mRNA_M-pyrifera_M_contig121044.4338.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121044.4338.1
Unique NamemRNA_M-pyrifera_M_contig121044.4338.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig121044.4338.1 vs. uniprot
Match: A0A812QRD1_9DINO (Dcd1B protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812QRD1_9DINO)

HSP 1 Score: 103 bits (258), Expect = 3.670e-24
Identity = 50/107 (46.73%), Postives = 68/107 (63.55%), Query Frame = 1
Query:    7 VNIYNPKNYPTDGD-HPRFDDLVYVDKHVQPSSHQCLPALMQQFYGKIDGPTAIQ-VAAMEASGNMHAAIYDWGSRTFYISNASPTQDGPVVPAYERQFLSLDMDTQ 321
            VNIYN  N+P     HP   DLV++DKH QPS H C  +LM++ YGK+     I  V A++ +G+ HAA+YD+G+ T Y+SNASP  +G   PAY   + SL+M  Q
Sbjct:  249 VNIYNDVNFPAYPPYHPLLKDLVFIDKHTQPSHHMCFGSLMEKLYGKLSPQNVISYVTALQQTGDTHAAVYDFGTSTMYVSNASPFVNGSATPAYNMPWSSLNMTQQ 355          
BLAST of mRNA_M-pyrifera_M_contig121044.4338.1 vs. uniprot
Match: A0A6B2L4U1_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L4U1_9EUKA)

HSP 1 Score: 102 bits (254), Expect = 2.790e-23
Identity = 51/113 (45.13%), Postives = 71/113 (62.83%), Query Frame = 1
Query:    1 EYVNIYNPKNYPTDGDHPRFDDLVYVDKHVQPSSHQCLPALMQQFYGKIDGPTAIQ-VAAMEASGNMHAAIYDWGSRTFYISNASPTQDGPVVPAYERQFLSLDMDTQLFDAT 336
            +Y+ +Y+  NYP    HP+  +LVYV+KH QPS   CL   +Q+ YG ID    I+ VAA   +G+ HAA+YD+   + Y+S ASP  +G  VPAY+RQ+   +M TQLF  T
Sbjct:  321 DYIQVYDDVNYPVYEGHPKMKNLVYVNKHKQPSKEPCLGEALQEGYGSIDAEYLIRYVAAPHQTGDSHAAVYDFAQDSIYVSIASPYINGSFVPAYDRQYTKFNM-TQLFSET 432          
BLAST of mRNA_M-pyrifera_M_contig121044.4338.1 vs. uniprot
Match: A0A813A3I2_SYMMI (Dcd1A protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A813A3I2_SYMMI)

HSP 1 Score: 100 bits (248), Expect = 6.690e-23
Identity = 50/103 (48.54%), Postives = 69/103 (66.99%), Query Frame = 1
Query:    7 VNIYNPKNYPTDGD-HPRFDDLVYVDKHVQPSSHQCLPALMQQFYGKIDGPTAIQVAAMEASGNMHAAIYDWGSRTFYISNASPT-QDGPVVPAYERQFLSLD 309
            V++YNPKN+P     H RF DLV+VDKHVQPS H CL  LM Q++G +D P A+QV+A+  +G++HAA+YD+ +    IS   PT  DG   PA+   + S+D
Sbjct:  218 VDVYNPKNFPVYPPYHDRFQDLVFVDKHVQPSHHMCLNELMHQYWGNLDAPGAVQVSAVHGTGDLHAAVYDYANDQMVIS--VPTFVDGSWRPAHASPWFSMD 318          
BLAST of mRNA_M-pyrifera_M_contig121044.4338.1 vs. uniprot
Match: A0A5A8EIA4_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EIA4_CAFRO)

