mRNA_M-pyrifera_M_contig12107.4341.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12107.4341.1
Unique NamemRNA_M-pyrifera_M_contig12107.4341.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12107.4341.1 vs. uniprot
Match: A0A6H5KKF3_9PHAE (Fe2OG dioxygenase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKF3_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 8.010e-17
Identity = 35/44 (79.55%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:    4 LCVYRYLSDVEEGGETIFPRFGGRTGPVDFSDCTKGLKIKPVAG 135
            + V+ YLSDVEEGGETIFPR+GGRTG VDFSDCT GLK+KPV G
Sbjct:  366 ITVFWYLSDVEEGGETIFPRYGGRTGRVDFSDCTTGLKVKPVEG 409
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BLAST of mRNA_M-pyrifera_M_contig12107.4341.1 vs. uniprot
Match: A0A7S4HQN7_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HQN7_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 6.570e-12
Identity = 29/42 (69.05%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:   10 VYRYLSDVEEGGETIFPRFGGRTGPVDFSDCTKGLKIKPVAG 135
            V+ YLSDVE+GGETIFPR GG   P DFSDC++GLK+KP  G
Sbjct:  404 VFWYLSDVEKGGETIFPRAGGAPHPRDFSDCSRGLKVKPEEG 445
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BLAST of mRNA_M-pyrifera_M_contig12107.4341.1 vs. uniprot
Match: A0A7R9VV51_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VV51_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.330e-11
Identity = 27/42 (64.29%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:   10 VYRYLSDVEEGGETIFPRFGGRTGPVDFSDCTKGLKIKPVAG 135
            V+ YLSDVE+GGETIFPR  G   P DFSDC++GLK++P  G
Sbjct:   98 VFWYLSDVEKGGETIFPRHNGAPQPSDFSDCSRGLKVRPEEG 139
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BLAST of mRNA_M-pyrifera_M_contig12107.4341.1 vs. uniprot
Match: A0A7S2HKF4_9STRA (Hypothetical protein n=2 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HKF4_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.480e-11
Identity = 26/42 (61.90%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:   10 VYRYLSDVEEGGETIFPRFGGRTGPVDFSDCTKGLKIKPVAG 135
            V+ YLSDVE GGET+FP+  G   PVDF DC++GLK+KP  G
Sbjct:   69 VFWYLSDVEVGGETVFPKHNGAPQPVDFKDCSRGLKVKPEKG 110
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BLAST of mRNA_M-pyrifera_M_contig12107.4341.1 vs. uniprot
Match: A0A7S0N2B9_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0N2B9_9CRYP)

HSP 1 Score: 63.5 bits (153), Expect = 1.580e-11
Identity = 30/46 (65.22%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:    1 FLCVYRYLSDVEEGGETIFPRFGGRTGPV-DFSDCTKGLKIKPVAG 135
            F+ V+ YLSDVE+GGET+FP F G   PV DFSDCT+GLK+ P AG
Sbjct:   44 FITVFFYLSDVEQGGETVFP-FAGDDRPVTDFSDCTRGLKVPPKAG 88
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BLAST of mRNA_M-pyrifera_M_contig12107.4341.1 vs. uniprot
Match: A0A7S1ZVR3_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZVR3_TRICV)

HSP 1 Score: 65.1 bits (157), Expect = 2.230e-11
Identity = 28/42 (66.67%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:   10 VYRYLSDVEEGGETIFPRFGGRTGPVDFSDCTKGLKIKPVAG 135
            V+ YLSDV +GGETIFPR  G   P DFSDC+KGLK+KP  G
Sbjct:  166 VFWYLSDVAKGGETIFPRHNGAPQPYDFSDCSKGLKVKPEEG 207
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BLAST of mRNA_M-pyrifera_M_contig12107.4341.1 vs. uniprot
Match: A0A7S4SJR9_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4SJR9_9DINO)

HSP 1 Score: 64.3 bits (155), Expect = 8.010e-11
Identity = 25/41 (60.98%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    4 LCVYRYLSDVEEGGETIFPRFGGRTGPVDFSDCTKGLKIKP 126
            L V+ Y+SDVEEGGET+FP+ GG   P DF DC+KG K++P
Sbjct:  429 LTVFMYMSDVEEGGETVFPKHGGAQTPRDFGDCSKGYKVRP 469
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BLAST of mRNA_M-pyrifera_M_contig12107.4341.1 vs. uniprot
Match: L1JRT6_GUITC (Fe2OG dioxygenase domain-containing protein n=3 Tax=Guillardia theta TaxID=55529 RepID=L1JRT6_GUITC)

HSP 1 Score: 61.2 bits (147), Expect = 2.950e-10
Identity = 28/46 (60.87%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 FLCVYRYLSDVEEGGETIFPRFGGRTGPV-DFSDCTKGLKIKPVAG 135
            F+ V+ YLSDVEEGGET+FP   G    V DF+DC++GLK+KP AG
Sbjct:   92 FITVFFYLSDVEEGGETVFPFANGDDRRVTDFADCSRGLKVKPKAG 137
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BLAST of mRNA_M-pyrifera_M_contig12107.4341.1 vs. uniprot
Match: A0A7S1W6S4_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1W6S4_ALECA)

