mRNA_M-pyrifera_M_contig121020.4328.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig121020.4328.1 vs. uniprot
Match: A0A5A8CTF6_CAFRO (Uncharacterized protein n=2 Tax=Sar TaxID=2698737 RepID=A0A5A8CTF6_CAFRO) HSP 1 Score: 90.9 bits (224), Expect = 3.340e-19 Identity = 47/122 (38.52%), Postives = 66/122 (54.10%), Query Frame = 1
Query: 1 WHPNGQIVATAGCDYRVRVFSAYLPEADGEVPDSGPFG--EAAEFGTLLAEFD-----QPKTWVHDVVWAPSGNHLAFVTQASEVYVADFTEAATSGPALQEVRHTGLPHRTCEFLSDKALI 345
WHPN +VA GCDY R+ +A++ + G+ PD GPFG E EFG ++ + W++ W+PSGN LA+ TQAS+V F A Q +R GLP + F+ DK L+
Sbjct: 158 WHPNSMLVAAVGCDYHCRIAAAWVTDI-GDTPDVGPFGSAEGLEFGDMIVDRSISSDTTTAAWINAAAWSPSGNCLAYATQASDVC---FLSARGGAVTEQTIRVRGLPALSLAFIDDKTLV 275
BLAST of mRNA_M-pyrifera_M_contig121020.4328.1 vs. uniprot
Match: UPI00064520F9 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI00064520F9) HSP 1 Score: 90.1 bits (222), Expect = 5.090e-19 Identity = 46/115 (40.00%), Postives = 70/115 (60.87%), Query Frame = 1
Query: 1 WHPNGQIVATAGCDYRVRVFSAYLPEADGEVPDSGPFGEAAEFGTLLAEFDQPKTWVHDVVWAPSGNHLAFVTQASEVYVADFTEAATSGPALQEVRHTGLPHRTCEFLSDKALI 345
WHPN ++AT+ D++VRVF AY+ +ADG P+GE FG + EFDQ WVH + W+ SGN L F + S + VAD T ++ P +Q++R LP R F+++ +++
Sbjct: 152 WHPNNLLLATSSSDFKVRVFDAYVKDADGRQVQR-PYGEIP-FGQPIFEFDQCAGWVHALGWSASGNRLGFSSHDSTLAVADLT---SNPPTVQKLRLRNLPLRDLLFVTENSIV 261
BLAST of mRNA_M-pyrifera_M_contig121020.4328.1 vs. uniprot
Match: A0A6A5H4H5_CAERE (ANAPC4_WD40 domain-containing protein (Fragment) n=1 Tax=Caenorhabditis remanei TaxID=31234 RepID=A0A6A5H4H5_CAERE) HSP 1 Score: 88.2 bits (217), Expect = 1.370e-18 Identity = 43/115 (37.39%), Postives = 67/115 (58.26%), Query Frame = 1
Query: 1 WHPNGQIVATAGCDYRVRVFSAYLPEADGEVPDSGPFGEAAEFGTLLAEFDQPKTWVHDVVWAPSGNHLAFVTQASEVYVADFTEAATSGPALQEVRHTGLPHRTCEFLSDKALI 345
WHPN ++A CD++ RVFSAY+ E D E P P+G+ FG L++E+ WVH V ++PSG LAFV+ S V F ++ +Q +R LP T E++++ +++
Sbjct: 93 WHPNNVLLAVGSCDFKCRVFSAYVKEVD-EKPSPNPWGQKMPFGQLMSEYSVGG-WVHRVAFSPSGCRLAFVSHDSSV---SFVDSTVDSQKVQNLRTIHLPFTTVEWITENSVV 202
BLAST of mRNA_M-pyrifera_M_contig121020.4328.1 vs. uniprot
Match: A0A2G9TLX0_TELCI (WD domain, G-beta repeat protein (Fragment) n=1 Tax=Teladorsagia circumcincta TaxID=45464 RepID=A0A2G9TLX0_TELCI) HSP 1 Score: 85.9 bits (211), Expect = 1.400e-18 Identity = 45/115 (39.13%), Postives = 65/115 (56.52%), Query Frame = 1
Query: 1 WHPNGQIVATAGCDYRVRVFSAYLPEADGEVPDSGPFGEAAEFGTLLAEFDQPKTWVHDVVWAPSGNHLAFVTQASEVYVADFTEAATSGPALQEVRHTGLPHRTCEFLSDKALI 345
WHPN ++A CD+R RVFSA++ E D E P P+G FG L+AEF Q WVH V ++PSG LAFV S + D + T L R + LP + E++++ +++
