mRNA_M-pyrifera_M_contig120961.4310.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120961.4310.1
Unique NamemRNA_M-pyrifera_M_contig120961.4310.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig120961.4310.1 vs. uniprot
Match: A0A2K1K6U7_PHYPA (Snurportin-1 n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1K6U7_PHYPA)

HSP 1 Score: 125 bits (315), Expect = 2.880e-31
Identity = 60/149 (40.27%), Postives = 93/149 (62.42%), Query Frame = 1
Query:   40 EGLRRQLTVPEPLQELPDDLEEGWTGVAVPPGERCLVVAANSSTAARDMEGRLLERFASGLPNGAHLAKGKAGA--VTLLDCVYHEESETFFVLDIICWKGTLYYECDAAFRRFWLQSRLAECPLLAGTSARNHYRFLPAATFGCSPAA 480
            E   RQL +PE + ++P  L++ W  +  P G+RCLV++AN  T +R   GR+L  F S LPNGA   +  AG+    +LDC++HE  +T++V+D++CW+G   ++C A FR FW+ ++LAE   L   SA +HY+F     + C+ AA
Sbjct:  120 EFFARQLMLPEWMVDIPSYLKKDWFVMPRPEGQRCLVISANGITLSRQRNGRILHSFPSALPNGARTKEVAAGSHVYCILDCIFHEPDKTYYVIDMMCWRGYSLFDCTAEFRFFWMTTKLAETGALGAPSAHHHYQFSVVPVYECNVAA 268          
BLAST of mRNA_M-pyrifera_M_contig120961.4310.1 vs. uniprot
Match: UPI001455AFF6 (snurportin-1-like isoform X1 n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI001455AFF6)

HSP 1 Score: 123 bits (309), Expect = 4.750e-31
Identity = 65/154 (42.21%), Postives = 89/154 (57.79%), Query Frame = 1
Query:    7 SKARSRRKEDQEGLRRQLTVPEPLQELPDDLEEGWTGVAVPPGERCLVVAANSSTAARDMEGRLLERFASGLPNGAHLAKGKAGAVTLLDCVYHEESETFFVLDIICWKGTLYYECDAAFRRFWLQSRLAECPLLAGTSARNHYRFLPAATFGC 468
            SK   +RK+     R QL + E L E+P+DL + W  V  P G+R  VVAA   T++    G  L  F S LP G    K      +LLDC++HE S TF++LDI+CW+G   Y+ D  FR FWL S++A+ P+L  +S+ N +RFLP   F C
Sbjct:   93 SKTNVKRKKRPRYYRNQLMLSEWLVEVPNDLAKDWLMVLCPVGKRTFVVAAKGKTSSYSRSGYRLSTFPSQLPGGCRKNKHNNTEYSLLDCIFHEASRTFYILDIMCWRGHPVYDSDTEFRFFWLHSKVADVPILTKSSSTNPFRFLPLPNFPC 246          
BLAST of mRNA_M-pyrifera_M_contig120961.4310.1 vs. uniprot
Match: A0A8J4VMT4_9ROSI (Snurportin-1 n=1 Tax=Castanea mollissima TaxID=60419 RepID=A0A8J4VMT4_9ROSI)

HSP 1 Score: 122 bits (305), Expect = 6.450e-31
Identity = 58/144 (40.28%), Postives = 87/144 (60.42%), Query Frame = 1
Query:   52 RQLTVPEPLQELPDDLEEGWTGVAVPPGERCLVVAANSSTAARDMEGRLLERFASGLPNGAHL--AKGKAGAVTLLDCVYHEESETFFVLDIICWKGTLYYECDAAFRRFWLQSRLAECPLLAGTSARNHYRFLPAATFGCSPA 477
            RQL +PE + ++PD L + W   A P G+RC VV++N +T +R   G +L  F S LP+GA    + G A + ++LDC++HE  +T++V+D++CW+    Y+C A FR FWL S+LAE       S  + YRF P   + C  A
Sbjct:   87 RQLMLPEWMIDVPDQLPQDWYVFARPAGKRCFVVSSNGTTVSRLRNGSMLHHFPSALPSGARTKDSSGSAQSYSILDCIFHESDQTYYVIDMVCWREYSLYDCTAEFRFFWLSSKLAETGACDPPSQYHRYRFSPVRVYNCDQA 230          
BLAST of mRNA_M-pyrifera_M_contig120961.4310.1 vs. uniprot
Match: A0A251RVA6_HELAN (Snurportin-1 n=2 Tax=Asteraceae TaxID=4210 RepID=A0A251RVA6_HELAN)

