mRNA_M-pyrifera_M_contig121017.4324.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121017.4324.1
Unique NamemRNA_M-pyrifera_M_contig121017.4324.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig121017.4324.1 vs. uniprot
Match: A0A7S0JIT8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JIT8_9EUKA)

HSP 1 Score: 92.8 bits (229), Expect = 3.140e-19
Identity = 42/138 (30.43%), Postives = 78/138 (56.52%), Query Frame = 1 
Query:   13 VIAWAERTHVVEELFGEHLHSEVAVRSEPLLLFLCTREALREEHVLALWRAAAGTHESVARTLFALLLRIVPHMATRLRDAVGDLLRTLPLGRFDARVLELVKDFAIHALRRDIRDASSPEAEPNWYSVDILWYLIQD 426
            +IAW +R HVVE +FGE LH ++  R   +L FL    AL    +  +WR++   HESV + ++ +L+ +  H+  +L D +  L++++P   +    + L++ FAI A++  +    +P     WY ++ LW ++Q+
Sbjct:  248 LIAWLQREHVVELIFGEGLHDQIVRRCVEVLCFLAMHNALDARLLALIWRSSHDKHESVKQAIYLVLIDLTGHLPLQLLDELYALIKSVPFSEYSTHTVSLLRGFAISAIQSPL----NPARGKRWYGINELWEMMQE 381
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BLAST of mRNA_M-pyrifera_M_contig121017.4324.1 vs. uniprot
Match: A0A7R9U6L2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U6L2_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 2.280e-5
Identity = 37/130 (28.46%), Postives = 65/130 (50.00%), Query Frame = 1 
Query:   40 VVEELFGEHLHSEVAVRSEPLLLFLCTREALREEHVLALWRAAAGTHESVARTLFALLLRIVPHMATRLRDAVGDLLRTLPLGRFDARVLELVKDFAIHALRRDIRDASSPEAEPNWYSVDILWYLIQDG 429
            V++EL     H E+  RS  +LLFL ++  L    +  LW+AA     S  R++FA+L+ ++P +     D V + +R L         ++LV++F   +L R IR+  +       + +D+LW  +  G
Sbjct:  342 VLKELKVADTHIELMKRSTDMLLFLASQGKLSSTVLDTLWKAAE--QPSQQRSVFAILVSVMPRLTAEQLDDVDEKVRALLPSELQDVHIDLVREFTEASLGR-IRERQTLS-----FGLDLLWQTLHGG 463
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121017.4324.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S0JIT8_9EUKA3.140e-1930.43Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
A0A7R9U6L2_9STRA2.280e-528.46Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121017contigM-pyrifera_M_contig121017:15..443 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score82.4
Seed ortholog evalue1.9e-13
Seed eggNOG ortholog192875.XP_004363911.1
Preferred nameUSP34
KEGG koko:K11840,ko:K11853
Hectar predicted targeting categoryother localisation
GOsGO:0001558,GO:0002682,GO:0002683,GO:0002697,GO:0002700,GO:0002759,GO:0002784,GO:0002831,GO:0002832,GO:0002920,GO:0003674,GO:0003824,GO:0004175,GO:0004197,GO:0004843,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006807,GO:0007154,GO:0007165,GO:0007166,GO:0007267,GO:0007275,GO:0007444,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0008592,GO:0009888,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010468,GO:0010646,GO:0010647,GO:0010648,GO:0016055,GO:0016579,GO:0016787,GO:0019222,GO:0019538,GO:0019783,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030111,GO:0030177,GO:0030307,GO:0031347,GO:0031348,GO:0031647,GO:0032101,GO:0032102,GO:0032501,GO:0032502,GO:0035220,GO:0035295,GO:0036211,GO:0036459,GO:0040008,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043687,GO:0043900,GO:0043901,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045088,GO:0045751,GO:0045824,GO:0045927,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048731,GO:0048856,GO:0050776,GO:0050777,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051716,GO:0060255,GO:0060429,GO:0060828,GO:0060968,GO:0065007,GO:0065008,GO:0070011,GO:0070646,GO:0070647,GO:0071108,GO:0071704,GO:0080134,GO:0090263,GO:0101005,GO:0140096,GO:0198738,GO:1900424,GO:1900425,GO:1901564,GO:1905114
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGs38D00@33154,COG5077@1,KOG1866@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Exons1
Model size429
Cds size429
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815729.392079-CDS-M-pyrifera_M_contig121017:14..4431622815729.392079-CDS-M-pyrifera_M_contig121017:14..443Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121017 15..443 -
1692277541.9814553-CDS-M-pyrifera_M_contig121017:14..4431692277541.9814553-CDS-M-pyrifera_M_contig121017:14..443Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121017 15..443 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121017.4324.1prot_M-pyrifera_M_contig121017.4324.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121017 15..443 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121017.4324.1