Sbjct: 36 WHPNNVLLAVGACDFRARVFSAWVKEVD-EKPSPNPWGSKMPFGQLMAEF-QISGWVHHVSFSPSGCRLAFVAHDSSISYVDANQDNTVAHTL---RTSCLPFTSAEWVTENSIV 145
BLAST of mRNA_M-pyrifera_M_contig121020.4328.1 vs. uniprot
Match: A0A4D9EN01_9SAUR (Actin-related protein 2/3 complex subunit n=3 Tax=Archelosauria TaxID=1329799 RepID=A0A4D9EN01_9SAUR) HSP 1 Score: 89.0 bits (219), Expect = 1.410e-18 Identity = 46/117 (39.32%), Postives = 70/117 (59.83%), Query Frame = 1
Query: 1 WHPNGQIVATAGCDYRVRVFSAYLPEADGEVPDSGPFGEAAEFGTLLAEFDQPKT--WVHDVVWAPSGNHLAFVTQASEVYVADFTEAATSGPALQEVRHTGLPHRTCEFLSDKALI 345
WHPN ++A CD++ RVFSAY+ E D E P S P+G FG L++EF P + WVH V ++ SGN LA+V+ S V VAD A+ + +++ LP + F+S+ +++
Sbjct: 150 WHPNNVLLAAGSCDFKCRVFSAYIKEVD-EKPASTPWGSKMPFGQLMSEFGGPGSGGWVHSVSFSASGNRLAWVSHDSTVSVAD----ASKNMMVSQLKTEYLPFLSVSFVSENSVV 261
BLAST of mRNA_M-pyrifera_M_contig121020.4328.1 vs. uniprot
Match: A0A183GSZ0_HELPZ (Actin-related protein 2/3 complex subunit n=1 Tax=Heligmosomoides polygyrus TaxID=6339 RepID=A0A183GSZ0_HELPZ) HSP 1 Score: 89.0 bits (219), Expect = 1.450e-18 Identity = 44/115 (38.26%), Postives = 65/115 (56.52%), Query Frame = 1
Query: 1 WHPNGQIVATAGCDYRVRVFSAYLPEADGEVPDSGPFGEAAEFGTLLAEFDQPKTWVHDVVWAPSGNHLAFVTQASEVYVADFTEAATSGPALQEVRHTGLPHRTCEFLSDKALI 345
WHPN ++A CD+R RVFSA++ E D E P P+G FG L+AEF Q WVH V ++PSG LAFV S + + +A +R + LP + E++++ +L+
Sbjct: 168 WHPNNVLLAVGACDFRARVFSAWVKEVD-EKPSPNPWGSKMPFGQLMAEF-QVSGWVHHVTFSPSGCRLAFVAHDSSI---SYVDANQDNTVTHTLRTSSLPFTSAEWVTENSLV 277
BLAST of mRNA_M-pyrifera_M_contig121020.4328.1 vs. uniprot
Match: A0A2P4VA15_CAERE (Uncharacterized protein n=2 Tax=Caenorhabditis remanei TaxID=31234 RepID=A0A2P4VA15_CAERE) HSP 1 Score: 88.2 bits (217), Expect = 5.430e-18 Identity = 43/115 (37.39%), Postives = 67/115 (58.26%), Query Frame = 1
Query: 1 WHPNGQIVATAGCDYRVRVFSAYLPEADGEVPDSGPFGEAAEFGTLLAEFDQPKTWVHDVVWAPSGNHLAFVTQASEVYVADFTEAATSGPALQEVRHTGLPHRTCEFLSDKALI 345
WHPN ++A CD++ RVFSAY+ E D E P P+G+ FG L++E+ WVH V ++PSG LAFV+ S V F ++ +Q +R LP T E++++ +++
Sbjct: 157 WHPNNVLLAVGSCDFKCRVFSAYVKEVD-EKPSPNPWGQKMPFGQLMSEYSVGG-WVHRVAFSPSGCRLAFVSHDSSV---SFVDSTVDSQKVQNLRTIHLPFTTVEWITENSVV 266
BLAST of mRNA_M-pyrifera_M_contig121020.4328.1 vs. uniprot
Match: AR1AB_XENLA (Actin-related protein 2/3 complex subunit 1A-B n=396 Tax=Gnathostomata TaxID=7776 RepID=AR1AB_XENLA) HSP 1 Score: 87.0 bits (214), Expect = 7.010e-18 Identity = 47/117 (40.17%), Postives = 70/117 (59.83%), Query Frame = 1
Query: 1 WHPNGQIVATAGCDYRVRVFSAYLPEADGEVPDSGPFGEAAEFGTLLAEFDQPKT--WVHDVVWAPSGNHLAFVTQASEVYVADFTEAATSGPALQEVRHTGLPHRTCEFLSDKALI 345
WHPN ++A CD++ RVFSAY+ E D E P S P+G FG ++AEF + WVH V ++ SGN LA+V+ S V VAD A+ ++ +++ LP + F+S+ +LI
