mRNA_M-pyrifera_M_contig120984.4314.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120984.4314.1
Unique NamemRNA_M-pyrifera_M_contig120984.4314.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig120984.4314.1 vs. uniprot
Match: M1EBP4_MUSPF (Ankyrin repeat and KH domain containing 1 (Fragment) n=1 Tax=Mustela putorius furo TaxID=9669 RepID=M1EBP4_MUSPF)

HSP 1 Score: 57.4 bits (137), Expect = 4.970e-7
Identity = 38/102 (37.25%), Postives = 55/102 (53.92%), Query Frame = 1
Query:   10 TTLHAAASTGAVKAVRW--AHGRNEAQLHARDARGRTPFTVACQYGNLQAATWLVGNGVRVSRAPVLTYFNESPLLLAARAGHLPVVEFLVGRAADVNLADA 309
            T L  A+  G ++ V++  A G N A +HA  A G T  T AC+ G+   A  L+  G  +      +    +PL+ AARAGHL  V+FL+ + A+VN A A
Sbjct:   38 TPLMEASQEGHLELVKYLLAAGGNCANVHATTATGDTALTYACENGHTDVADVLLQAGADLEHE---SEGGRTPLMKAARAGHLCTVQFLISKGANVNRATA 136          
BLAST of mRNA_M-pyrifera_M_contig120984.4314.1 vs. uniprot
Match: A0A2J6SJX8_9HELO (Ankyrin n=1 Tax=Hyaloscypha bicolor E TaxID=1095630 RepID=A0A2J6SJX8_9HELO)

HSP 1 Score: 56.6 bits (135), Expect = 9.990e-7
Identity = 41/131 (31.30%), Postives = 62/131 (47.33%), Query Frame = 1
Query:   16 LHAAASTGAVKA--VRWAHGRNEAQLHARDARGRTPFTVACQYGNLQAATWLVGNGVRVSRAPVLTYF-----NESPLLLAARAGHLPVVEFLVGRAADVNLADAAGTTXXXXXXXXXXXXXXXXLLEAGA 387
            +H AA+ G+V+   V + HG     + ARD+ G  P +VAC +G++      +       R P+   F     ++SPL +AA+AGH+ VV  L+ R A +N  D  G T                L+ AGA
Sbjct:  711 IHVAAARGSVETIGVLYQHG---VAMDARDSVGHRPLSVACHHGHVDVVKTFLS-----LRQPLTMAFKDRPDHDSPLCVAAKAGHVSVVGLLIRRGATLNQRDEHGFTPLYYAAHYGRPQTLNILINAGA 833          
BLAST of mRNA_M-pyrifera_M_contig120984.4314.1 vs. uniprot
Match: A0A6Q2X1N4_ESOLU (KH domain-containing protein n=1 Tax=Esox lucius TaxID=8010 RepID=A0A6Q2X1N4_ESOLU)

HSP 1 Score: 54.3 bits (129), Expect = 6.630e-6
Identity = 37/107 (34.58%), Postives = 53/107 (49.53%), Query Frame = 1
Query:   10 TTLHAAASTGAVKAVRWAHGRNE-------AQLHARDARGRTPFTVACQYGNLQAATWLVGNGVRVSRAPVLTYFNESPLLLAARAGHLPVVEFLVGRAADVNLADA 309
            T L  AA  G ++ V++     E       A +HA  A G T  T AC+ G+   A  L+  G  +      +    +PL+ AARAGHL  V+FL+ + A+VN A A
Sbjct:  496 TPLMEAAQEGHLELVKYLLAAGETSDVPFRANVHATTATGDTALTYACENGHTDVADVLLQTGADLEHE---SEGGRTPLMKAARAGHLCTVQFLISKGANVNRATA 599          
BLAST of mRNA_M-pyrifera_M_contig120984.4314.1 vs. uniprot
Match: A0A8E0S7P3_9TREM (Fem-1 A n=1 Tax=Fasciolopsis buski TaxID=27845 RepID=A0A8E0S7P3_9TREM)