HSP 1 Score: 100 bits (249), Expect = 1.340e-22
Identity = 48/102 (47.06%), Postives = 68/102 (66.67%), Query Frame = 1
Query:    7 VNIYNPKNYPTDGD-HPRFDDLVYVDKHVQPSSHQCLPALMQQFYGKIDGPTAIQVAAMEASGNMHAAIYDWGSRTFYISNASPTQDGPVVPAYERQFLSLD 309
            V++YNPKN+P     H RF DLV+VDKHVQPS H CL  LM Q++G +D P A+QV+A+  +G++HAA+YD+ +    IS  +   DG   PA+   + S+D
Sbjct:  312 VDVYNPKNFPVYPPYHDRFQDLVFVDKHVQPSHHMCLNELMHQYWGNLDAPGAVQVSAVHGTGDLHAAVYDYANDQMVIS-VTTFVDGSWRPAHASPWFSMD 412          
BLAST of mRNA_M-pyrifera_M_contig121044.4338.1 vs. uniprot
Match: A0A5A8EJW6_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EJW6_CAFRO)

HSP 1 Score: 100 bits (248), Expect = 1.470e-22
Identity = 50/103 (48.54%), Postives = 69/103 (66.99%), Query Frame = 1
Query:    7 VNIYNPKNYPTDGD-HPRFDDLVYVDKHVQPSSHQCLPALMQQFYGKIDGPTAIQVAAMEASGNMHAAIYDWGSRTFYISNASPT-QDGPVVPAYERQFLSLD 309
            V++YNPKN+P     H RF DLV+VDKHVQPS H CL  LM Q++G +D P A+QV+A+  +G++HAA+YD+ +    IS   PT  DG   PA+   + S+D
Sbjct:  285 VDVYNPKNFPVYPPYHDRFQDLVFVDKHVQPSHHMCLNELMHQYWGNLDAPGAVQVSAVHGTGDLHAAVYDYANDQMVIS--VPTFVDGSWRPAHASPWFSMD 385          
BLAST of mRNA_M-pyrifera_M_contig121044.4338.1 vs. uniprot
Match: A0A5A8DQF9_CAFRO (Uncharacterized protein n=2 Tax=Sar TaxID=2698737 RepID=A0A5A8DQF9_CAFRO)

HSP 1 Score: 100 bits (249), Expect = 2.760e-22
Identity = 48/102 (47.06%), Postives = 68/102 (66.67%), Query Frame = 1
Query:    7 VNIYNPKNYPTDGD-HPRFDDLVYVDKHVQPSSHQCLPALMQQFYGKIDGPTAIQVAAMEASGNMHAAIYDWGSRTFYISNASPTQDGPVVPAYERQFLSLD 309
            V++YNPKN+P     H RF DLV+VDKHVQPS H CL  LM Q++G +D P A+QV+A+  +G++HAA+YD+ +    IS  +   DG   PA+   + S+D
Sbjct:  312 VDVYNPKNFPVYPPYHDRFQDLVFVDKHVQPSHHMCLNELMHQYWGNLDAPGAVQVSAVHGTGDLHAAVYDYANDQMVIS-VTTFVDGSWRPAHASPWFSMD 412          
BLAST of mRNA_M-pyrifera_M_contig121044.4338.1 vs. uniprot
Match: A0A482RJ26_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RJ26_9ARCH)

HSP 1 Score: 95.9 bits (237), Expect = 1.070e-21
Identity = 48/101 (47.52%), Postives = 64/101 (63.37%), Query Frame = 1
Query:   49 HPRFDDLVYVDKHVQPSSHQCLPALMQQFYGKIDGPTAIQ-VAAMEASGNMHAAIYDWGSRTFYISNAS-PTQDGPVVPAYERQFLSLDMDTQLFDATLAH 345
            H  F DL++VDKHVQPS++ C   LM Q+YGK+DGPT  Q V + E +G+MH AI DW  +  YISNA      G   PAY R FL  +M T L+  ++++
Sbjct:  172 HDLFTDLIFVDKHVQPSANPCFNNLMHQYYGKLDGPTIAQFVTSQEQTGDMHIAIMDWAQQFMYISNAGIANAAGSATPAYNRPFLRFNM-TSLWSTSMSN 271          
BLAST of mRNA_M-pyrifera_M_contig121044.4338.1 vs. uniprot
Match: A9UWH9_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9UWH9_MONBE)