Sbjct: 150 WHPNNVLLAAGSCDFKTRVFSAYIKEVD-EKPASTPWGSKMPFGQMMAEFGGVSSGGWVHSVSFSASGNKLAWVSHDSTVSVAD----ASKNMSVSQLKTEFLPLLSVIFVSENSLI 261
BLAST of mRNA_M-pyrifera_M_contig121020.4328.1 vs. uniprot
Match: AR1AA_XENLA (Actin-related protein 2/3 complex subunit 1A-A n=8 Tax=Anura TaxID=8342 RepID=AR1AA_XENLA) HSP 1 Score: 87.0 bits (214), Expect = 7.010e-18 Identity = 47/117 (40.17%), Postives = 70/117 (59.83%), Query Frame = 1
Query: 1 WHPNGQIVATAGCDYRVRVFSAYLPEADGEVPDSGPFGEAAEFGTLLAEFDQPKT--WVHDVVWAPSGNHLAFVTQASEVYVADFTEAATSGPALQEVRHTGLPHRTCEFLSDKALI 345
WHPN ++A CD++ RVFSAY+ E D E P S P+G FG ++AEF + WVH V ++ SGN LA+V+ S V VAD A+ ++ +++ LP + F+S+ +LI
Sbjct: 150 WHPNNVLLAAGSCDFKTRVFSAYIKEVD-EKPASTPWGSKMPFGQMMAEFGGVSSGGWVHSVSFSASGNKLAWVSHDSTVSVAD----ASKNMSVSQLKTEFLPLLSVIFVSENSLI 261
BLAST of mRNA_M-pyrifera_M_contig121020.4328.1 vs. uniprot
Match: A0A7L0NCL5_9PASS (ARC1A protein (Fragment) n=3 Tax=Tetrapoda TaxID=32523 RepID=A0A7L0NCL5_9PASS) HSP 1 Score: 85.1 bits (209), Expect = 7.690e-18 Identity = 45/117 (38.46%), Postives = 69/117 (58.97%), Query Frame = 1
Query: 1 WHPNGQIVATAGCDYRVRVFSAYLPEADGEVPDSGPFGEAAEFGTLLAEFDQPKT--WVHDVVWAPSGNHLAFVTQASEVYVADFTEAATSGPALQEVRHTGLPHRTCEFLSDKALI 345
WHPN ++A CD++ RVFSAY+ E D E P S P+G FG L++EF + WVH V ++ SGN LA+V+ S V VAD A+ + +++ LP + F+S+ +++
Sbjct: 23 WHPNNVLLAAGSCDFKCRVFSAYIKEVD-EKPASTPWGSKMPFGQLMSEFGGAGSGGWVHSVSFSASGNRLAWVSHDSTVSVAD----ASKNMMVSQLKTEFLPLLSVSFVSENSVV 134 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121020.4328.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig121020.4328.1 >prot_M-pyrifera_M_contig121020.4328.1 ID=prot_M-pyrifera_M_contig121020.4328.1|Name=mRNA_M-pyrifera_M_contig121020.4328.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=115bp WHPNGQIVATAGCDYRVRVFSAYLPEADGEVPDSGPFGEAAEFGTLLAEFback to top mRNA from alignment at M-pyrifera_M_contig121020:5..349- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig121020.4328.1 ID=mRNA_M-pyrifera_M_contig121020.4328.1|Name=mRNA_M-pyrifera_M_contig121020.4328.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=345bp|location=Sequence derived from alignment at M-pyrifera_M_contig121020:5..349- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig121020:5..349- >mRNA_M-pyrifera_M_contig121020.4328.1 ID=mRNA_M-pyrifera_M_contig121020.4328.1|Name=mRNA_M-pyrifera_M_contig121020.4328.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=690bp|location=Sequence derived from alignment at M-pyrifera_M_contig121020:5..349- (Macrocystis pyrifera P11B4 male)back to top |