HSP 1 Score: 61.2 bits (147), Expect = 6.780e-10
Identity = 25/42 (59.52%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    4 LC-VYRYLSDVEEGGETIFPRFGGRTGPVDFSDCTKGLKIKP 126
            LC V+ Y+SDVEEGGET+FP   G   P DF DCT+G K++P
Sbjct:  219 LCTVFMYMSDVEEGGETVFPSHRGEPAPSDFGDCTRGYKVRP 260
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BLAST of mRNA_M-pyrifera_M_contig12107.4341.1 vs. uniprot
Match: A0A812RCR0_9DINO (P4H10 protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812RCR0_9DINO)

HSP 1 Score: 61.2 bits (147), Expect = 9.760e-10
Identity = 26/42 (61.90%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:   10 VYRYLSDVEEGGETIFPRFGGRTGPVDFSDCTKGLKIKPVAG 135
            V+ YLSDVEEGG+T FPR GGR  P DF+DC+KG+ + P  G
Sbjct:  605 VFFYLSDVEEGGQTNFPRAGGRPQPRDFADCSKGVSVYPRRG 646
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12107.4341.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKF3_9PHAE8.010e-1779.55Fe2OG dioxygenase domain-containing protein n=2 Ta... [more]
A0A7S4HQN7_9STRA6.570e-1269.05Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7R9VV51_9STRA1.330e-1164.29Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S2HKF4_9STRA1.480e-1161.90Hypothetical protein n=2 Tax=Helicotheca tamesis T... [more]
A0A7S0N2B9_9CRYP1.580e-1165.22Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A7S1ZVR3_TRICV2.230e-1166.67Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S4SJR9_9DINO8.010e-1160.98Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
L1JRT6_GUITC2.950e-1060.87Fe2OG dioxygenase domain-containing protein n=3 Ta... [more]
A0A7S1W6S4_ALECA6.780e-1059.52Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A812RCR0_9DINO9.760e-1061.90P4H10 protein n=1 Tax=Symbiodinium sp. CCMP2592 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12107contigM-pyrifera_M_contig12107:149..286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.9
Seed ortholog evalue1.7e-13
Seed eggNOG ortholog2880.D8LI73
KEGG rclassRC00478
KEGG koko:K00472
KEGG ReactionR01252
KEGG Pathwayko00330,ko01100,map00330,map01100
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.procollagen-proline 4-dioxygenase activity
EggNOG OGsKOG1591@1,KOG1591@2759
EC1.14.11.2
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size138
Cds size138
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815730.0988216-CDS-M-pyrifera_M_contig12107:148..2861622815730.0988216-CDS-M-pyrifera_M_contig12107:148..286Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12107 149..286 +
1692277542.2984147-CDS-M-pyrifera_M_contig12107:148..2861692277542.2984147-CDS-M-pyrifera_M_contig12107:148..286Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12107 149..286 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12107.4341.1prot_M-pyrifera_M_contig12107.4341.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12107 149..286 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12107.4341.1

>prot_M-pyrifera_M_contig12107.4341.1 ID=prot_M-pyrifera_M_contig12107.4341.1|Name=mRNA_M-pyrifera_M_contig12107.4341.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=46bp
FLCVYRYLSDVEEGGETIFPRFGGRTGPVDFSDCTKGLKIKPVAG*
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mRNA from alignment at M-pyrifera_M_contig12107:149..286+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12107.4341.1 ID=mRNA_M-pyrifera_M_contig12107.4341.1|Name=mRNA_M-pyrifera_M_contig12107.4341.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=138bp|location=Sequence derived from alignment at M-pyrifera_M_contig12107:149..286+ (Macrocystis pyrifera P11B4 male)
TTCTTGTGTGTGTATAGGTATCTGAGCGATGTAGAAGAAGGGGGTGAAAC
GATATTCCCTCGTTTCGGGGGCCGCACCGGACCCGTCGACTTCTCCGACT
GCACCAAGGGGCTCAAGATTAAACCGGTGGCCGGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12107:149..286+

>mRNA_M-pyrifera_M_contig12107.4341.1 ID=mRNA_M-pyrifera_M_contig12107.4341.1|Name=mRNA_M-pyrifera_M_contig12107.4341.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=276bp|location=Sequence derived from alignment at M-pyrifera_M_contig12107:149..286+ (Macrocystis pyrifera P11B4 male)
TTCTTGTGTGTGTATAGGTATCTGAGCGATGTAGAAGAAGGGGGTGAAAC
GATATTCCCTCGTTTCGGGGGCCGCACCGGACCCGTCGACTTCTCCGACT
GCACCAAGGGGCTCAAGATTAAACCGGTGGCCGGGTGATTCTTGTGTGTG
TATAGGTATCTGAGCGATGTAGAAGAAGGGGGTGAAACGATATTCCCTCG
TTTCGGGGGCCGCACCGGACCCGTCGACTTCTCCGACTGCACCAAGGGGC
TCAAGATTAAACCGGTGGCCGGGTGA
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