mRNA_M-pyrifera_M_contig121000.4319.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121000.4319.1
Unique NamemRNA_M-pyrifera_M_contig121000.4319.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig121000.4319.1 vs. uniprot
Match: A0A832CJ08_9BACT (Glyco_hydro_42M domain-containing protein n=1 Tax=Planctomycetales bacterium TaxID=2053591 RepID=A0A832CJ08_9BACT)

HSP 1 Score: 77.4 bits (189), Expect = 1.540e-13
Identity = 55/163 (33.74%), Postives = 79/163 (48.47%), Query Frame = 1 
Query:    4 WSWSATENWVWERANFSLPTSSSPLEVILR-ANQTE--APIEVDAVMVSSNFTDFSMRLSQEQQLPLDGVMDQNGEVFARGSIATGSAPVSLSFPYTAYHSSYSTQHLICVPINASCRWSGDHVYSSFVPVEIDVTQGGVFSEWVNVGGMLGSFNDMQWLITA 483
            W W A EN VWE  + ++  ++    +IL  A+Q E  A   VD V+++ NF D   R+ +E  LPLDG++ Q G+V+ R       A  +L+ P    HS Y   HL         RW          P  +    G   +EW+ VG +L S ND QW++TA
Sbjct:  181 WEWGAVENIVWEGHDAAVELAAGRARLILETADQPEPAARRNVDLVLLTPNFDDVQQRIEREPYLPLDGLLTQEGDVYLRLVNHPDGAECTLTLPPCTEHSPYWV-HLR--------RWQ---------PKTLTAAPGST-TEWLEVGSLLDSLNDGQWILTA 324
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BLAST of mRNA_M-pyrifera_M_contig121000.4319.1 vs. uniprot
Match: A0A847GSF2_9BACT (Glyco_hydro_42M domain-containing protein n=1 Tax=Candidatus Anammoximicrobium sp. TaxID=2699742 RepID=A0A847GSF2_9BACT)

HSP 1 Score: 62.8 bits (151), Expect = 1.850e-8
Identity = 48/164 (29.27%), Postives = 73/164 (44.51%), Query Frame = 1 
Query:    1 SWSWSATENWVWERANFSLPTSSSPLEVILRANQTEAPI---EVDAVMVSSNFTDFSMRLSQEQQLPLDGVMDQNGEVFARGSIATGSAPVSLSFPYTAYHSSYSTQHLICVPINASCRWSGDHVYSSFVPVEIDVTQGGVFSEWVNVGGMLGSFNDMQWLITA 483
            +WSW A EN VWE  + +        ++ L A    AP     VD VM++ +      R+ +E  LPLDG++ Q G+V+AR       + + L+ P    HS Y   HL                  ++ PV +   + G   +W  VG +L + ND QW + A
Sbjct:  159 AWSWGAVENVVWEGHDAAADLDRGLAKITLVAGPQPAPQARRHVDLVMLTRDEAQVRQRIEKENYLPLDGMLTQAGDVWARLINQPDGSAMRLTLPNGTEHSPYWV-HL-----------------RTWKPV-VMTAEPGQTVDWTEVGSLLDTLNDGQWNLKA 303
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121000.4319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A832CJ08_9BACT1.540e-1333.74Glyco_hydro_42M domain-containing protein n=1 Tax=... [more]
A0A847GSF2_9BACT1.850e-829.27Glyco_hydro_42M domain-containing protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121000contigM-pyrifera_M_contig121000:4..486 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size483
Cds size483
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815729.2050388-CDS-M-pyrifera_M_contig121000:3..4861622815729.2050388-CDS-M-pyrifera_M_contig121000:3..486Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121000 4..486 +
1692277541.9256344-CDS-M-pyrifera_M_contig121000:3..4861692277541.9256344-CDS-M-pyrifera_M_contig121000:3..486Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121000 4..486 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121000.4319.1prot_M-pyrifera_M_contig121000.4319.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121000 4..486 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121000.4319.1

