mRNA_M-pyrifera_M_contig121054.4340.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121054.4340.1
Unique NamemRNA_M-pyrifera_M_contig121054.4340.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig121054.4340.1 vs. uniprot
Match: A0A1R1BUN2_9BACL (SLH domain-containing protein n=3 Tax=Paenibacillus TaxID=44249 RepID=A0A1R1BUN2_9BACL)

HSP 1 Score: 64.3 bits (155), Expect = 6.690e-9
Identity = 42/135 (31.11%), Postives = 66/135 (48.89%), Query Frame = 1 
Query:    7 FDLNVEYASVEETVTDLQTLQAVMGQHAPIRLEMGNEFYLSSYRWRFPNATSYLQWILPVISAARSIFPNATIAVV---------------ASNPRNPGEGCAGS---------WNEQLSKFRGHFDAVTLHDYT 339
            F LNV Y SVE+ + ++Q ++++  Q  PIR+EMGNEFYL+ Y   FP+ T+Y+     V +A + I P   + +V               A  P +P +    +         WN  ++     +DAV  H+YT
Sbjct:  636 FVLNVAYQSVEDIIDEVQQIRSLSQQ--PIRIEMGNEFYLNHYGNAFPSVTNYVYKARQVYTAIKQIDPTIKVGIVILDKWQETIIVGNPDAHKPNDPLDLVDTAHNRYVRWEEWNRTIAANPDCYDAVIPHEYT 768
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BLAST of mRNA_M-pyrifera_M_contig121054.4340.1 vs. uniprot
Match: UPI001490F204 (S-layer homology domain-containing protein n=1 Tax=Paenibacillus phytohabitans TaxID=2654978 RepID=UPI001490F204)

HSP 1 Score: 64.3 bits (155), Expect = 6.690e-9
Identity = 42/135 (31.11%), Postives = 66/135 (48.89%), Query Frame = 1 
Query:    7 FDLNVEYASVEETVTDLQTLQAVMGQHAPIRLEMGNEFYLSSYRWRFPNATSYLQWILPVISAARSIFPNATIAVV---------------ASNPRNPG--EGCAGS-------WNEQLSKFRGHFDAVTLHDYT 339
            F LNV + SVEE   +++ + ++  Q  P+R+EMGNEFYL+ Y  +FP+ T Y+     V  A + I P+  + +V               +  P +P   E  AG+       WN  ++     +DAV  H+YT
Sbjct:  640 FVLNVAFQSVEEITAEVEEIVSLSDQ--PVRIEMGNEFYLNKYGGQFPSVTDYVYKARDVYHAIKDIDPDIQVGIVILDKWQETIIVKDPDSHKPNDPLDLEDTAGNRYVRWEEWNRTIAANPDIYDAVIPHEYT 772
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BLAST of mRNA_M-pyrifera_M_contig121054.4340.1 vs. uniprot
Match: UPI00111EFD2B (S-layer homology domain-containing protein n=1 Tax=Paenibacillus paridis TaxID=2583376 RepID=UPI00111EFD2B)

HSP 1 Score: 63.5 bits (153), Expect = 1.240e-8
Identity = 41/135 (30.37%), Postives = 65/135 (48.15%), Query Frame = 1 
Query:    7 FDLNVEYASVEETVTDLQTLQAVMGQHAPIRLEMGNEFYLSSYRWRFPNATSYLQWILPVISAARSIFPNATIAVV---------------ASNPRNPG--EGCAGS-------WNEQLSKFRGHFDAVTLHDYT 339
            F +NV Y +V+E    ++ +Q++  Q  P+R+EMGNEFYL+ Y   FP+ T Y+     V +A + I PN  + +V               +  P +P   E  A +       WN  ++     +DAV  H+YT
Sbjct:  636 FVVNVAYQTVQEITEQVEEIQSLSDQ--PVRIEMGNEFYLNHYGDEFPSVTDYVAKAALVYAAIKGIDPNIKVGIVILDKWQETIIVKDPDSHKPNDPLDLEDTANNRYVRWEEWNRTIADHPDIYDAVVPHEYT 768
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BLAST of mRNA_M-pyrifera_M_contig121054.4340.1 vs. uniprot
Match: A0A5C8M762_9BACL (SLH domain-containing protein n=2 Tax=Paenibacillus sp. N3.4 TaxID=2603222 RepID=A0A5C8M762_9BACL)

HSP 1 Score: 61.2 bits (147), Expect = 7.770e-8
Identity = 41/135 (30.37%), Postives = 65/135 (48.15%), Query Frame = 1 
Query:    7 FDLNVEYASVEETVTDLQTLQAVMGQHAPIRLEMGNEFYLSSYRWRFPNATSYLQWILPVISAARSIFPNATIAVV---------------ASNPRNPGEGCAGS---------WNEQLSKFRGHFDAVTLHDYT 339
            F LNV Y SVE+ + +++ ++++  Q  PIR+EMGNEFYL+ Y   FP+ T Y+     V +A + I P   + +V               A  P +P +    +         WN  ++     +DAV  H+YT
Sbjct:  643 FVLNVAYQSVEDIIEEVKQIRSLSQQ--PIRIEMGNEFYLNHYGNAFPSVTDYVVKARNVYTAIKHIDPTIKVGIVILDKWQETIIVGNPDAHKPNDPLDLVDTAHNRYVRWEEWNRTIAANPDIYDAVIPHEYT 775
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121054.4340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A1R1BUN2_9BACL6.690e-931.11SLH domain-containing protein n=3 Tax=Paenibacillu... [more]
UPI001490F2046.690e-931.11S-layer homology domain-containing protein n=1 Tax... [more]
UPI00111EFD2B1.240e-830.37S-layer homology domain-containing protein n=1 Tax... [more]
A0A5C8M762_9BACL7.770e-830.37SLH domain-containing protein n=2 Tax=Paenibacillu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121054contigM-pyrifera_M_contig121054:30..533 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size504
Cds size504
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815730.0700037-CDS-M-pyrifera_M_contig121054:29..5331622815730.0700037-CDS-M-pyrifera_M_contig121054:29..533Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121054 30..533 +
1692277542.288435-CDS-M-pyrifera_M_contig121054:29..5331692277542.288435-CDS-M-pyrifera_M_contig121054:29..533Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121054 30..533 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121054.4340.1prot_M-pyrifera_M_contig121054.4340.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121054 30..533 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121054.4340.1

