mRNA_M-pyrifera_M_contig1211.4344.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1211.4344.1
Unique NamemRNA_M-pyrifera_M_contig1211.4344.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig1211.4344.1 vs. uniprot
Match: I2Q523_9DELT (Uncharacterized protein n=2 Tax=Desulfovibrionaceae TaxID=194924 RepID=I2Q523_9DELT)

HSP 1 Score: 58.2 bits (139), Expect = 1.980e-9
Identity = 32/68 (47.06%), Postives = 41/68 (60.29%), Query Frame = 1 
Query:   22 LPLAAVALAIVVLGA-----WRLRGGR-PLS-LPGDIRYEGDGFRVHFPWVSCLLLSAFGNVLMWAFQ 204
            L LA   L +V+L A     W+    R PL  LPGDI   G GF VHFPWV+CL +SA  ++L+W F+
Sbjct:   12 LGLALAGLGLVLLAAEKTDLWQSLWARFPLGRLPGDIHLRGQGFSVHFPWVTCLAVSAVVSILLWIFR 79
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BLAST of mRNA_M-pyrifera_M_contig1211.4344.1 vs. uniprot
Match: A0A7C3RF94_9BACT (DUF2905 domain-containing protein n=1 Tax=Verrucomicrobia subdivision 3 bacterium TaxID=2052186 RepID=A0A7C3RF94_9BACT)

HSP 1 Score: 49.7 bits (117), Expect = 3.360e-6
Identity = 28/62 (45.16%), Postives = 35/62 (56.45%), Query Frame = 1 
Query:   22 LPLAAVALAIVVLGAWRLRGGRPLS-LPGDIRYEGDGFRVHFPWVSCLLLSAFGNVLMWAFQ 204
            L +  V L +V L  W   G   L  LPGDI Y    F VHFP V+CLL+SA   +L+W F+
Sbjct:    8 LVVCGVVLVVVGLLVWSGFGKGWLGRLPGDIHYTRGNFSVHFPIVTCLLISAVLTLLLWLFR 69
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BLAST of mRNA_M-pyrifera_M_contig1211.4344.1 vs. uniprot
Match: A0A6M1RZV5_9BACT (DUF2905 domain-containing protein n=2 Tax=Limisphaera ngatamarikiensis TaxID=1324935 RepID=A0A6M1RZV5_9BACT)

HSP 1 Score: 47.8 bits (112), Expect = 1.920e-5
Identity = 27/62 (43.55%), Postives = 36/62 (58.06%), Query Frame = 1 
Query:   22 LPLAAVALAIVVLGAWRLRGGRPLS-LPGDIRYEGDGFRVHFPWVSCLLLSAFGNVLMWAFQ 204
            L +A + LA+V +  W   G   L  LPGDI Y    F +HFP V+CLLLS    +L+W F+
Sbjct:    8 LVMAGLMLAVVGVLLWTGWGRGWLGRLPGDIHYTRGNFSLHFPIVTCLLLSLVLTMLLWLFR 69
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1211.4344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
I2Q523_9DELT1.980e-947.06Uncharacterized protein n=2 Tax=Desulfovibrionacea... [more]
A0A7C3RF94_9BACT3.360e-645.16DUF2905 domain-containing protein n=1 Tax=Verrucom... [more]
A0A6M1RZV5_9BACT1.920e-543.55DUF2905 domain-containing protein n=2 Tax=Limispha... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1211contigM-pyrifera_M_contig1211:8604..8843 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionProtein of unknown function DUF2905
Ec32 orthologEc-17_003660.1
Exons1
Model size240
Cds size240
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815730.2739637-CDS-M-pyrifera_M_contig1211:8603..88431622815730.2739637-CDS-M-pyrifera_M_contig1211:8603..8843Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1211 8604..8843 -
1692277542.3879066-CDS-M-pyrifera_M_contig1211:8603..88431692277542.3879066-CDS-M-pyrifera_M_contig1211:8603..8843Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1211 8604..8843 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1211.4344.1prot_M-pyrifera_M_contig1211.4344.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1211 8604..8843 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1211.4344.1

>prot_M-pyrifera_M_contig1211.4344.1 ID=prot_M-pyrifera_M_contig1211.4344.1|Name=mRNA_M-pyrifera_M_contig1211.4344.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=80bp
MITPSFRLPLAAVALAIVVLGAWRLRGGRPLSLPGDIRYEGDGFRVHFPW
VSCLLLSAFGNVLMWAFQGRGRSGARTGGG
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mRNA from alignment at M-pyrifera_M_contig1211:8604..8843-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1211.4344.1 ID=mRNA_M-pyrifera_M_contig1211.4344.1|Name=mRNA_M-pyrifera_M_contig1211.4344.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=240bp|location=Sequence derived from alignment at M-pyrifera_M_contig1211:8604..8843- (Macrocystis pyrifera P11B4 male)
ATGATCACACCATCCTTCCGGCTCCCTCTTGCCGCCGTGGCCCTAGCGAT
TGTCGTGCTCGGGGCGTGGAGGCTGAGGGGGGGTAGGCCTTTATCGCTTC
CAGGCGACATCCGATACGAGGGCGACGGCTTCCGCGTGCATTTCCCATGG
GTGTCGTGTCTGCTATTGTCTGCGTTCGGAAACGTTTTGATGTGGGCGTT
TCAGGGGAGGGGCAGAAGCGGGGCCAGGACCGGGGGAGGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1211:8604..8843-

>mRNA_M-pyrifera_M_contig1211.4344.1 ID=mRNA_M-pyrifera_M_contig1211.4344.1|Name=mRNA_M-pyrifera_M_contig1211.4344.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=480bp|location=Sequence derived from alignment at M-pyrifera_M_contig1211:8604..8843- (Macrocystis pyrifera P11B4 male)
ATGATCACACCATCCTTCCGGCTCCCTCTTGCCGCCGTGGCCCTAGCGAT
TGTCGTGCTCGGGGCGTGGAGGCTGAGGGGGGGTAGGCCTTTATCGCTTC
CAGGCGACATCCGATACGAGGGCGACGGCTTCCGCGTGCATTTCCCATGG
GTGTCGTGTCTGCTATTGTCTGCGTTCGGAAACGTTTTGATGTGGGCGTT
TCAGGGGAGGGGCAGAAGCGGGGCCAGGACCGGGGGAGGGATGATCACAC
CATCCTTCCGGCTCCCTCTTGCCGCCGTGGCCCTAGCGATTGTCGTGCTC
GGGGCGTGGAGGCTGAGGGGGGGTAGGCCTTTATCGCTTCCAGGCGACAT
CCGATACGAGGGCGACGGCTTCCGCGTGCATTTCCCATGGGTGTCGTGTC
TGCTATTGTCTGCGTTCGGAAACGTTTTGATGTGGGCGTTTCAGGGGAGG
GGCAGAAGCGGGGCCAGGACCGGGGGAGGG
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