mRNA_M-pyrifera_M_contig120967.4311.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120967.4311.1
Unique NamemRNA_M-pyrifera_M_contig120967.4311.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig120967.4311.1 vs. uniprot
Match: H2YA27_CIOSA (RRM domain-containing protein n=1 Tax=Ciona savignyi TaxID=51511 RepID=H2YA27_CIOSA)

HSP 1 Score: 99.8 bits (247), Expect = 9.950e-24
Identity = 53/108 (49.07%), Postives = 76/108 (70.37%), Query Frame = 1
Query:    1 RSPRRSSPRRSRSPSPMAVETKIHVANISRNVRKEHLQDIFETYGKVRTAEVAEDRHGAPRGFAYVDFEDWESAKKAVSYMNGGQIDGKKVKVEFKNPPRRAIRKRAS 324
            RSPRR   RR RSP+P    TK+H+ N+++N+ KEH+ +IF  YGKV++ ++  +R+G PRG AYV+F+D   A+KA+ YMNGGQIDG+ V +    P RR  ++R S
Sbjct:   89 RSPRRPI-RRERSPTPKP--TKLHIGNLTKNINKEHVTEIFSYYGKVKSVDMPMERNGLPRGLAYVEFDDHTEAEKALKYMNGGQIDGQVVTLRSVLPIRRRPQRRPS 193          
BLAST of mRNA_M-pyrifera_M_contig120967.4311.1 vs. uniprot
Match: F6W3V6_CIOIN (RRM domain-containing protein n=2 Tax=Ciona intestinalis TaxID=7719 RepID=F6W3V6_CIOIN)

HSP 1 Score: 97.4 bits (241), Expect = 3.970e-23
Identity = 52/107 (48.60%), Postives = 74/107 (69.16%), Query Frame = 1
Query:    1 RSPRRSSPRRSRSPSPMAVETKIHVANISRNVRKEHLQDIFETYGKVRTAEVAEDRHGAPRGFAYVDFEDWESAKKAVSYMNGGQIDGKKVKVEF-----KNPPRRA 306
            RSPRR   RR RSP+P    TK+HV N+++N+ KEH+ +IF  YGKV+T ++  +R+G PRG AYV+F+D   A KA+ +M+GGQIDG+ V +       + PPRR+
Sbjct:   87 RSPRRPI-RRERSPTPKP--TKLHVGNLTKNINKEHVNEIFSYYGKVKTVDMPMERNGIPRGLAYVEFDDHTEADKALKFMDGGQIDGQVVAIRAVLPIRRRPPRRS 190          
BLAST of mRNA_M-pyrifera_M_contig120967.4311.1 vs. uniprot
Match: A7RUM9_NEMVE (Predicted protein (Fragment) n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7RUM9_NEMVE)

HSP 1 Score: 86.3 bits (212), Expect = 5.400e-20
Identity = 39/81 (48.15%), Postives = 62/81 (76.54%), Query Frame = 1
Query:   61 TKIHVANISRNVRKEHLQDIFETYGKVRTAEVAEDR-HGAPRGFAYVDFEDWESAKKAVSYMNGGQIDGKKVKVEFKNPPR 300
            TK++VA+++RNV K+H+Q+IF  YG+V+T ++  DR +   RGFAYV++ D E  +KA+ +M+GGQIDG+++ V+   PPR
Sbjct:    1 TKLYVAHLTRNVNKDHVQEIFSVYGRVKTVDLPTDRTNNLSRGFAYVEYVDPEECEKALKHMDGGQIDGQEIAVQSVLPPR 81          
BLAST of mRNA_M-pyrifera_M_contig120967.4311.1 vs. uniprot
Match: A0A4Y2FXP1_ARAVE (RNA-binding protein with serine-rich domain 1-B n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2FXP1_ARAVE)

HSP 1 Score: 90.5 bits (223), Expect = 1.350e-19
Identity = 51/98 (52.04%), Postives = 70/98 (71.43%), Query Frame = 1
Query:   25 RRSRSPSPMAVETKIHVANISRNVRKEHLQDIFETYGKVRTAEVA--EDRHGAPRGFAYVDFEDWESAKKAVSYMNGGQIDGKKVK---VEFKNPPRR 303
            RR +SPSP    TKI V+ ++RNV KEH+Q+IF TYG +R  ++    DR    RGFAYV+FE+ E A+KA++YM+GGQIDG++VK   V+F   P+R
Sbjct:  143 RRRKSPSPRL--TKIQVSKLTRNVTKEHVQEIFSTYGPLRNVDLVIDRDRPHLSRGFAYVEFENPEDAEKALNYMDGGQIDGQEVKASLVQFHPAPQR 238          
BLAST of mRNA_M-pyrifera_M_contig120967.4311.1 vs. uniprot
Match: A0A369RYS5_9METZ (RNA-binding protein with serine-rich domain 1 n=2 Tax=Trichoplax TaxID=10227 RepID=A0A369RYS5_9METZ)