HSP 1 Score: 123 bits (309), Expect = 1.560e-30
Identity = 58/140 (41.43%), Postives = 83/140 (59.29%), Query Frame = 1
Query:   55 QLTVPEPLQELPDDLEEGWTGVAVPPGERCLVVAANSSTAARDMEGRLLERFASGLPNGAHLAKGKAGAVT--LLDCVYHEESETFFVLDIICWKGTLYYECDAAFRRFWLQSRLAECPLLAGTSARNHYRFLPAATFGC 468
            QL +PE + ++PD L E W   A P G+RC VV++N +T +R   G LL RF S LPNGA   +      +  +LDC++HE  +T++V+D++CW G  +YEC A FR FW+ S+L E     G S  + YRF     + C
Sbjct:  102 QLMLPEWMIDVPDRLNEDWYVFARPAGKRCFVVSSNGTTVSRLRNGSLLHRFPSALPNGARTRESSRSGQSYCILDCIFHESDQTYYVIDMVCWAGISFYECTAEFRFFWMNSKLVESGACVGPSTYHRYRFSLVPVYSC 241          
BLAST of mRNA_M-pyrifera_M_contig120961.4310.1 vs. uniprot
Match: A0A2C9UIZ0_MANES (Snurportin-1 n=4 Tax=Crotonoideae TaxID=235631 RepID=A0A2C9UIZ0_MANES)

HSP 1 Score: 123 bits (309), Expect = 1.710e-30
Identity = 58/141 (41.13%), Postives = 87/141 (61.70%), Query Frame = 1
Query:   52 RQLTVPEPLQELPDDLEEGWTGVAVPPGERCLVVAANSSTAARDMEGRLLERFASGLPNGAHL--AKGKAGAVTLLDCVYHEESETFFVLDIICWKGTLYYECDAAFRRFWLQSRLAECPLLAGTSARNHYRFLPAATFGC 468
            RQL +PE + ++PD L + W   A P G+RC VV++N +T +R   G +L RF S LPNGA +  A G + + ++LDC++HE  +T++V+D++CW+G   Y+C A FR FWL S+L E       S  + YRF     + C
Sbjct:  106 RQLMLPEWMIDIPDCLAQDWYVFARPAGKRCFVVSSNGTTVSRQRNGSILHRFPSALPNGAKIRDASGPSQSYSILDCIFHERDQTYYVIDMVCWRGYSLYDCTAEFRFFWLNSKLGETGACNPPSFYHKYRFSTVPIYNC 246          
BLAST of mRNA_M-pyrifera_M_contig120961.4310.1 vs. uniprot
Match: A0A0P1AJ51_PLAHL (Snurportin-1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AJ51_PLAHL)

HSP 1 Score: 122 bits (306), Expect = 2.820e-30
Identity = 65/157 (41.40%), Postives = 93/157 (59.24%), Query Frame = 1
Query:   28 KEDQEGLRRQLTVPEPLQELPDDLE-------EGWTGVAVPPGERCLVVAANSSTAARDMEGRLLERFASGLPNGAHLAKGKAGAVTLLDCVYHEESETFFVLDIICWKGTLYYECDAAFRRFWLQSRLAECPLLAGTSARNHYRFLPAATFGCSPA 477
            K+ +E   +QL  PE L ++P DL        EGW  +  P G+RCLVVA   +T AR   G +L +F S LP G++     +    +LDC+Y E++ETF+VLDI+CWKG L Y C + FR +W++ +L+E  L A  S+ N +RFLP   + C  A
Sbjct:   76 KQRREYYSKQLMTPEWLLDVPKDLNGMGSALGEGWYVLPRPEGKRCLVVANGGNTIARIPSGNILNKFPSALPCGSYKTNKSSDGYCILDCIYQEQNETFYVLDIMCWKGYLLYNCTSEFRLYWMRDKLSE-GLTATVSSANPFRFLPIPCYECDQA 231          
BLAST of mRNA_M-pyrifera_M_contig120961.4310.1 vs. uniprot
Match: A0A5N6RNE7_9ROSI (Snurportin-1 n=1 Tax=Carpinus fangiana TaxID=176857 RepID=A0A5N6RNE7_9ROSI)

