mRNA_M-pyrifera_M_contig121022.4329.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121022.4329.1
Unique NamemRNA_M-pyrifera_M_contig121022.4329.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig121022.4329.1 vs. uniprot
Match: A0A517PRU9_9PLAN (Rhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase n=4 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517PRU9_9PLAN)

HSP 1 Score: 232 bits (592), Expect = 1.730e-72
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 1
Query:    1 LFHSRRCYICKKSYQKLHSFYDLMCESCGQENYRKRLQTADLTGRTAVVTGGRVKIGFQIALKLLRSGARVWVTSRFPCDTARRYAAETDFADWYDRLQILGSDFRSLASVN 336
            LFHSRRCYICKKSYQKLHSFYDLMCESCGQENYRKRLQTADLTGRTAVVTGGRVKIGFQIALKLLRSGARVWVTSRFPCDTARRYAAETDFADWYDRLQILGSDFRSLASVN
Sbjct:  110 LFHSRRCYICKKSYQKLHSFYDLMCESCGQENYRKRLQTADLTGRTAVVTGGRVKIGFQIALKLLRSGARVWVTSRFPCDTARRYAAETDFADWYDRLQILGSDFRSLASVN 221          
BLAST of mRNA_M-pyrifera_M_contig121022.4329.1 vs. uniprot
Match: A0A518A992_9PLAN (Fatty acyl-CoA reductase n=5 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A992_9PLAN)

HSP 1 Score: 199 bits (505), Expect = 1.600e-59
Identity = 95/112 (84.82%), Postives = 101/112 (90.18%), Query Frame = 1
Query:    1 LFHSRRCYICKKSYQKLHSFYDLMCESCGQENYRKRLQTADLTGRTAVVTGGRVKIGFQIALKLLRSGARVWVTSRFPCDTARRYAAETDFADWYDRLQILGSDFRSLASVN 336
            L HSRRCYICK+SYQ+LH FYDLMC SCGQENY+KR QTADL GR AVVTGGRVKIGFQIALKLLRSGARV VTSRFPCD ARRYAAETDF +W+DRLQ+ GSDFRSL SVN
Sbjct:  110 LHHSRRCYICKRSYQQLHPFYDLMCASCGQENYQKRTQTADLAGRIAVVTGGRVKIGFQIALKLLRSGARVLVTSRFPCDAARRYAAETDFEEWHDRLQVFGSDFRSLQSVN 221          
BLAST of mRNA_M-pyrifera_M_contig121022.4329.1 vs. uniprot
Match: A0A517RIN9_9PLAN (3-ketoacyl-(Acyl-carrier-protein) reductase n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RIN9_9PLAN)

HSP 1 Score: 184 bits (468), Expect = 5.120e-54
Identity = 89/111 (80.18%), Postives = 94/111 (84.68%), Query Frame = 1
Query:    1 LFHSRRCYICKKSYQKLHSFYDLMCESCGQENYRKRLQTADLTGRTAVVTGGRVKIGFQIALKLLRSGARVWVTSRFPCDTARRYAAETDFADWYDRLQILGSDFRSLASV 333
            L HSRRCYICK+ YQ+LH FYDLMC  CG EN+RKR QTADL+GRTA+VTGGRVKIGFQ ALKLLR GARV VTSRFPCD  RRYAAE DFADW DRLQI G DFRSL SV
Sbjct:  110 LCHSRRCYICKQPYQQLHPFYDLMCMDCGDENFRKRSQTADLSGRTAIVTGGRVKIGFQTALKLLRGGARVLVTSRFPCDAVRRYAAENDFADWSDRLQISGCDFRSLKSV 220          
BLAST of mRNA_M-pyrifera_M_contig121022.4329.1 vs. uniprot
Match: A0A2H0PG10_9DELT (Oxidoreductase n=1 Tax=Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_47_16 TaxID=1973975 RepID=A0A2H0PG10_9DELT)