>prot_M-pyrifera_M_contig121054.4340.1 ID=prot_M-pyrifera_M_contig121054.4340.1|Name=mRNA_M-pyrifera_M_contig121054.4340.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=168bp
PIFDLNVEYASVEETVTDLQTLQAVMGQHAPIRLEMGNEFYLSSYRWRFP
NATSYLQWILPVISAARSIFPNATIAVVASNPRNPGEGCAGSWNEQLSKF
RGHFDAVTLHDYTMNSVWLNSTFPEASNDTKTSIILGFAEAYVRNAAENI
ASCFSPDTPILQTEFNYA
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mRNA from alignment at M-pyrifera_M_contig121054:30..533+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121054.4340.1 ID=mRNA_M-pyrifera_M_contig121054.4340.1|Name=mRNA_M-pyrifera_M_contig121054.4340.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig121054:30..533+ (Macrocystis pyrifera P11B4 male)
CCCATCTTCGACCTCAACGTGGAGTATGCGAGTGTAGAGGAAACAGTGAC
GGATCTACAGACGCTGCAAGCCGTGATGGGACAGCATGCCCCGATACGCC
TCGAAATGGGAAACGAATTCTACCTGTCCTCCTACCGCTGGCGGTTCCCA
AACGCCACCAGCTACCTGCAGTGGATTTTGCCGGTAATCTCCGCTGCTCG
ATCCATTTTTCCAAACGCCACCATTGCAGTCGTGGCTTCGAATCCGCGAA
ACCCAGGGGAAGGGTGTGCGGGGTCGTGGAACGAGCAACTGAGCAAGTTT
CGAGGCCACTTTGACGCCGTCACGCTGCACGACTACACCATGAACTCGGT
CTGGCTCAACTCCACGTTTCCCGAGGCTTCCAATGATACCAAAACCTCCA
TCATCCTCGGATTCGCTGAAGCTTACGTCAGAAACGCCGCAGAAAATATT
GCCTCCTGCTTCTCTCCTGACACTCCCATCCTCCAAACAGAGTTCAACTA
CGCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121054:30..533+

>mRNA_M-pyrifera_M_contig121054.4340.1 ID=mRNA_M-pyrifera_M_contig121054.4340.1|Name=mRNA_M-pyrifera_M_contig121054.4340.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1008bp|location=Sequence derived from alignment at M-pyrifera_M_contig121054:30..533+ (Macrocystis pyrifera P11B4 male)
CCCATCTTCGACCTCAACGTGGAGTATGCGAGTGTAGAGGAAACAGTGAC
GGATCTACAGACGCTGCAAGCCGTGATGGGACAGCATGCCCCGATACGCC
TCGAAATGGGAAACGAATTCTACCTGTCCTCCTACCGCTGGCGGTTCCCA
AACGCCACCAGCTACCTGCAGTGGATTTTGCCGGTAATCTCCGCTGCTCG
ATCCATTTTTCCAAACGCCACCATTGCAGTCGTGGCTTCGAATCCGCGAA
ACCCAGGGGAAGGGTGTGCGGGGTCGTGGAACGAGCAACTGAGCAAGTTT
CGAGGCCACTTTGACGCCGTCACGCTGCACGACTACACCATGAACTCGGT
CTGGCTCAACTCCACGTTTCCCGAGGCTTCCAATGATACCAAAACCTCCA
TCATCCTCGGATTCGCTGAAGCTTACGTCAGAAACGCCGCAGAAAATATT
GCCTCCTGCTTCTCTCCTGACACTCCCATCCTCCAAACAGAGTTCAACTA
CGCACCCATCTTCGACCTCAACGTGGAGTATGCGAGTGTAGAGGAAACAG
TGACGGATCTACAGACGCTGCAAGCCGTGATGGGACAGCATGCCCCGATA
CGCCTCGAAATGGGAAACGAATTCTACCTGTCCTCCTACCGCTGGCGGTT
CCCAAACGCCACCAGCTACCTGCAGTGGATTTTGCCGGTAATCTCCGCTG
CTCGATCCATTTTTCCAAACGCCACCATTGCAGTCGTGGCTTCGAATCCG
CGAAACCCAGGGGAAGGGTGTGCGGGGTCGTGGAACGAGCAACTGAGCAA
GTTTCGAGGCCACTTTGACGCCGTCACGCTGCACGACTACACCATGAACT
CGGTCTGGCTCAACTCCACGTTTCCCGAGGCTTCCAATGATACCAAAACC
TCCATCATCCTCGGATTCGCTGAAGCTTACGTCAGAAACGCCGCAGAAAA
TATTGCCTCCTGCTTCTCTCCTGACACTCCCATCCTCCAAACAGAGTTCA
ACTACGCA
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