HSP 1 Score: 53.5 bits (127), Expect = 1.150e-5
Identity = 31/85 (36.47%), Postives = 46/85 (54.12%), Query Frame = 1
Query:   85 LHARDARGRTPFTVACQYGNLQAATWLVGN-GVRVSRAPVLTYFNES-----PLLLAARAGHLPVVEFLVGRAADVNLADAAGTT 321
            +H   + G+T    AC+ G+++ A +L+   G  V +  V+ + +E      PL  AA AGHLPVVE L+ R ADVN      +T
Sbjct:   32 VHRSFSDGQTCLIAACRNGHVKVAEYLIDECGADVEQVGVVEFESEQVEGVPPLWCAAAAGHLPVVELLISRGADVNRTTITNST 116          
BLAST of mRNA_M-pyrifera_M_contig120984.4314.1 vs. uniprot
Match: A0A352M619_9BACT (Uncharacterized protein n=1 Tax=Candidatus Wallbacteria bacterium TaxID=2053640 RepID=A0A352M619_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 1.540e-5
Identity = 33/103 (32.04%), Postives = 58/103 (56.31%), Query Frame = 1
Query:    1 MGWTTLHAAASTGAVKAVRWAHGRNEAQLHARDARGRTPFTVACQYGN----LQAATWLVGNGVRVSRAPVLTYFNESPLLLAARAGHLPVVEFLVGRAADVN 297
            +G T LH AA  G +KAV++   + +A ++A++  G TP  +A    N    ++   +L  NG ++      + +  +PL +AA AG+L ++EFL+G  A +N
Sbjct:   61 VGNTPLHHAALKGQIKAVKYLIMK-KAAVNAKNMHGLTPMHMAAMSENKAARMEVVEFLAANGAKIDEP---SKYEATPLCVAACAGNLEIMEFLIGAGAGLN 159          
BLAST of mRNA_M-pyrifera_M_contig120984.4314.1 vs. uniprot
Match: UPI00063EE7BF (ankyrin repeat and KH domain-containing protein 1-like n=1 Tax=Propithecus coquereli TaxID=379532 RepID=UPI00063EE7BF)

HSP 1 Score: 53.1 bits (126), Expect = 1.670e-5
Identity = 31/79 (39.24%), Postives = 43/79 (54.43%), Query Frame = 1
Query:   73 NEAQLHARDARGRTPFTVACQYGNLQAATWLVGNGVRVSRAPVLTYFNESPLLLAARAGHLPVVEFLVGRAADVNLADA 309
            N A +HA  A G T  T AC+ G+   A  L+  G  +      +    +PL+ AARAGHL  V+FL+ + A+VN A A
Sbjct:  338 NCANVHATTATGDTALTYACENGHTDVADVLLQAGADLEHE---SEGGRTPLMKAARAGHLCTVQFLISKGANVNRATA 413          
BLAST of mRNA_M-pyrifera_M_contig120984.4314.1 vs. uniprot
Match: A0A8C0C4B5_9AVES (KH domain-containing protein n=1 Tax=Buteo japonicus TaxID=224669 RepID=A0A8C0C4B5_9AVES)

HSP 1 Score: 52.8 bits (125), Expect = 2.280e-5
Identity = 38/108 (35.19%), Postives = 54/108 (50.00%), Query Frame = 1
Query:   10 TTLHAAASTGAVKAVR--------WAHGRNEAQLHARDARGRTPFTVACQYGNLQAATWLVGNGVRVSRAPVLTYFNESPLLLAARAGHLPVVEFLVGRAADVNLADA 309
            T L  AA  G ++ V+        W+ G   A +HA  A G T  T AC+ G+   A  L+  G  +      +    +PL+ AARAGHL  V+FL+ + A+VN A A
Sbjct:  360 TPLMEAAQEGHLELVKYLLAAGNCWSVGYR-ANVHATTATGDTALTYACENGHTDVADVLLQAGADLEHE---SEGGRTPLMKAARAGHLCTVQFLISKGANVNRATA 463          
BLAST of mRNA_M-pyrifera_M_contig120984.4314.1 vs. uniprot
Match: A0A8C0C1F0_9AVES (KH domain-containing protein n=1 Tax=Buteo japonicus TaxID=224669 RepID=A0A8C0C1F0_9AVES)