HSP 1 Score: 145 bits (365), Expect = 6.640e-39
Identity = 66/108 (61.11%), Postives = 81/108 (75.00%), Query Frame = 1
Query:   10 SRRCYICKKSYQKLHSFYDLMCESCGQENYRKRLQTADLTGRTAVVTGGRVKIGFQIALKLLRSGARVWVTSRFPCDTARRYAAETDFADWYDRLQILGSDFRSLASV 333
            SRRCY+CK  Y +LH FYD MC+ CG  NY+KR QTADLTG+ A++TG R+KIG+Q +L +LR+GARV  T+RFP D A RYA E DFA+W DRLQ+ G D R   SV
Sbjct:  106 SRRCYVCKADYTQLHPFYDSMCQPCGDFNYQKRFQTADLTGQVALITGARLKIGYQASLMMLRAGARVIATTRFPIDAAHRYAREADFAEWGDRLQVHGLDLRHTPSV 213          
BLAST of mRNA_M-pyrifera_M_contig121022.4329.1 vs. uniprot
Match: A0A2S9YE67_9DELT (Fatty acyl-CoA reductase n=1 Tax=Enhygromyxa salina TaxID=215803 RepID=A0A2S9YE67_9DELT)

HSP 1 Score: 144 bits (364), Expect = 7.050e-39
Identity = 67/107 (62.62%), Postives = 82/107 (76.64%), Query Frame = 1
Query:   13 RRCYICKKSYQKLHSFYDLMCESCGQENYRKRLQTADLTGRTAVVTGGRVKIGFQIALKLLRSGARVWVTSRFPCDTARRYAAETDFADWYDRLQILGSDFRSLASV 333
            R CY+CK  + ++H FYD +C+ CG+ N+ +R QTADL GRTA++TG RVKIG+Q A+KLLR+GARV VT+RFP D ARRYAAE DFADW DRL I G D R   SV
Sbjct:  112 RSCYVCKTRFTRVHHFYDRLCQDCGELNFERRHQTADLRGRTALITGARVKIGYQAAIKLLRAGARVLVTTRFPHDAARRYAAEDDFADWSDRLAIHGVDLRHTPSV 218          
BLAST of mRNA_M-pyrifera_M_contig121022.4329.1 vs. uniprot
Match: A0A7V9TNF7_9BACT (SDR family NAD(P)-dependent oxidoreductase (Fragment) n=1 Tax=Gemmatimonadaceae bacterium TaxID=2026741 RepID=A0A7V9TNF7_9BACT)

HSP 1 Score: 139 bits (349), Expect = 1.160e-38
Identity = 63/108 (58.33%), Postives = 80/108 (74.07%), Query Frame = 1
Query:   10 SRRCYICKKSYQKLHSFYDLMCESCGQENYRKRLQTADLTGRTAVVTGGRVKIGFQIALKLLRSGARVWVTSRFPCDTARRYAAETDFADWYDRLQILGSDFRSLASV 333
            +R CY CK+ Y  +H FYD +C  CG  N+ KR +TADLTGR A++TGGRVKIG+Q  +KLLR+GA + VT+RFP D+A RYA+E DFADW +RL+I G D R   SV
Sbjct:  118 ARNCYTCKRDYTTIHHFYDRLCPECGDFNFAKRTETADLTGRVALLTGGRVKIGYQAGIKLLRAGAHLIVTTRFPRDSAARYASEPDFADWSNRLEIFGLDLRHTPSV 225          
BLAST of mRNA_M-pyrifera_M_contig121022.4329.1 vs. uniprot
Match: A0A7V2UW73_9BACT (SDR family oxidoreductase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7V2UW73_9BACT)

HSP 1 Score: 144 bits (363), Expect = 1.360e-38
Identity = 70/107 (65.42%), Postives = 81/107 (75.70%), Query Frame = 1
Query:   13 RRCYICKKSYQKLHSFYDLMCESCGQENYRKRLQTADLTGRTAVVTGGRVKIGFQIALKLLRSGARVWVTSRFPCDTARRYAAETDFADWYDRLQILGSDFRSLASV 333
            R CY+CK SY + H FYD +C  C   NY KR QTADLTGR+A++TG R+KIG+Q ALKLLR+GARV VT+RFP D ARRYAAETDFADW  RL+I G D R   SV
Sbjct:  113 RVCYVCKGSYTRRHHFYDGLCPDCADFNYAKRFQTADLTGRSALITGARLKIGYQAALKLLRAGARVIVTTRFPHDAARRYAAETDFADWGGRLRIHGLDLRHAPSV 219          
BLAST of mRNA_M-pyrifera_M_contig121022.4329.1 vs. uniprot
Match: A0A7S3Z4H8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z4H8_9EUKA)

