTCG
GACTACAATACGTTCGGAGCGAGGGTTGGGGCGAGGGCTGGAGTTGTTTT
CGCAAGCTTTTGTTTTGTTTGGGCATGGTTTCGAGCACAATTCAGCGGTA
GGCTTGCAGCCACGAACGGTATACCCTCTGCAAATGCGTGCATTTTCTTG
CCTGACTTACCCTCCCCTCCCCATCCCTACTTTCATGCGACGTCGACGAC
GGACTGCACCTGAACGGTCGTCGGAGCCTGCCCTGTTGGCCGCAGCCAGA
AACGCGTCGAAAAAATGACGCGAACATGCCTCAAGTGCGTCTGCAGGAAC
ATGCATCGAAGGATAAAATGGTTGATTTGTGACGTGCGACCCGAAACTCC
TACCAAGGTATCACGGGGGGGCTAATGTTGTAATCAAAACCCACGATGGG
CCTAAAAACCACACATTGCTCCTATGTTTAGTATGTTTAGAAGCGATGTT
TGGTTTTGATAACTATATTCCTCCTGACAGCAAGAGTTGGCCCTCCTCCC
CCCCTTTTTTTTGCAACTCTTCTGTGTGTGTGTGTGTGTGTGTGTGTTTT
TTCTGTGTTGCCAGACTGGAGGCGGCTCCCGAGTTCGAGATTAGCGTCCC
AGGTCTCTGTAGCACGAAGGGAATGCAGTCGACGGGAGCCACTGGGCCAA
CGTACGCCTGGGCCGGCTCGAGATCGCTGAGGGGGAGCGAAAGGACCGAG
GAGTTTAGGCTGGAAAACAGGATGGGGGCCGCCGTTTCCAAGGTATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12116:216..2313+

>mRNA_M-pyrifera_M_contig12116.4353.1 ID=mRNA_M-pyrifera_M_contig12116.4353.1|Name=mRNA_M-pyrifera_M_contig12116.4353.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=852bp|location=Sequence derived from alignment at M-pyrifera_M_contig12116:216..2313+ (Macrocystis pyrifera P11B4 male)
ATGCGACCGACGCAACGCGTATCATACTCAGATGCCAGGCGCCGTATTTT
TGTATGCGATAGGTCGAGGTACTCCCTGGCTCTCACTGGAATCACGATTG
TGGTAGCCAGCCTCGCCACGACGATCGGCCTTCTTTCGTTGGCTGGAGTC
GGAACCACCCTCATCGTGTGGGAGATGCGACCGACGCAACGCGTATCATA
CTCAGATGCCAGGCGCCGTATTTTTGTATGCGATAGGTCGAGGTACTCCC
TGGCTCTCACTGGAATCACGATTGTGGTAGCCAGCCTCGCCACGACGATC
GGCCTTCTTTCGTTGGCTGGAGTCGGAACCACCCTCATCGTGTGGGAGGT
TGTTCCTTTCCTGACGCTTGCAATCGGAGTGGACAATATGGTGATCCTCT
CGAGAGAGTTCGACAGGTTGTTCCTTTCCTGACGCTTGCAATCGGAGTGG
ACAATATGGTGATCCTCTCGAGAGAGTTCGACAGACTGGAGGCGGCTCCC
GAGTTCGAGATTAGCGTCCCAGGTCTCTGTAGCACGAAGGGAATGCAGTC
GACGGGAGCCACTGGGCCAACGTACGCCTGGGCCGGCTCGAGATCGCTGA
GGGGGAGCGAAAGGACCGAGGAGTTTAGGCTGGAAAACAGGATGGGGGCC
GCCGTTTCCAAGGTATAAACTGGAGGCGGCTCCCGAGTTCGAGATTAGCG
TCCCAGGTCTCTGTAGCACGAAGGGAATGCAGTCGACGGGAGCCACTGGG
CCAACGTACGCCTGGGCCGGCTCGAGATCGCTGAGGGGGAGCGAAAGGAC
CGAGGAGTTTAGGCTGGAAAACAGGATGGGGGCCGCCGTTTCCAAGGTAT
AA
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