HSP 1 Score: 90.1 bits (222), Expect = 2.990e-19
Identity = 41/80 (51.25%), Postives = 58/80 (72.50%), Query Frame = 1
Query:   58 ETKIHVANISRNVRKEHLQDIFETYGKVRTAEVAEDR-HGAPRGFAYVDFEDWESAKKAVSYMNGGQIDGKKVKVEFKNP 294
            + KIH+  ++RN  K+H+Q+IF  YGKV+  +V  DR +G PRGFAY++FE+ +SA+ A+ YMNGGQIDG+ V V    P
Sbjct:  167 QCKIHLGRLTRNATKDHVQEIFSNYGKVKNVDVPTDRANGLPRGFAYIEFENGKSAENAIKYMNGGQIDGQAVTVALVLP 246          
BLAST of mRNA_M-pyrifera_M_contig120967.4311.1 vs. uniprot
Match: A0A7J7JE00_BUGNE (RNPS1 n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7JE00_BUGNE)

HSP 1 Score: 89.4 bits (220), Expect = 3.100e-19
Identity = 47/94 (50.00%), Postives = 63/94 (67.02%), Query Frame = 1
Query:   25 RRSRSPSPMAVETKIHVANISRNVRKEHLQDIFETYGKVRTAEVAEDRH-GAPRGFAYVDFEDWESAKKAVSYMNGGQIDGKKVKVEFKNPPRR 303
            +R R+PSP+   TKIH+  ++RNV K+H+Q+IF  YG V+  E+  +R    P G AYV+F D ESA KA  YMNGGQIDG+++ V    P RR
Sbjct:  105 KRRRTPSPLKA-TKIHIGKLTRNVTKDHIQEIFSVYGNVKLTELPMERKMNIPTGHAYVEFTDSESATKAEKYMNGGQIDGQEIVVRCVLPQRR 197          
BLAST of mRNA_M-pyrifera_M_contig120967.4311.1 vs. uniprot
Match: A0A0R3RX65_9BILA (RRM domain-containing protein n=1 Tax=Elaeophora elaphi TaxID=1147741 RepID=A0A0R3RX65_9BILA)

HSP 1 Score: 86.3 bits (212), Expect = 1.580e-18
Identity = 48/105 (45.71%), Postives = 68/105 (64.76%), Query Frame = 1
Query:    1 RSPRRSSPRRSRSPSPMAVETKIHVANISRNVRKEHLQDIFETYGKVRTAEVAEDRHGAP--RGFAYVDFEDWESAKKAVSYMNGGQIDGKKVKVEFKNPPRRAI 309
            RSP ++SP R  +P P     ++ V N+SRNV KEHL +IF  YG ++T E+  DR      RG+ YV+FE  E A+KA+ +M+GGQIDG++V  E  +PPR  +
Sbjct:   69 RSPFQASPVRKATPPPR----RLCVRNLSRNVTKEHLSEIFSVYGSLKTCELPMDRQHTHLGRGYGYVEFEQPEDAEKALKHMDGGQIDGQEVTCELTHPPRSTL 169          
BLAST of mRNA_M-pyrifera_M_contig120967.4311.1 vs. uniprot
Match: A0A8C2QW01_CAPHI (RNA-binding protein with serine-rich domain 1 n=1 Tax=Capra hircus TaxID=9925 RepID=A0A8C2QW01_CAPHI)

HSP 1 Score: 87.4 bits (215), Expect = 1.680e-18
Identity = 41/90 (45.56%), Postives = 62/90 (68.89%), Query Frame = 1
Query:   34 RSPSPMAVETKIHVANISRNVRKEHLQDIFETYGKVRTAEVAEDRHGAPRGFAYVDFEDWESAKKAVSYMNGGQIDGKKVKVEFKNPPRR 303
            R PSP    TK+H+A ++RNV K+H+++IF T+GKVR  ++  +R       AYV+FE  + A+KA+ YM+GGQIDG++++     PPRR
Sbjct:  123 RRPSPSPKPTKLHIARLTRNVTKDHIREIFSTFGKVRVIDMPVERMHPGLSDAYVEFETPDGAEKALKYMDGGQIDGQEIRATAVPPPRR 212          
BLAST of mRNA_M-pyrifera_M_contig120967.4311.1 vs. uniprot
Match: A0A452GB38_CAPHI (RNA-binding protein with serine-rich domain 1 n=1 Tax=Capra hircus TaxID=9925 RepID=A0A452GB38_CAPHI)