HSP 1 Score: 134 bits (338), Expect = 1.500e-38
Identity = 63/111 (56.76%), Postives = 77/111 (69.37%), Query Frame = 1
Query:    1 LFHSRRCYICKKSYQKLHSFYDLMCESCGQENYRKRLQTADLTGRTAVVTGGRVKIGFQIALKLLRSGARVWVTSRFPCDTARRYAAETDFADWYDRLQILGSDFRSLASV 333
            LF+ R CYICK+ Y+ LHSFYD +C +C   NY KR QTADL G+  +VTGGRVKIG+   LKLLR+G    VT+RFP D A R+A E D+ DW  R+ I G DFR+L  V
Sbjct:   11 LFNPRSCYICKRRYRCLHSFYDQLCPTCASLNYTKRFQTADLKGKVGLVTGGRVKIGYHTVLKLLRAGCHTIVTTRFPTDAALRFAKEPDYKDWKGRVDIYGLDFRNLKGV 121          
BLAST of mRNA_M-pyrifera_M_contig121022.4329.1 vs. uniprot
Match: A0A662WUV4_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WUV4_9STRA)

HSP 1 Score: 141 bits (355), Expect = 2.850e-38
Identity = 68/112 (60.71%), Postives = 80/112 (71.43%), Query Frame = 1
Query:    1 LFHSRRCYICKKSYQKLHSFYDLMCESCGQENYRKRLQTADLTGRTAVVTGGRVKIGFQIALKLLRSGARVWVTSRFPCDTARRYAAETDFADWYDRLQILGSDFRSLASVN 336
            L + R CY CK  ++ LH FYD MC SC + NY+KRLQ ADL+G  A+VTG RVKIGF+I LKLLRSGA V  T+RFP D A RYA E DF +W DRLQI G DFR L  ++
Sbjct:  192 LHYHRACYTCKVKFRTLHHFYDRMCPSCAELNYKKRLQNADLSGHVAIVTGARVKIGFEITLKLLRSGATVVATTRFPKDAAFRYAKEQDFDNWKDRLQIYGMDFRDLGVID 303          
BLAST of mRNA_M-pyrifera_M_contig121022.4329.1 vs. uniprot
Match: UPI001666156A (SDR family oxidoreductase n=1 Tax=Deinococcus roseus TaxID=392414 RepID=UPI001666156A)

HSP 1 Score: 142 bits (358), Expect = 3.870e-38
Identity = 63/106 (59.43%), Postives = 85/106 (80.19%), Query Frame = 1
Query:   16 RCYICKKSYQKLHSFYDLMCESCGQENYRKRLQTADLTGRTAVVTGGRVKIGFQIALKLLRSGARVWVTSRFPCDTARRYAAETDFADWYDRLQILGSDFRSLASV 333
            RCY+CKK Y+++H FY L+C +C + N++KRLQ ADLTGR A++TGGR+KIG+Q+ L+LLR GARV VT+RFP D  +R+AAE DFA W DRL++ G DFR+L  +
Sbjct:  103 RCYVCKKPYREVHFFYHLLCPACARLNHQKRLQRADLTGRIALITGGRIKIGYQLCLRLLRDGARVIVTTRFPQDAVKRFAAEEDFAVWADRLEVHGLDFRNLIQL 208          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121022.4329.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A517PRU9_9PLAN1.730e-72100.00Rhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-... [more]
A0A518A992_9PLAN1.600e-5984.82Fatty acyl-CoA reductase n=5 Tax=Gimesia panareens... [more]
A0A517RIN9_9PLAN5.120e-5480.183-ketoacyl-(Acyl-carrier-protein) reductase n=1 Ta... [more]
A0A2H0PG10_9DELT6.640e-3961.11Oxidoreductase n=1 Tax=Deltaproteobacteria bacteri... [more]
A0A2S9YE67_9DELT7.050e-3962.62Fatty acyl-CoA reductase n=1 Tax=Enhygromyxa salin... [more]
A0A7V9TNF7_9BACT1.160e-3858.33SDR family NAD(P)-dependent oxidoreductase (Fragme... [more]
A0A7V2UW73_9BACT1.360e-3865.42SDR family oxidoreductase n=1 Tax=Planctomycetes b... [more]
A0A7S3Z4H8_9EUKA1.500e-3856.76Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
A0A662WUV4_9STRA2.850e-3860.71Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
UPI001666156A3.870e-3859.43SDR family oxidoreductase n=1 Tax=Deinococcus rose... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121022contigM-pyrifera_M_contig121022:2..337 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score141.0
Seed ortholog evalue3.5e-31
Seed eggNOG ortholog1249975.JQLP01000005_gene2386
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Enoyl-(Acyl carrier protein) reductase
EggNOG OGs1HXN7@117743,2P63Q@244698,4NFBX@976,COG1028@1,COG1028@2,COG4221@1,COG4221@2
COG Functional cat.IQ
Best tax levelGillisia
Best eggNOG OGNA|NA|NA
Exons1
Model size336
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815729.6017225-CDS-M-pyrifera_M_contig121022:1..3371622815729.6017225-CDS-M-pyrifera_M_contig121022:1..337Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121022 2..337 -
1692277542.0689173-CDS-M-pyrifera_M_contig121022:1..3371692277542.0689173-CDS-M-pyrifera_M_contig121022:1..337Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121022 2..337 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121022.4329.1prot_M-pyrifera_M_contig121022.4329.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121022 2..337 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121022.4329.1

