mRNA_M-pyrifera_M_contig12102.4327.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig12102.4327.1 vs. uniprot
Match: D7G038_ECTSI (Integral membrane protein-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G038_ECTSI) HSP 1 Score: 217 bits (553), Expect = 3.540e-69 Identity = 102/131 (77.86%), Postives = 115/131 (87.79%), Query Frame = 1
Query: 1 RTLRMGITGAFVLTPMSLAWNMFAERLAPGTSWRAILTKMGVSIAVLPPMLASQFTSLTLLEEGKTMDDVRRKLSHDFVPTLKNGLCYWPLVGVLNSAFVPVLSRPAMSSFAGVFWNVYISYQANHNGMDV 393
RT+RMGITGAF +TP S AWNM+AERLAPG S RA++TK+GVS+AVLPPMLA+QF SLTLLEEGKTM DVR KLS DF PTLKN + +WP+V V+NSAFVPVLSRP SSF GVFWNVYISYQANHNGM+V
Sbjct: 16 RTMRMGITGAFFVTPASFAWNMYAERLAPGRSLRAVVTKLGVSVAVLPPMLAAQFASLTLLEEGKTMGDVRTKLSRDFTPTLKNAILFWPVVSVINSAFVPVLSRPVFSSFVGVFWNVYISYQANHNGMEV 146
BLAST of mRNA_M-pyrifera_M_contig12102.4327.1 vs. uniprot
Match: A0A6H5JW72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW72_9PHAE) HSP 1 Score: 216 bits (550), Expect = 2.870e-68 Identity = 101/131 (77.10%), Postives = 114/131 (87.02%), Query Frame = 1
Query: 1 RTLRMGITGAFVLTPMSLAWNMFAERLAPGTSWRAILTKMGVSIAVLPPMLASQFTSLTLLEEGKTMDDVRRKLSHDFVPTLKNGLCYWPLVGVLNSAFVPVLSRPAMSSFAGVFWNVYISYQANHNGMDV 393
RT+RMGITGAF +TP S AWNM+AERLAPG S RA++TK+GVS+AVLPPMLA+QF SLTLLEEGKTM DVR KLS DF PTLKN + +WP+V V+NS FVPVLSRP SSF GVFWNVYISYQANHNGM+V
Sbjct: 60 RTMRMGITGAFFVTPASFAWNMYAERLAPGRSLRAVMTKLGVSVAVLPPMLAAQFASLTLLEEGKTMGDVRTKLSRDFTPTLKNAILFWPVVSVINSTFVPVLSRPVFSSFVGVFWNVYISYQANHNGMEV 190
BLAST of mRNA_M-pyrifera_M_contig12102.4327.1 vs. uniprot
Match: A0A835ZBN1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBN1_9STRA) HSP 1 Score: 144 bits (363), Expect = 9.720e-40 Identity = 68/131 (51.91%), Postives = 92/131 (70.23%), Query Frame = 1
Query: 1 RTLRMGITGAFVLTPMSLAWNMFAERLAPGTSWRAILTKMGVSIAVLPPMLASQFTSLTLLEEGKTMDDVRRKLSHDFVPTLKNGLCYWPLVGVLNSAFVPVLSRPAMSSFAGVFWNVYISYQANHNGMDV 393
RT R+ TG FVLTP+S+ WN AERL PG +A+L K+ V + +PPM++ QF S+TL+E GK D V RK+ D + T G CYWP VG+LNS FVPV +RP + SFAG+FWN+Y+S++AN + + V
Sbjct: 56 RTARIAGTGIFVLTPLSIGWNHAAERLFPGRHVKAMLGKLAVQLLCMPPMISIQFASMTLME-GKGWDAVDRKIRQDLLETTAAGACYWPFVGLLNSRFVPVTNRPVVGSFAGLFWNIYLSHKANESDLVV 185
BLAST of mRNA_M-pyrifera_M_contig12102.4327.1 vs. uniprot
Match: UPI002009C647 (PXMP2/4 family protein 4-like n=1 Tax=Salvia hispanica TaxID=49212 RepID=UPI002009C647) HSP 1 Score: 86.7 bits (213), Expect = 3.820e-19 Identity = 43/125 (34.40%), Postives = 64/125 (51.20%), Query Frame = 1
Query: 1 RTLRMGITGAFVLTPMSLAWNMFAERLAPGTSWRAILTKMGVSIAVLPPMLASQFTSLTLLEEGKTMDDVRRKLSHDFVPTLKNGLCYWPLVGVLNSAFVPVLSRPAMSSFAGVFWNVYISYQAN 375
RTLR+ G F+L P W F R+ P + L KM + + P++ F S +G+ D++ +L D +PTL NGL YWPL L VPV +P M+S W++Y++Y A+