HSP 1 Score: 52.8 bits (125), Expect = 2.290e-5
Identity = 38/108 (35.19%), Postives = 54/108 (50.00%), Query Frame = 1
Query:   10 TTLHAAASTGAVKAVR--------WAHGRNEAQLHARDARGRTPFTVACQYGNLQAATWLVGNGVRVSRAPVLTYFNESPLLLAARAGHLPVVEFLVGRAADVNLADA 309
            T L  AA  G ++ V+        W+ G   A +HA  A G T  T AC+ G+   A  L+  G  +      +    +PL+ AARAGHL  V+FL+ + A+VN A A
Sbjct:  421 TPLMEAAQEGHLELVKYLLAAGNCWSVGYR-ANVHATTATGDTALTYACENGHTDVADVLLQAGADLEHE---SEGGRTPLMKAARAGHLCTVQFLISKGANVNRATA 524          
BLAST of mRNA_M-pyrifera_M_contig120984.4314.1 vs. uniprot
Match: A0A663EKX7_AQUCH (KH domain-containing protein n=1 Tax=Aquila chrysaetos chrysaetos TaxID=223781 RepID=A0A663EKX7_AQUCH)

HSP 1 Score: 52.8 bits (125), Expect = 2.290e-5
Identity = 38/108 (35.19%), Postives = 54/108 (50.00%), Query Frame = 1
Query:   10 TTLHAAASTGAVKAVR--------WAHGRNEAQLHARDARGRTPFTVACQYGNLQAATWLVGNGVRVSRAPVLTYFNESPLLLAARAGHLPVVEFLVGRAADVNLADA 309
            T L  AA  G ++ V+        W+ G   A +HA  A G T  T AC+ G+   A  L+  G  +      +    +PL+ AARAGHL  V+FL+ + A+VN A A
Sbjct:  528 TPLMEAAQEGHLELVKYLLAAGNCWSVGYR-ANVHATTATGDTALTYACENGHTDVADVLLQAGADLEHE---SEGGRTPLMKAARAGHLCTVQFLISKGANVNRATA 631          
BLAST of mRNA_M-pyrifera_M_contig120984.4314.1 vs. uniprot
Match: A0A2K6GZ63_PROCO (Ankyrin repeat and KH domain-containing protein 1-like n=1 Tax=Propithecus coquereli TaxID=379532 RepID=A0A2K6GZ63_PROCO)

HSP 1 Score: 52.4 bits (124), Expect = 3.100e-5
Identity = 30/77 (38.96%), Postives = 42/77 (54.55%), Query Frame = 1
Query:   79 AQLHARDARGRTPFTVACQYGNLQAATWLVGNGVRVSRAPVLTYFNESPLLLAARAGHLPVVEFLVGRAADVNLADA 309
            A +HA  A G T  T AC+ G+   A  L+  G  +      +    +PL+ AARAGHL  V+FL+ + A+VN A A
Sbjct:  335 ANVHATTATGDTALTYACENGHTDVADVLLQAGADLEHE---SEGGRTPLMKAARAGHLCTVQFLISKGANVNRATA 408          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120984.4314.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
M1EBP4_MUSPF4.970e-737.25Ankyrin repeat and KH domain containing 1 (Fragmen... [more]
A0A2J6SJX8_9HELO9.990e-731.30Ankyrin n=1 Tax=Hyaloscypha bicolor E TaxID=109563... [more]
A0A6Q2X1N4_ESOLU6.630e-634.58KH domain-containing protein n=1 Tax=Esox lucius T... [more]
A0A8E0S7P3_9TREM1.150e-536.47Fem-1 A n=1 Tax=Fasciolopsis buski TaxID=27845 Rep... [more]
A0A352M619_9BACT1.540e-532.04Uncharacterized protein n=1 Tax=Candidatus Wallbac... [more]
UPI00063EE7BF1.670e-539.24ankyrin repeat and KH domain-containing protein 1-... [more]
A0A8C0C4B5_9AVES2.280e-535.19KH domain-containing protein n=1 Tax=Buteo japonic... [more]
A0A8C0C1F0_9AVES2.290e-535.19KH domain-containing protein n=1 Tax=Buteo japonic... [more]
A0A663EKX7_AQUCH2.290e-535.19KH domain-containing protein n=1 Tax=Aquila chrysa... [more]
A0A2K6GZ63_PROCO3.100e-538.96Ankyrin repeat and KH domain-containing protein 1-... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120984contigM-pyrifera_M_contig120984:5..391 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size387
Cds size387
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815728.938095-CDS-M-pyrifera_M_contig120984:4..3911622815728.938095-CDS-M-pyrifera_M_contig120984:4..391Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120984 5..391 +
1692277541.7787924-CDS-M-pyrifera_M_contig120984:4..3911692277541.7787924-CDS-M-pyrifera_M_contig120984:4..391Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120984 5..391 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120984.4314.1prot_M-pyrifera_M_contig120984.4314.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120984 5..391 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120984.4314.1