HSP 1 Score: 122 bits (307), Expect = 3.280e-30
Identity = 59/141 (41.84%), Postives = 85/141 (60.28%), Query Frame = 1
Query:   52 RQLTVPEPLQELPDDLEEGWTGVAVPPGERCLVVAANSSTAARDMEGRLLERFASGLPNGAHL--AKGKAGAVTLLDCVYHEESETFFVLDIICWKGTLYYECDAAFRRFWLQSRLAECPLLAGTSARNHYRFLPAATFGC 468
            RQL +PE + ++PD L + W   A P G+RC VV+ N +T +R   G +L RF S LPNGA      G A + T+LDC++HE  +T++V+D++CW+G   ++C A FR FWL S+LAE       S  + YRF     + C
Sbjct:  105 RQLMLPEWMIDVPDQLAQDWYVFARPSGKRCFVVSTNGTTVSRLRNGSMLHRFPSALPNGARTRDTSGSAQSYTILDCIFHEADQTYYVIDMVCWRGYSLHDCAAEFRFFWLNSKLAETGAFDPPSQYHRYRFSLVPVYNC 245          
BLAST of mRNA_M-pyrifera_M_contig120961.4310.1 vs. uniprot
Match: A0A7S0REM9_9CHLO (Snurportin-1 (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0REM9_9CHLO)

HSP 1 Score: 121 bits (304), Expect = 4.430e-30
Identity = 58/141 (41.13%), Postives = 81/141 (57.45%), Query Frame = 1
Query:   52 RQLTVPEPLQELPDDLEEGWTGVAVPPGERCLVVAANSSTAARDMEGRLLERFASGLPNGAHLAKGKAGAVTLLDCVYHEESETFFVLDIICWKGTLYYECDAAFRRFWLQSRLAECPLLAGTSARNHYRFLPAATFGCSP 474
            +QL  PE + ++P DL   W  ++ P GERCLV+A+   T +R   G +L RF S LPNG+           +LD V+HE  +T++V DI+CWKG   Y+C   FR FW+QS+L E  +L      + YRF  +  F CSP
Sbjct:  121 KQLVTPEWMVDIPSDLRSNWYVLSHPEGERCLVIASRGGTISRRRNGGILHRFPSWLPNGSRATSAANDQYCILDAVFHEPDQTYYVNDIMCWKGQAVYDCAYEFRMFWVQSKLTETRVLEEPGHLHKYRFALSPVFECSP 261          
BLAST of mRNA_M-pyrifera_M_contig120961.4310.1 vs. uniprot
Match: UPI001CFB2C46 (snurportin-1 n=2 Tax=Anacardiaceae TaxID=4011 RepID=UPI001CFB2C46)

HSP 1 Score: 122 bits (306), Expect = 4.450e-30
Identity = 58/142 (40.85%), Postives = 86/142 (60.56%), Query Frame = 1
Query:   55 QLTVPEPLQELPDDLEEGWTGVAVPPGERCLVVAANSSTAARDMEGRLLERFASGLPNGAHLA--KGKAGAVTLLDCVYHEESETFFVLDIICWKGTLYYECDAAFRRFWLQSRLAECPLLAGTSARNHYRFLPAATFGCSP 474
            QL +PE + ++PD L   W  +A P G+RC+VV++N +T +R   G +L  F S LP GA      G + +  +LDC++HE  +T++V+D++CW+G   Y+C A FR FWL S+LAE       S  + +RF P A F C P
Sbjct:  104 QLMLPEWMIDVPDRLTHDWYVLARPAGKRCIVVSSNGTTVSRLRNGSVLHHFPSALPCGARTRDQSGSSQSYCILDCIFHESDQTYYVIDMVCWRGYSLYDCTAEFRFFWLNSKLAETGASDSPSRYHKFRFSPVAVFNCDP 245          
BLAST of mRNA_M-pyrifera_M_contig120961.4310.1 vs. uniprot
Match: A0A8J4QZU4_9ROSI (Snurportin-1 n=2 Tax=Fagaceae TaxID=3503 RepID=A0A8J4QZU4_9ROSI)