Sbjct: 11 RTLRISGFGLFMLGPSQHYWFNFVARVLPNRDLISTLKKMAMGQLLYSPVINGIFFSYNAAAQGENGDEIAARLKRDLIPTLLNGLMYWPLCDFLTYRVVPVHLQPLMNSSCAFLWSIYLTYMAS 135
BLAST of mRNA_M-pyrifera_M_contig12102.4327.1 vs. uniprot
Match: A0A1Q3D8L9_CEPFO (Mpv17_PMP22 domain-containing protein n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3D8L9_CEPFO) HSP 1 Score: 88.6 bits (218), Expect = 6.380e-19 Identity = 43/131 (32.82%), Postives = 66/131 (50.38%), Query Frame = 1
Query: 1 RTLRMGITGAFVLTPMSLAWNMFAERLAPGTSWRAILTKMGVSIAVLPPMLASQFTSLTLLEEGKTMDDVRRKLSHDFVPTLKNGLCYWPLVGVLNSAFVPVLSRPAMSSFAGVFWNVYISYQANHNGMDV 393
RT RM G F+L W F + P A L K+ + A+ P + + F S +G+ D++ +L D +PTLKNG+CYWP+ + FVPV +P S+ W +Y+SY A+ N + +
Sbjct: 112 RTSRMAAYGLFILGFAQHKWFTFISKALPKRDVLATLKKLVMGQAIYGPCMTTVFFSFNAALQGENSDEIVARLKRDMLPTLKNGICYWPICDFVVFKFVPVQLQPLASNSCAFLWTIYLSYMASLNKVSI 242
BLAST of mRNA_M-pyrifera_M_contig12102.4327.1 vs. uniprot
Match: A0A2R5FZK7_9STRA (DNA-3-methyladenine glycosylase 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5FZK7_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 8.530e-19 Identity = 48/123 (39.02%), Postives = 70/123 (56.91%), Query Frame = 1
Query: 25 GAFVLTPMSLAWNMFAERLAPGTSWRAILTK-MGVSIAVLPPMLASQFTSLTLLEEG-----KTMDDVRRKLSHDFVPTLKNGLCYWPLVGVLNSAFVPVLSRPAMSSFAGVFWNVYISYQAN 375
G F+ P+S ++ MF ER+ PGTS I+ K + S L FT++TLL+ G ++++D RRK++ D VPT G YWP+ +L +VP L R SS GV WN+Y++ AN
Sbjct: 80 GTFITGPVSFSFQMFLERMVPGTSGAQIVKKTLCNSTFAFCVSLPIMFTAVTLLQPGPNGERRSLEDARRKIAGDLVPTFMAGSLYWPVFNMLVYRYVPTLHRAVASSLIGVVWNIYLAMVAN 202
BLAST of mRNA_M-pyrifera_M_contig12102.4327.1 vs. uniprot
Match: S8DXK5_9LAMI (Uncharacterized protein (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8DXK5_9LAMI) HSP 1 Score: 87.0 bits (214), Expect = 9.750e-19 Identity = 39/125 (31.20%), Postives = 67/125 (53.60%), Query Frame = 1
Query: 1 RTLRMGITGAFVLTPMSLAWNMFAERLAPGTSWRAILTKMGVSIAVLPPMLASQFTSLTLLEEGKTMDDVRRKLSHDFVPTLKNGLCYWPLVGVLNSAFVPVLSRPAMSSFAGVFWNVYISYQAN 375
RT+RM + G +L P W FA RL P + L K+G+ + P + + F S +G++ +++ +L D +PTL+NG+ YWPL + +PV +P ++S W +Y++Y A+
Sbjct: 68 RTMRMSVFGLIILGPSQHFWFNFAGRLFPNRDVVSTLKKLGMGQLMFAPAINTSFFSFNAALQGESRNEIVARLKRDLIPTLRNGILYWPLCDFVTYKAIPVHLQPLLNSSFSYLWTIYLTYMAS 192
BLAST of mRNA_M-pyrifera_M_contig12102.4327.1 vs. uniprot
Match: UPI001FB1286A (PXMP2/4 family protein 4-like n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB1286A) HSP 1 Score: 87.8 bits (216), Expect = 1.580e-18 Identity = 43/125 (34.40%), Postives = 68/125 (54.40%), Query Frame = 1
Query: 1 RTLRMGITGAFVLTPMSLAWNMFAERLAPGTSWRAILTKMGVSIAVLPPMLASQFTSLTLLEEGKTMDDVRRKLSHDFVPTLKNGLCYWPLVGVLNSAFVPVLSRPAMSSFAGVFWNVYISYQAN 375