HSP 1 Score: 86.3 bits (212), Expect = 4.500e-18
Identity = 41/90 (45.56%), Postives = 61/90 (67.78%), Query Frame = 1
Query:   34 RSPSPMAVETKIHVANISRNVRKEHLQDIFETYGKVRTAEVAEDRHGAPRGFAYVDFEDWESAKKAVSYMNGGQIDGKKVKVEFKNPPRR 303
            R PSP    TK+H+A ++RNV K+H+++IF T+GKVR  ++   R       AYV+FE  + A+KA+ YM+GGQIDG++++     PPRR
Sbjct:  144 RRPSPSPKPTKLHIARLTRNVTKDHIREIFSTFGKVRVIDMPVKRMHPGLSDAYVEFETPDGAEKALKYMDGGQIDGQEIRATAVPPPRR 233          
BLAST of mRNA_M-pyrifera_M_contig120967.4311.1 vs. uniprot
Match: A0A7S2X9B6_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2X9B6_9EUKA)

HSP 1 Score: 85.1 bits (209), Expect = 6.960e-18
Identity = 40/81 (49.38%), Postives = 60/81 (74.07%), Query Frame = 1
Query:   61 TKIHVANISRNVRKEHLQDIFETYGKVRTAEVAED-RHGAPRGFAYVDFEDWESAKKAVSYMNGGQIDGKKVKVEFKNPPR 300
            T +HV N++RNV+KEHL++IF  YGKV+  E+A D +   P GFA+V+FE  + A++A+ +M+ GQIDG K+ V++K  PR
Sbjct:   55 TTLHVMNLTRNVQKEHLEEIFGVYGKVKEVEIALDPKVKLPLGFAFVEFESKDEAEEAIKFMDQGQIDGNKIHVKYKFVPR 135          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120967.4311.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
H2YA27_CIOSA9.950e-2449.07RRM domain-containing protein n=1 Tax=Ciona savign... [more]
F6W3V6_CIOIN3.970e-2348.60RRM domain-containing protein n=2 Tax=Ciona intest... [more]
A7RUM9_NEMVE5.400e-2048.15Predicted protein (Fragment) n=2 Tax=Nematostella ... [more]
A0A4Y2FXP1_ARAVE1.350e-1952.04RNA-binding protein with serine-rich domain 1-B n=... [more]
A0A369RYS5_9METZ2.990e-1951.25RNA-binding protein with serine-rich domain 1 n=2 ... [more]
A0A7J7JE00_BUGNE3.100e-1950.00RNPS1 n=1 Tax=Bugula neritina TaxID=10212 RepID=A0... [more]
A0A0R3RX65_9BILA1.580e-1845.71RRM domain-containing protein n=1 Tax=Elaeophora e... [more]
A0A8C2QW01_CAPHI1.680e-1845.56RNA-binding protein with serine-rich domain 1 n=1 ... [more]
A0A452GB38_CAPHI4.500e-1845.56RNA-binding protein with serine-rich domain 1 n=1 ... [more]
A0A7S2X9B6_9EUKA6.960e-1849.38Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120967contigM-pyrifera_M_contig120967:2..374 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score100.5
Seed ortholog evalue5e-19
Seed eggNOG ortholog51511.ENSCSAVP00000002175
Preferred nameRNPS1
KEGG koko:K14325
KEGG Pathwayko03013,ko03015,map03013,map03015
KEGG ModuleM00430
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000375,GO:0000377,GO:0000381,GO:0000398,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003730,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008152,GO:0008380,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0010941,GO:0010942,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0031123,GO:0031124,GO:0031323,GO:0031324,GO:0031503,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0033036,GO:0033119,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0042886,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045184,GO:0045934,GO:0046483,GO:0046700,GO:0046907,GO:0048024,GO:0048025,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050657,GO:0050658,GO:0050684,GO:0050686,GO:0050789,GO:0050794,GO:0051028,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051236,GO:0051252,GO:0051253,GO:0051641,GO:0051649,GO:0060255,GO:0061574,GO:0065007,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1903311,GO:1903312
EggNOG free text desc.negative regulation of mRNA splicing, via spliceosome
EggNOG OGs39ACZ@33154,3BB9V@33208,3CSYD@33213,4846J@7711,KOG4209@1,KOG4209@2759
Ec32 ortholog descriptionRNA recognition motif domain
Ec32 orthologEc-11_003090.1
COG Functional cat.A
Best tax levelChordata
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019
Exons2
Model size324
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815728.8241074-CDS-M-pyrifera_M_contig120967:1..2501622815728.8241074-CDS-M-pyrifera_M_contig120967:1..250Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120967 2..250 +
1692277541.7349274-CDS-M-pyrifera_M_contig120967:1..2501692277541.7349274-CDS-M-pyrifera_M_contig120967:1..250Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120967 2..250 +
1622815728.8358967-CDS-M-pyrifera_M_contig120967:299..3741622815728.8358967-CDS-M-pyrifera_M_contig120967:299..374Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120967 300..374 +
1692277541.7470992-CDS-M-pyrifera_M_contig120967:299..3741692277541.7470992-CDS-M-pyrifera_M_contig120967:299..374Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120967 300..374 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120967.4311.1prot_M-pyrifera_M_contig120967.4311.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120967 2..374 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120967.4311.1