HSP 1 Score: 95.9 bits (237), Expect = 7.180e-21
Identity = 54/125 (43.20%), Postives = 76/125 (60.80%), Query Frame = 1
Query:    1 EYVNIYNPKNYPTD-GDHPRFDDLVYVDKHVQPSSHQCLPALMQQFYGKIDGPTAIQ-VAAMEASGNMHAAIYDWGSRTFYISNAS---------PTQDGPVVPAYERQFLSLDMDTQLFDATLA 342
            E V +Y+ KNYP+    HP FD LV+++KHVQPSS  C+ +LM ++YG +D  T I+ V    ASG+MHAA YD+G+   ++S A             DGP+ PA+ R +  LDM+ +LF  T A
Sbjct:  317 EEVLVYDDKNYPSYLPAHPLFDGLVFINKHVQPSSDTCMGSLMTKYYGSLDAETTIRNVLGNTASGDMHAAFYDYGNNVIHVSVAGLPVANDGNGTVIDGPMAPAHARPWFRLDME-KLFAQTQA 440          
BLAST of mRNA_M-pyrifera_M_contig121044.4338.1 vs. uniprot
Match: F0Z798_DICPU (Uncharacterized protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0Z798_DICPU)

HSP 1 Score: 95.5 bits (236), Expect = 9.210e-21
Identity = 46/117 (39.32%), Postives = 71/117 (60.68%), Query Frame = 1
Query:    1 EYVNIYN-----PKNYPTDGDHPRFDDLVYVDKHVQPSSHQCLPALMQQFYGKIDGPTAIQVAAMEASGNMHAAIYDWGSRTFYISNASPTQDGP-------VVPAYERQFLSLDMD 315
            +YV +++     P   PT   HP+  D+VY+DK VQPS+HQCL +++Q+ +G ID    I  AA   +G++H  +YD+    FY+S    TQ+GP       +VPAY RQF+ +D++
Sbjct:  311 QYVRVFDDQTPFPAYAPTPAAHPQITDVVYIDKFVQPSNHQCLASVLQKSWGSIDATALINAAAQLQTGDLHIGLYDFAENQFYVSVG--TQEGPLGNPNITIVPAYARQFIQVDLN 425          
BLAST of mRNA_M-pyrifera_M_contig121044.4338.1 vs. uniprot
Match: DCD1A_DICDI (Protein dcd1A n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=DCD1A_DICDI)

HSP 1 Score: 91.7 bits (226), Expect = 2.440e-19
Identity = 47/119 (39.50%), Postives = 69/119 (57.98%), Query Frame = 1
Query:    1 EYVNIYN-----PKNYPTDGDHPRFDDLVYVDKHVQPSSHQCLPALMQQFYGKIDGPTAIQVAAMEASGNMHAAIYDWGSRTFYISNASPTQDGP--------VVPAYERQFLSLDMDT 318
            EYV +++     P   PT   HP   D+VY+DK VQPS+HQCL +++Q+  G ID  + I  AA   +G++H  IYD+     Y+S    TQ GP        +VPAY RQF+ +D+++
Sbjct:  321 EYVRVFDDQTPFPSYVPTPSAHPVIQDVVYIDKFVQPSNHQCLASVLQKSLGSIDVTSLINAAAQLQTGDIHIGIYDYQQNQMYVSVG--TQSGPYPPPSNFTIVPAYARQFIQIDLNS 437          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121044.4338.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812QRD1_9DINO3.670e-2446.73Dcd1B protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A6B2L4U1_9EUKA2.790e-2345.13Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
A0A813A3I2_SYMMI6.690e-2348.54Dcd1A protein n=1 Tax=Symbiodinium microadriaticum... [more]
A0A5A8EIA4_CAFRO1.340e-2247.06Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A5A8EJW6_CAFRO1.470e-2248.54Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A5A8DQF9_CAFRO2.760e-2247.06Uncharacterized protein n=2 Tax=Sar TaxID=2698737 ... [more]
A0A482RJ26_9ARCH1.070e-2147.52Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A9UWH9_MONBE7.180e-2143.20Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
F0Z798_DICPU9.210e-2139.32Uncharacterized protein n=1 Tax=Dictyostelium purp... [more]
DCD1A_DICDI2.440e-1939.50Protein dcd1A n=1 Tax=Dictyostelium discoideum Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121044contigM-pyrifera_M_contig121044:2..352 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score101.7
Seed ortholog evalue2.4e-19
Seed eggNOG ortholog192875.XP_004346643.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2BWDD@1,2RA4J@2759,3AG6M@33154
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size351
Cds size351
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815729.9904497-CDS-M-pyrifera_M_contig121044:1..3521622815729.9904497-CDS-M-pyrifera_M_contig121044:1..352Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121044 2..352 +
1692277542.2469826-CDS-M-pyrifera_M_contig121044:1..3521692277542.2469826-CDS-M-pyrifera_M_contig121044:1..352Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121044 2..352 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121044.4338.1prot_M-pyrifera_M_contig121044.4338.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121044 2..352 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121044.4338.1