>prot_M-pyrifera_M_contig121022.4329.1 ID=prot_M-pyrifera_M_contig121022.4329.1|Name=mRNA_M-pyrifera_M_contig121022.4329.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=112bp
LFHSRRCYICKKSYQKLHSFYDLMCESCGQENYRKRLQTADLTGRTAVVT
GGRVKIGFQIALKLLRSGARVWVTSRFPCDTARRYAAETDFADWYDRLQI
LGSDFRSLASVN
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mRNA from alignment at M-pyrifera_M_contig121022:2..337-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121022.4329.1 ID=mRNA_M-pyrifera_M_contig121022.4329.1|Name=mRNA_M-pyrifera_M_contig121022.4329.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=336bp|location=Sequence derived from alignment at M-pyrifera_M_contig121022:2..337- (Macrocystis pyrifera P11B4 male)
TTGTTTCACTCTCGCCGCTGTTATATCTGTAAGAAGTCGTACCAAAAGCT GCACTCATTTTATGATCTGATGTGCGAATCCTGCGGGCAGGAGAACTATC GGAAACGTTTACAGACCGCTGATCTTACGGGGCGGACAGCTGTGGTGACC GGCGGACGCGTCAAGATTGGCTTCCAGATTGCCTTGAAACTGTTACGCTC TGGAGCACGCGTCTGGGTGACGAGTCGGTTTCCGTGCGATACAGCACGTC GCTATGCTGCTGAAACGGATTTCGCAGATTGGTATGATCGTTTACAGATC CTGGGCAGTGATTTTCGCAGTCTCGCAAGTGTCAAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121022:2..337-

>mRNA_M-pyrifera_M_contig121022.4329.1 ID=mRNA_M-pyrifera_M_contig121022.4329.1|Name=mRNA_M-pyrifera_M_contig121022.4329.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig121022:2..337- (Macrocystis pyrifera P11B4 male)
TTGTTTCACTCTCGCCGCTGTTATATCTGTAAGAAGTCGTACCAAAAGCT
GCACTCATTTTATGATCTGATGTGCGAATCCTGCGGGCAGGAGAACTATC
GGAAACGTTTACAGACCGCTGATCTTACGGGGCGGACAGCTGTGGTGACC
GGCGGACGCGTCAAGATTGGCTTCCAGATTGCCTTGAAACTGTTACGCTC
TGGAGCACGCGTCTGGGTGACGAGTCGGTTTCCGTGCGATACAGCACGTC
GCTATGCTGCTGAAACGGATTTCGCAGATTGGTATGATCGTTTACAGATC
CTGGGCAGTGATTTTCGCAGTCTCGCAAGTGTCAATTTGTTTCACTCTCG
CCGCTGTTATATCTGTAAGAAGTCGTACCAAAAGCTGCACTCATTTTATG
ATCTGATGTGCGAATCCTGCGGGCAGGAGAACTATCGGAAACGTTTACAG
ACCGCTGATCTTACGGGGCGGACAGCTGTGGTGACCGGCGGACGCGTCAA
GATTGGCTTCCAGATTGCCTTGAAACTGTTACGCTCTGGAGCACGCGTCT
GGGTGACGAGTCGGTTTCCGTGCGATACAGCACGTCGCTATGCTGCTGAA
ACGGATTTCGCAGATTGGTATGATCGTTTACAGATCCTGGGCAGTGATTT
TCGCAGTCTCGCAAGTGTCAAT
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