>prot_M-pyrifera_M_contig121000.4319.1 ID=prot_M-pyrifera_M_contig121000.4319.1|Name=mRNA_M-pyrifera_M_contig121000.4319.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=161bp
SWSWSATENWVWERANFSLPTSSSPLEVILRANQTEAPIEVDAVMVSSNF
TDFSMRLSQEQQLPLDGVMDQNGEVFARGSIATGSAPVSLSFPYTAYHSS
YSTQHLICVPINASCRWSGDHVYSSFVPVEIDVTQGGVFSEWVNVGGMLG
SFNDMQWLITA
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mRNA from alignment at M-pyrifera_M_contig121000:4..486+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121000.4319.1 ID=mRNA_M-pyrifera_M_contig121000.4319.1|Name=mRNA_M-pyrifera_M_contig121000.4319.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=483bp|location=Sequence derived from alignment at M-pyrifera_M_contig121000:4..486+ (Macrocystis pyrifera P11B4 male)
AGTTGGTCGTGGAGTGCTACGGAAAATTGGGTGTGGGAGAGGGCAAACTT
TTCTCTTCCCACCTCTTCTTCACCACTTGAAGTCATTTTGAGGGCAAATC
AAACGGAAGCGCCGATTGAAGTCGATGCAGTGATGGTGAGTTCAAATTTT
ACTGATTTTTCCATGCGACTGTCACAAGAACAGCAATTACCCTTGGATGG
TGTGATGGACCAGAATGGAGAGGTTTTTGCGAGAGGTAGCATTGCGACAG
GATCAGCCCCTGTGTCTCTTTCCTTCCCATACACAGCATACCACTCTTCC
TACTCCACGCAGCACTTGATTTGTGTTCCAATCAATGCGTCATGTCGTTG
GAGTGGTGATCATGTGTACTCTTCGTTTGTGCCTGTGGAAATTGATGTGA
CGCAAGGAGGGGTGTTTTCAGAATGGGTCAACGTTGGAGGCATGCTTGGG
TCATTCAACGACATGCAATGGCTCATCACAGCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121000:4..486+

>mRNA_M-pyrifera_M_contig121000.4319.1 ID=mRNA_M-pyrifera_M_contig121000.4319.1|Name=mRNA_M-pyrifera_M_contig121000.4319.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=966bp|location=Sequence derived from alignment at M-pyrifera_M_contig121000:4..486+ (Macrocystis pyrifera P11B4 male)
AGTTGGTCGTGGAGTGCTACGGAAAATTGGGTGTGGGAGAGGGCAAACTT
TTCTCTTCCCACCTCTTCTTCACCACTTGAAGTCATTTTGAGGGCAAATC
AAACGGAAGCGCCGATTGAAGTCGATGCAGTGATGGTGAGTTCAAATTTT
ACTGATTTTTCCATGCGACTGTCACAAGAACAGCAATTACCCTTGGATGG
TGTGATGGACCAGAATGGAGAGGTTTTTGCGAGAGGTAGCATTGCGACAG
GATCAGCCCCTGTGTCTCTTTCCTTCCCATACACAGCATACCACTCTTCC
TACTCCACGCAGCACTTGATTTGTGTTCCAATCAATGCGTCATGTCGTTG
GAGTGGTGATCATGTGTACTCTTCGTTTGTGCCTGTGGAAATTGATGTGA
CGCAAGGAGGGGTGTTTTCAGAATGGGTCAACGTTGGAGGCATGCTTGGG
TCATTCAACGACATGCAATGGCTCATCACAGCAAGTTGGTCGTGGAGTGC
TACGGAAAATTGGGTGTGGGAGAGGGCAAACTTTTCTCTTCCCACCTCTT
CTTCACCACTTGAAGTCATTTTGAGGGCAAATCAAACGGAAGCGCCGATT
GAAGTCGATGCAGTGATGGTGAGTTCAAATTTTACTGATTTTTCCATGCG
ACTGTCACAAGAACAGCAATTACCCTTGGATGGTGTGATGGACCAGAATG
GAGAGGTTTTTGCGAGAGGTAGCATTGCGACAGGATCAGCCCCTGTGTCT
CTTTCCTTCCCATACACAGCATACCACTCTTCCTACTCCACGCAGCACTT
GATTTGTGTTCCAATCAATGCGTCATGTCGTTGGAGTGGTGATCATGTGT
ACTCTTCGTTTGTGCCTGTGGAAATTGATGTGACGCAAGGAGGGGTGTTT
TCAGAATGGGTCAACGTTGGAGGCATGCTTGGGTCATTCAACGACATGCA
ATGGCTCATCACAGCA
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