mRNA_M-pyrifera_M_contig1209.4300.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1209.4300.1
Unique NamemRNA_M-pyrifera_M_contig1209.4300.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig1209.4300.1 vs. uniprot
Match: A0A2A4JRI1_HELVI (Uncharacterized protein n=1 Tax=Heliothis virescens TaxID=7102 RepID=A0A2A4JRI1_HELVI)

HSP 1 Score: 58.5 bits (140), Expect = 4.350e-8
Identity = 34/85 (40.00%), Postives = 48/85 (56.47%), Query Frame = 1
Query:    1 DEAWICDSGASTHMTPSADCMIHYRECNLT-LRIADGSTRAIKGYGDVSVVFRSGNGPLLLTNVAHVPDLRYHLLSLPTLVKNGH 252
            D  W  DSGAS HMT   D M    E ++  + +A+    A+KG G V +   S +  + + NV +VP L  +LLS+ T+VKNGH
Sbjct:  250 DNKWFLDSGASMHMTSRKDWMYKVTEPSVNNITVANKEPLAVKGVGCVDIHI-SQDKVIQVNNVLYVPGLAANLLSVSTIVKNGH 333          
BLAST of mRNA_M-pyrifera_M_contig1209.4300.1 vs. uniprot
Match: A0A6H5KG88_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG88_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 5.220e-7
Identity = 30/85 (35.29%), Postives = 51/85 (60.00%), Query Frame = 1
Query:   10 WICDSGASTHMTPSADCMIHYRECNLTLRIADGSTRAIK--GYGDVSVVFRSGNG--PLLLTNVAHVPDLRYHLLSLPTLVKNGH 252
            ++ D+ A+  M    D  ++YRE +  ++   G    +   GYGDV++V ++ +G  P+ + N AHVP+  Y+LLSL +LV+ GH
Sbjct:  548 YVADTAATCSMFRCTDNFVNYREHSGWVKGIGGDKAPVPLLGYGDVTLVLQTEDGGVPVPVRNAAHVPEAPYNLLSLSSLVEEGH 632          
BLAST of mRNA_M-pyrifera_M_contig1209.4300.1 vs. uniprot
Match: A0A2I0V6M5_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0V6M5_9ASPA)

HSP 1 Score: 52.8 bits (125), Expect = 4.680e-6
Identity = 30/85 (35.29%), Postives = 51/85 (60.00%), Query Frame = 1
Query:    4 EAWICDSGASTHMTPSADCMIH---YRECNLTLRIADGSTRAIKGYGDVSVVFRSGNGPLLLTNVAHVPDLRYHLLSLPTLVKNG 249
            + W  DSGAS HMT ++D + +   YR    ++ I DG   +I   G+   +  + N  L+L+N+ H+P++ Y+LLS+ TLV++ 
Sbjct:  322 QEWFLDSGASAHMTNASDNLSNPSIYRGSE-SVTIGDGRNLSIAQSGNG--ILPTPNRKLILSNLLHIPNISYNLLSISTLVRDN 403          
BLAST of mRNA_M-pyrifera_M_contig1209.4300.1 vs. uniprot
Match: A0A1Y3MZD1_PIRSE (Uncharacterized protein n=1 Tax=Piromyces sp. (strain E2) TaxID=73868 RepID=A0A1Y3MZD1_PIRSE)

HSP 1 Score: 50.4 bits (119), Expect = 2.950e-5
Identity = 28/80 (35.00%), Postives = 44/80 (55.00%), Query Frame = 1
Query:   10 WICDSGASTHMTPSADCMIHYRECNLTLRIADGSTRAIKGYGDVSVVFRSGNGPLLLTNVAHVPDLRYHLLSLPTLVKNG 249
            W  D+GAS H+T + + + +++E  +TL+ A+GST    G G         N  ++L NV +  D+  +LLS   L KNG
Sbjct:  239 WTFDTGASEHITNNKEILTNFKEKEITLKCANGSTCNFDGIGTYEGSINGYN--IILDNVLYSKDVNKNLLSGIKLAKNG 316          
BLAST of mRNA_M-pyrifera_M_contig1209.4300.1 vs. uniprot
Match: A0A0V0HGM7_SOLCH (Putative ovule protein (Fragment) n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0HGM7_SOLCH)

HSP 1 Score: 50.1 bits (118), Expect = 3.460e-5
Identity = 26/84 (30.95%), Postives = 46/84 (54.76%), Query Frame = 1
Query:    4 EAWICDSGASTHMTPSADCM----IHYRECNLTLRIADGSTRAIKGYGDVSVVFRSGNGPLLLTNVAHVPDLRYHLLSLPTLVK 243
            + WI D+GA+ HM  S D +    ++  E +  + + +G T  +   G  S+  RS     +++NV H+PD +Y+LLS+  + K
Sbjct:   30 KVWIVDTGATNHMVSSVDMLNGNTVNKLEVSKPVYLPNGDTTQVSHTGSCSLSERS-----IISNVLHIPDFKYNLLSVSQITK 108          
BLAST of mRNA_M-pyrifera_M_contig1209.4300.1 vs. uniprot
Match: A0A151RRX2_CAJCA (Uncharacterized protein n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RRX2_CAJCA)