RTLRMG+ G F+ W F R+ P + A L KM + AV P++ + F S +G++ ++ +L D +PTL NG+ YWPL L F+PV +P +S+ W++Y++Y A+
Sbjct: 121 RTLRMGMYGLFISGSTLHYWYNFMSRILPKRNTMASLKKMFLGQAVYGPIMTAVFFSTNAALQGESYGEIVARLKRDMIPTLLNGVMYWPLCDFLTFKFIPVHLQPLVSNSFSYLWSIYLTYMAS 245
BLAST of mRNA_M-pyrifera_M_contig12102.4327.1 vs. uniprot
Match: A0A813WUK2_9BILA (Hypothetical protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A813WUK2_9BILA) HSP 1 Score: 87.4 bits (215), Expect = 2.030e-18 Identity = 46/125 (36.80%), Postives = 69/125 (55.20%), Query Frame = 1
Query: 1 RTLRMGITGAFVLTPMSLAWNMFAERLAPGTSWRAILTKMGVSIAVLPPMLASQFTSLTLLEEGKTMDDVRRKLSHDFVPTLKNGLCYWPLVGVLNSAFVPVLSRPAMSSFAGVFWNVYISYQAN 375
RTL M + V TP S ERL PG I KM + + P ++ FTS+ LL+ G++ ++++ K+ H T G CYWP V +N ++P+ RP + +FAG+FWN+Y+S AN
Sbjct: 70 RTLIMCTSAVLVSTPYSFTLARTVERLFPGKQGIQIAKKMLTNTLMGPVGISLAFTSIGLLK-GQSFEEIKLKIVHHMPQTFLLGNCYWPFVSFINFRYIPLNYRPFLGTFAGMFWNIYVSTIAN 193
BLAST of mRNA_M-pyrifera_M_contig12102.4327.1 vs. uniprot
Match: UPI0019019F33 (protein SYM1-like n=1 Tax=Benincasa hispida TaxID=102211 RepID=UPI0019019F33) HSP 1 Score: 86.3 bits (212), Expect = 5.670e-18 Identity = 42/131 (32.06%), Postives = 67/131 (51.15%), Query Frame = 1
Query: 1 RTLRMGITGAFVLTPMSLAWNMFAERLAPGTSWRAILTKMGVSIAVLPPMLASQFTSLTLLEEGKTMDDVRRKLSHDFVPTLKNGLCYWPLVGVLNSAFVPVLSRPAMSSFAGVFWNVYISYQANHNGMDV 393
RT RM G +L P W F R++P + K+ + AV P + S F S +G++ ++ +L+ D +PTL NGL +WP+ L FVPV +P +S W +Y++Y A+ G+D+
Sbjct: 121 RTTRMAAYGLLILGPSQHLWFNFMSRISPSRDLLSTFKKIFLGQAVFGPTITSIFFSYNASLQGESGSEIAARLNRDLLPTLLNGLLFWPVCDFLTYKFVPVHLQPLTNSSFAYIWTIYLTYMASLKGVDI 251 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12102.4327.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig12102.4327.1 >prot_M-pyrifera_M_contig12102.4327.1 ID=prot_M-pyrifera_M_contig12102.4327.1|Name=mRNA_M-pyrifera_M_contig12102.4327.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=127bp MGITGAFVLTPMSLAWNMFAERLAPGTSWRAILTKMGVSIAVLPPMLASQback to top mRNA from alignment at M-pyrifera_M_contig12102:7536..8778- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig12102.4327.1 ID=mRNA_M-pyrifera_M_contig12102.4327.1|Name=mRNA_M-pyrifera_M_contig12102.4327.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1243bp|location=Sequence derived from alignment at M-pyrifera_M_contig12102:7536..8778- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig12102:7536..8778- >mRNA_M-pyrifera_M_contig12102.4327.1 ID=mRNA_M-pyrifera_M_contig12102.4327.1|Name=mRNA_M-pyrifera_M_contig12102.4327.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=762bp|location=Sequence derived from alignment at M-pyrifera_M_contig12102:7536..8778- (Macrocystis pyrifera P11B4 male)back to top |