>prot_M-pyrifera_M_contig120984.4314.1 ID=prot_M-pyrifera_M_contig120984.4314.1|Name=mRNA_M-pyrifera_M_contig120984.4314.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=129bp
MGWTTLHAAASTGAVKAVRWAHGRNEAQLHARDARGRTPFTVACQYGNLQ
AATWLVGNGVRVSRAPVLTYFNESPLLLAARAGHLPVVEFLVGRAADVNL
ADAAGTTPLLAAARRDHSDVVLFLLEAGA
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mRNA from alignment at M-pyrifera_M_contig120984:5..391+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120984.4314.1 ID=mRNA_M-pyrifera_M_contig120984.4314.1|Name=mRNA_M-pyrifera_M_contig120984.4314.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=387bp|location=Sequence derived from alignment at M-pyrifera_M_contig120984:5..391+ (Macrocystis pyrifera P11B4 male)
ATGGGCTGGACCACGCTGCACGCGGCAGCGTCCACCGGCGCGGTGAAAGC GGTGAGGTGGGCGCACGGCCGCAACGAGGCGCAGCTGCATGCGAGGGACG CACGCGGCCGCACGCCGTTCACGGTCGCGTGCCAGTACGGCAACCTGCAG GCCGCCACGTGGCTGGTCGGCAACGGCGTGCGCGTGTCGCGCGCGCCGGT GCTGACCTACTTCAACGAGTCGCCGCTGCTGCTGGCGGCGCGGGCGGGCC ATCTGCCGGTCGTCGAGTTCCTCGTCGGCCGCGCCGCCGACGTGAACCTG GCGGACGCGGCGGGCACCACCCCGCTGCTGGCGGCCGCCCGGCGCGACCA CTCGGACGTGGTGCTGTTCCTGCTGGAGGCGGGCGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120984:5..391+

>mRNA_M-pyrifera_M_contig120984.4314.1 ID=mRNA_M-pyrifera_M_contig120984.4314.1|Name=mRNA_M-pyrifera_M_contig120984.4314.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=774bp|location=Sequence derived from alignment at M-pyrifera_M_contig120984:5..391+ (Macrocystis pyrifera P11B4 male)
ATGGGCTGGACCACGCTGCACGCGGCAGCGTCCACCGGCGCGGTGAAAGC
GGTGAGGTGGGCGCACGGCCGCAACGAGGCGCAGCTGCATGCGAGGGACG
CACGCGGCCGCACGCCGTTCACGGTCGCGTGCCAGTACGGCAACCTGCAG
GCCGCCACGTGGCTGGTCGGCAACGGCGTGCGCGTGTCGCGCGCGCCGGT
GCTGACCTACTTCAACGAGTCGCCGCTGCTGCTGGCGGCGCGGGCGGGCC
ATCTGCCGGTCGTCGAGTTCCTCGTCGGCCGCGCCGCCGACGTGAACCTG
GCGGACGCGGCGGGCACCACCCCGCTGCTGGCGGCCGCCCGGCGCGACCA
CTCGGACGTGGTGCTGTTCCTGCTGGAGGCGGGCGCGATGGGCTGGACCA
CGCTGCACGCGGCAGCGTCCACCGGCGCGGTGAAAGCGGTGAGGTGGGCG
CACGGCCGCAACGAGGCGCAGCTGCATGCGAGGGACGCACGCGGCCGCAC
GCCGTTCACGGTCGCGTGCCAGTACGGCAACCTGCAGGCCGCCACGTGGC
TGGTCGGCAACGGCGTGCGCGTGTCGCGCGCGCCGGTGCTGACCTACTTC
AACGAGTCGCCGCTGCTGCTGGCGGCGCGGGCGGGCCATCTGCCGGTCGT
CGAGTTCCTCGTCGGCCGCGCCGCCGACGTGAACCTGGCGGACGCGGCGG
GCACCACCCCGCTGCTGGCGGCCGCCCGGCGCGACCACTCGGACGTGGTG
CTGTTCCTGCTGGAGGCGGGCGCG
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