HSP 1 Score: 120 bits (300), Expect = 5.450e-30
Identity = 58/144 (40.28%), Postives = 87/144 (60.42%), Query Frame = 1
Query:   52 RQLTVPEPLQELPDDLEEGWTGVAVPPGERCLVVAANSSTAARDMEGRLLERFASGLPNGAHL--AKGKAGAVTLLDCVYHEESETFFVLDIICWKGTLYYECDAAFRRFWLQSRLAECPLLAGTSARNHYRFLPAATFGCSPA 477
            RQL +PE + ++PD L + W   A P G+RC VV++N +T +R   G +L  F S LP+GA    + G A + ++LDC++HE  +T++V+D++CW+    Y+C A FR FWL S+LAE  L    S  + YRF     + C  A
Sbjct:   87 RQLMLPEWMIDVPDQLPQDWYVFARPAGKRCFVVSSNGTTVSRLRNGSMLHHFPSALPSGARTKDSSGSAQSYSILDCIFHESDQTYYVIDMVCWREYSLYDCTAEFRFFWLSSKLAETGLCDPPSQYHRYRFSLVPVYNCDQA 230          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120961.4310.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2K1K6U7_PHYPA2.880e-3140.27Snurportin-1 n=2 Tax=Physcomitrium patens TaxID=32... [more]
UPI001455AFF64.750e-3142.21snurportin-1-like isoform X1 n=1 Tax=Asterias rube... [more]
A0A8J4VMT4_9ROSI6.450e-3140.28Snurportin-1 n=1 Tax=Castanea mollissima TaxID=604... [more]
A0A251RVA6_HELAN1.560e-3041.43Snurportin-1 n=2 Tax=Asteraceae TaxID=4210 RepID=A... [more]
A0A2C9UIZ0_MANES1.710e-3041.13Snurportin-1 n=4 Tax=Crotonoideae TaxID=235631 Rep... [more]
A0A0P1AJ51_PLAHL2.820e-3041.40Snurportin-1 n=1 Tax=Plasmopara halstedii TaxID=47... [more]
A0A5N6RNE7_9ROSI3.280e-3041.84Snurportin-1 n=1 Tax=Carpinus fangiana TaxID=17685... [more]
A0A7S0REM9_9CHLO4.430e-3041.13Snurportin-1 (Fragment) n=1 Tax=Pyramimonas obovat... [more]
UPI001CFB2C464.450e-3040.85snurportin-1 n=2 Tax=Anacardiaceae TaxID=4011 RepI... [more]
A0A8J4QZU4_9ROSI5.450e-3040.28Snurportin-1 n=2 Tax=Fagaceae TaxID=3503 RepID=A0A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120961contigM-pyrifera_M_contig120961:55..534 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score127.5
Seed ortholog evalue5.6e-27
Seed eggNOG ortholog3218.PP1S62_76V6.1
KEGG koko:K13151
KEGG Pathwayko03013,map03013
Hectar predicted targeting categoryother localisation
EggNOG free text desc.snRNA import into nucleus
EggNOG OGs37I8F@33090,3G9WR@35493,KOG3132@1,KOG3132@2759
COG Functional cat.A
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03041
Exons1
Model size480
Cds size480
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815728.7861102-CDS-M-pyrifera_M_contig120961:54..5341622815728.7861102-CDS-M-pyrifera_M_contig120961:54..534Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120961 55..534 +
1692277541.723456-CDS-M-pyrifera_M_contig120961:54..5341692277541.723456-CDS-M-pyrifera_M_contig120961:54..534Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120961 55..534 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120961.4310.1prot_M-pyrifera_M_contig120961.4310.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120961 55..534 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120961.4310.1