>prot_M-pyrifera_M_contig120967.4311.1 ID=prot_M-pyrifera_M_contig120967.4311.1|Name=mRNA_M-pyrifera_M_contig120967.4311.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=108bp
RSPRRSSPRRSRSPSPMAVETKIHVANISRNVRKEHLQDIFETYGKVRTA
EVAEDRHGAPRGFAYVDFEDWESAKKAVSYMNGGQIDGKKVKVEFKNPPR
RAIRKRAS
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mRNA from alignment at M-pyrifera_M_contig120967:2..374+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120967.4311.1 ID=mRNA_M-pyrifera_M_contig120967.4311.1|Name=mRNA_M-pyrifera_M_contig120967.4311.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=373bp|location=Sequence derived from alignment at M-pyrifera_M_contig120967:2..374+ (Macrocystis pyrifera P11B4 male)
CGCAGCCCTCGTCGCAGCAGCCCCCGCCGCAGCCGCAGCCCAAGCCCTAT GGCTGTAGAGACGAAGATTCATGTTGCGAACATCTCAAGGAATGTTCGCA AGGAGCACTTGCAGGACATCTTCGAGACGTACGGCAAGGTGCGCACAGCA GAGGTTGCCGAGGATAGGCACGGCGCTCCGCGTGGATTCGCTTACGTAGA CTTCGAGGACTGGGAGTCTGCCAAGAAGGCTGTCAGTTACATGAACGGGG TAAGTGGGGCCCCCAATCCTCATGAATGACTGGTCTAACAAGGCTTAGGG ACAAATCGATGGCAAGAAGGTGAAGGTCGAGTTCAAGAACCCACCAAGGA GGGCTATCCGAAAGCGTGCGTCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120967:2..374+

>mRNA_M-pyrifera_M_contig120967.4311.1 ID=mRNA_M-pyrifera_M_contig120967.4311.1|Name=mRNA_M-pyrifera_M_contig120967.4311.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=648bp|location=Sequence derived from alignment at M-pyrifera_M_contig120967:2..374+ (Macrocystis pyrifera P11B4 male)
CGCAGCCCTCGTCGCAGCAGCCCCCGCCGCAGCCGCAGCCCAAGCCCTAT
GGCTGTAGAGACGAAGATTCATGTTGCGAACATCTCAAGGAATGTTCGCA
AGGAGCACTTGCAGGACATCTTCGAGACGTACGGCAAGGTGCGCACAGCA
GAGGTTGCCGAGGATAGGCACGGCGCTCCGCGTGGATTCGCTTACGTAGA
CTTCGAGGACTGGGAGTCTGCCAAGAAGGCTGTCAGTTACATGAACGGGC
GCAGCCCTCGTCGCAGCAGCCCCCGCCGCAGCCGCAGCCCAAGCCCTATG
GCTGTAGAGACGAAGATTCATGTTGCGAACATCTCAAGGAATGTTCGCAA
GGAGCACTTGCAGGACATCTTCGAGACGTACGGCAAGGTGCGCACAGCAG
AGGTTGCCGAGGATAGGCACGGCGCTCCGCGTGGATTCGCTTACGTAGAC
TTCGAGGACTGGGAGTCTGCCAAGAAGGCTGTCAGTTACATGAACGGGGG
ACAAATCGATGGCAAGAAGGTGAAGGTCGAGTTCAAGAACCCACCAAGGA
GGGCTATCCGAAAGCGTGCGTCCGGACAAATCGATGGCAAGAAGGTGAAG
GTCGAGTTCAAGAACCCACCAAGGAGGGCTATCCGAAAGCGTGCGTCC
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