>prot_M-pyrifera_M_contig121044.4338.1 ID=prot_M-pyrifera_M_contig121044.4338.1|Name=mRNA_M-pyrifera_M_contig121044.4338.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=117bp
EYVNIYNPKNYPTDGDHPRFDDLVYVDKHVQPSSHQCLPALMQQFYGKID
GPTAIQVAAMEASGNMHAAIYDWGSRTFYISNASPTQDGPVVPAYERQFL
SLDMDTQLFDATLAHA*
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mRNA from alignment at M-pyrifera_M_contig121044:2..352+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121044.4338.1 ID=mRNA_M-pyrifera_M_contig121044.4338.1|Name=mRNA_M-pyrifera_M_contig121044.4338.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=351bp|location=Sequence derived from alignment at M-pyrifera_M_contig121044:2..352+ (Macrocystis pyrifera P11B4 male)
GAGTATGTCAACATTTACAACCCAAAGAACTACCCCACAGATGGAGACCA TCCACGGTTCGATGACCTTGTCTATGTGGACAAGCACGTGCAGCCATCCT CCCACCAATGCCTCCCAGCACTCATGCAACAGTTCTATGGCAAGATTGAC GGACCAACGGCCATCCAAGTTGCTGCCATGGAAGCATCTGGAAACATGCA TGCTGCCATCTACGACTGGGGATCCAGGACGTTCTACATCTCCAACGCAT CACCAACCCAAGACGGACCAGTGGTCCCAGCGTACGAGAGGCAATTCCTT TCTCTCGACATGGACACACAACTCTTCGATGCCACCCTCGCACATGCCTA G
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121044:2..352+

>mRNA_M-pyrifera_M_contig121044.4338.1 ID=mRNA_M-pyrifera_M_contig121044.4338.1|Name=mRNA_M-pyrifera_M_contig121044.4338.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=702bp|location=Sequence derived from alignment at M-pyrifera_M_contig121044:2..352+ (Macrocystis pyrifera P11B4 male)
GAGTATGTCAACATTTACAACCCAAAGAACTACCCCACAGATGGAGACCA
TCCACGGTTCGATGACCTTGTCTATGTGGACAAGCACGTGCAGCCATCCT
CCCACCAATGCCTCCCAGCACTCATGCAACAGTTCTATGGCAAGATTGAC
GGACCAACGGCCATCCAAGTTGCTGCCATGGAAGCATCTGGAAACATGCA
TGCTGCCATCTACGACTGGGGATCCAGGACGTTCTACATCTCCAACGCAT
CACCAACCCAAGACGGACCAGTGGTCCCAGCGTACGAGAGGCAATTCCTT
TCTCTCGACATGGACACACAACTCTTCGATGCCACCCTCGCACATGCCTA
GGAGTATGTCAACATTTACAACCCAAAGAACTACCCCACAGATGGAGACC
ATCCACGGTTCGATGACCTTGTCTATGTGGACAAGCACGTGCAGCCATCC
TCCCACCAATGCCTCCCAGCACTCATGCAACAGTTCTATGGCAAGATTGA
CGGACCAACGGCCATCCAAGTTGCTGCCATGGAAGCATCTGGAAACATGC
ATGCTGCCATCTACGACTGGGGATCCAGGACGTTCTACATCTCCAACGCA
TCACCAACCCAAGACGGACCAGTGGTCCCAGCGTACGAGAGGCAATTCCT
TTCTCTCGACATGGACACACAACTCTTCGATGCCACCCTCGCACATGCCT
AG
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