>prot_M-pyrifera_M_contig120961.4310.1 ID=prot_M-pyrifera_M_contig120961.4310.1|Name=mRNA_M-pyrifera_M_contig120961.4310.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=160bp
KRSKARSRRKEDQEGLRRQLTVPEPLQELPDDLEEGWTGVAVPPGERCLV
VAANSSTAARDMEGRLLERFASGLPNGAHLAKGKAGAVTLLDCVYHEESE
TFFVLDIICWKGTLYYECDAAFRRFWLQSRLAECPLLAGTSARNHYRFLP
AATFGCSPAA
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mRNA from alignment at M-pyrifera_M_contig120961:55..534+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120961.4310.1 ID=mRNA_M-pyrifera_M_contig120961.4310.1|Name=mRNA_M-pyrifera_M_contig120961.4310.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=480bp|location=Sequence derived from alignment at M-pyrifera_M_contig120961:55..534+ (Macrocystis pyrifera P11B4 male)
AAGCGCAGCAAGGCCCGCTCACGCAGGAAGGAGGACCAGGAGGGCTTGCG CCGGCAGCTTACTGTGCCAGAGCCGCTGCAGGAGCTGCCAGACGACCTGG AGGAGGGCTGGACCGGCGTGGCAGTGCCGCCTGGCGAGCGATGCCTCGTG GTGGCCGCCAACTCCAGCACAGCAGCGCGTGACATGGAGGGCCGCCTCCT GGAGAGGTTCGCCTCCGGCCTCCCCAACGGCGCACACCTCGCGAAGGGCA AGGCAGGGGCCGTGACGCTGCTGGACTGCGTCTACCACGAGGAGAGCGAG ACGTTCTTCGTGCTGGACATCATCTGCTGGAAGGGAACGCTCTACTACGA ATGCGACGCCGCATTCAGGCGCTTTTGGCTGCAGTCAAGGCTCGCAGAGT GTCCCCTCTTGGCCGGCACCTCGGCCAGGAACCACTATCGGTTCCTTCCC GCCGCAACGTTTGGCTGCTCGCCCGCAGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120961:55..534+

>mRNA_M-pyrifera_M_contig120961.4310.1 ID=mRNA_M-pyrifera_M_contig120961.4310.1|Name=mRNA_M-pyrifera_M_contig120961.4310.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=960bp|location=Sequence derived from alignment at M-pyrifera_M_contig120961:55..534+ (Macrocystis pyrifera P11B4 male)
AAGCGCAGCAAGGCCCGCTCACGCAGGAAGGAGGACCAGGAGGGCTTGCG
CCGGCAGCTTACTGTGCCAGAGCCGCTGCAGGAGCTGCCAGACGACCTGG
AGGAGGGCTGGACCGGCGTGGCAGTGCCGCCTGGCGAGCGATGCCTCGTG
GTGGCCGCCAACTCCAGCACAGCAGCGCGTGACATGGAGGGCCGCCTCCT
GGAGAGGTTCGCCTCCGGCCTCCCCAACGGCGCACACCTCGCGAAGGGCA
AGGCAGGGGCCGTGACGCTGCTGGACTGCGTCTACCACGAGGAGAGCGAG
ACGTTCTTCGTGCTGGACATCATCTGCTGGAAGGGAACGCTCTACTACGA
ATGCGACGCCGCATTCAGGCGCTTTTGGCTGCAGTCAAGGCTCGCAGAGT
GTCCCCTCTTGGCCGGCACCTCGGCCAGGAACCACTATCGGTTCCTTCCC
GCCGCAACGTTTGGCTGCTCGCCCGCAGCCAAGCGCAGCAAGGCCCGCTC
ACGCAGGAAGGAGGACCAGGAGGGCTTGCGCCGGCAGCTTACTGTGCCAG
AGCCGCTGCAGGAGCTGCCAGACGACCTGGAGGAGGGCTGGACCGGCGTG
GCAGTGCCGCCTGGCGAGCGATGCCTCGTGGTGGCCGCCAACTCCAGCAC
AGCAGCGCGTGACATGGAGGGCCGCCTCCTGGAGAGGTTCGCCTCCGGCC
TCCCCAACGGCGCACACCTCGCGAAGGGCAAGGCAGGGGCCGTGACGCTG
CTGGACTGCGTCTACCACGAGGAGAGCGAGACGTTCTTCGTGCTGGACAT
CATCTGCTGGAAGGGAACGCTCTACTACGAATGCGACGCCGCATTCAGGC
GCTTTTGGCTGCAGTCAAGGCTCGCAGAGTGTCCCCTCTTGGCCGGCACC
TCGGCCAGGAACCACTATCGGTTCCTTCCCGCCGCAACGTTTGGCTGCTC
GCCCGCAGCC
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