>prot_M-pyrifera_M_contig121017.4324.1 ID=prot_M-pyrifera_M_contig121017.4324.1|Name=mRNA_M-pyrifera_M_contig121017.4324.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=143bp
SPSDVIAWAERTHVVEELFGEHLHSEVAVRSEPLLLFLCTREALREEHVL
ALWRAAAGTHESVARTLFALLLRIVPHMATRLRDAVGDLLRTLPLGRFDA
RVLELVKDFAIHALRRDIRDASSPEAEPNWYSVDILWYLIQDG
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mRNA from alignment at M-pyrifera_M_contig121017:15..443-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121017.4324.1 ID=mRNA_M-pyrifera_M_contig121017.4324.1|Name=mRNA_M-pyrifera_M_contig121017.4324.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=429bp|location=Sequence derived from alignment at M-pyrifera_M_contig121017:15..443- (Macrocystis pyrifera P11B4 male)
TCACCAAGTGATGTGATTGCCTGGGCGGAGCGAACTCACGTGGTTGAAGA
ATTGTTCGGAGAACACCTGCATAGTGAAGTTGCAGTGCGATCAGAGCCAC
TCTTGTTATTTCTCTGCACTAGAGAAGCCTTGCGTGAGGAACACGTGTTG
GCATTGTGGAGAGCTGCAGCTGGAACACATGAAAGTGTTGCTCGAACCTT
GTTTGCGTTGTTGCTGCGAATTGTACCACACATGGCGACTAGATTGCGTG
ACGCAGTTGGTGATTTGCTGCGTACTTTGCCTCTTGGTAGATTTGATGCA
AGAGTTTTGGAACTCGTCAAAGATTTTGCAATCCATGCGTTGCGTCGTGA
TATTCGTGATGCATCCTCCCCTGAAGCTGAACCGAATTGGTATAGCGTGG
ATATTCTTTGGTATTTAATTCAGGATGGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121017:15..443-

>mRNA_M-pyrifera_M_contig121017.4324.1 ID=mRNA_M-pyrifera_M_contig121017.4324.1|Name=mRNA_M-pyrifera_M_contig121017.4324.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=858bp|location=Sequence derived from alignment at M-pyrifera_M_contig121017:15..443- (Macrocystis pyrifera P11B4 male)
TCACCAAGTGATGTGATTGCCTGGGCGGAGCGAACTCACGTGGTTGAAGA
ATTGTTCGGAGAACACCTGCATAGTGAAGTTGCAGTGCGATCAGAGCCAC
TCTTGTTATTTCTCTGCACTAGAGAAGCCTTGCGTGAGGAACACGTGTTG
GCATTGTGGAGAGCTGCAGCTGGAACACATGAAAGTGTTGCTCGAACCTT
GTTTGCGTTGTTGCTGCGAATTGTACCACACATGGCGACTAGATTGCGTG
ACGCAGTTGGTGATTTGCTGCGTACTTTGCCTCTTGGTAGATTTGATGCA
AGAGTTTTGGAACTCGTCAAAGATTTTGCAATCCATGCGTTGCGTCGTGA
TATTCGTGATGCATCCTCCCCTGAAGCTGAACCGAATTGGTATAGCGTGG
ATATTCTTTGGTATTTAATTCAGGATGGATCACCAAGTGATGTGATTGCC
TGGGCGGAGCGAACTCACGTGGTTGAAGAATTGTTCGGAGAACACCTGCA
TAGTGAAGTTGCAGTGCGATCAGAGCCACTCTTGTTATTTCTCTGCACTA
GAGAAGCCTTGCGTGAGGAACACGTGTTGGCATTGTGGAGAGCTGCAGCT
GGAACACATGAAAGTGTTGCTCGAACCTTGTTTGCGTTGTTGCTGCGAAT
TGTACCACACATGGCGACTAGATTGCGTGACGCAGTTGGTGATTTGCTGC
GTACTTTGCCTCTTGGTAGATTTGATGCAAGAGTTTTGGAACTCGTCAAA
GATTTTGCAATCCATGCGTTGCGTCGTGATATTCGTGATGCATCCTCCCC
TGAAGCTGAACCGAATTGGTATAGCGTGGATATTCTTTGGTATTTAATTC
AGGATGGA
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