HSP 1 Score: 49.3 bits (116), Expect = 5.060e-5
Identity = 27/84 (32.14%), Postives = 45/84 (53.57%), Query Frame = 1
Query:    1 DEAWICDSGASTHMTPSADCMIHYRECNLTLRIADGSTRA-IKGYGDVSVVFRSGNGPLLLTNVAHVPDLRYHLLSLPTLVKNG 249
            D  WI DSGA++H+  S +    Y   + +  +   ST+  ++G G + +     N  + L NV H+P+ R++LLSL TL+   
Sbjct:  120 DNTWIIDSGATSHICCSKNMYNSYSPIHNSNVLLPNSTKVKVEGIGSIRL-----NDDIFLHNVLHIPNFRFNLLSLLTLINEN 198          
BLAST of mRNA_M-pyrifera_M_contig1209.4300.1 vs. uniprot
Match: A0A151T1V6_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T1V6_CAJCA)

HSP 1 Score: 49.3 bits (116), Expect = 7.560e-5
Identity = 27/84 (32.14%), Postives = 45/84 (53.57%), Query Frame = 1
Query:    1 DEAWICDSGASTHMTPSADCMIHYRECNLTLRIADGSTRA-IKGYGDVSVVFRSGNGPLLLTNVAHVPDLRYHLLSLPTLVKNG 249
            D  WI DSGA++H+  S +    Y   + +  +   ST+  ++G G + +     N  + L NV H+P+ R++LLSL TL+   
Sbjct:  310 DNTWIIDSGATSHICCSKNMYNSYSPLHNSNVLLPNSTKVKVEGIGSIRL-----NDDIFLHNVLHIPNFRFNLLSLLTLINEN 388          
BLAST of mRNA_M-pyrifera_M_contig1209.4300.1 vs. uniprot
Match: A0A1S4A801_TOBAC (uncharacterized protein LOC107794761 n=1 Tax=Nicotiana tabacum TaxID=4097 RepID=A0A1S4A801_TOBAC)

HSP 1 Score: 49.3 bits (116), Expect = 7.630e-5
Identity = 28/82 (34.15%), Postives = 45/82 (54.88%), Query Frame = 1
Query:   10 WICDSGASTHMTPSADCMIHYRECNL----TLRIADGSTRAIKGYGDVSVVFRSGNGPLLLTNVAHVPDLRYHLLSLPTLVK 243
            WI DSGAS+HM  S   +++ +  N     T+++  G+  +I   G   +V   G     ++NV H+PD +Y+LLS+  L K
Sbjct:  140 WIVDSGASSHMVHSLSLLVNPKRLNNGKNGTVQLPTGNAASISHIGSTYIV--QGQ---TISNVLHIPDFKYNLLSVSKLTK 216          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1209.4300.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A2A4JRI1_HELVI4.350e-840.00Uncharacterized protein n=1 Tax=Heliothis virescen... [more]
A0A6H5KG88_9PHAE5.220e-735.29CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A2I0V6M5_9ASPA4.680e-635.29Retrovirus-related Pol polyprotein from transposon... [more]
A0A1Y3MZD1_PIRSE2.950e-535.00Uncharacterized protein n=1 Tax=Piromyces sp. (str... [more]
A0A0V0HGM7_SOLCH3.460e-530.95Putative ovule protein (Fragment) n=1 Tax=Solanum ... [more]
A0A151RRX2_CAJCA5.060e-532.14Uncharacterized protein n=1 Tax=Cajanus cajan TaxI... [more]
A0A151T1V6_CAJCA7.560e-532.14Retrovirus-related Pol polyprotein from transposon... [more]
A0A1S4A801_TOBAC7.630e-534.15uncharacterized protein LOC107794761 n=1 Tax=Nicot... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1209contigM-pyrifera_M_contig1209:379..630 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size252
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815728.4021723-CDS-M-pyrifera_M_contig1209:378..6301622815728.4021723-CDS-M-pyrifera_M_contig1209:378..630Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1209 379..630 -
1692277541.563018-CDS-M-pyrifera_M_contig1209:378..6301692277541.563018-CDS-M-pyrifera_M_contig1209:378..630Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1209 379..630 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1209.4300.1prot_M-pyrifera_M_contig1209.4300.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1209 379..630 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1209.4300.1

>prot_M-pyrifera_M_contig1209.4300.1 ID=prot_M-pyrifera_M_contig1209.4300.1|Name=mRNA_M-pyrifera_M_contig1209.4300.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=84bp
DEAWICDSGASTHMTPSADCMIHYRECNLTLRIADGSTRAIKGYGDVSVV
FRSGNGPLLLTNVAHVPDLRYHLLSLPTLVKNGH
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mRNA from alignment at M-pyrifera_M_contig1209:379..630-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1209.4300.1 ID=mRNA_M-pyrifera_M_contig1209.4300.1|Name=mRNA_M-pyrifera_M_contig1209.4300.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=252bp|location=Sequence derived from alignment at M-pyrifera_M_contig1209:379..630- (Macrocystis pyrifera P11B4 male)
GACGAGGCCTGGATATGCGATAGTGGTGCGTCTACTCACATGACGCCCTC CGCAGACTGCATGATACACTATAGAGAATGCAACTTGACTCTCCGAATCG CTGACGGATCCACTCGAGCGATCAAAGGTTACGGTGACGTGAGCGTTGTC TTTCGGTCCGGAAACGGTCCCCTGCTGCTTACGAACGTTGCGCACGTGCC GGATCTCCGCTACCACTTACTTTCCCTGCCCACTCTCGTCAAAAACGGCC AT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1209:379..630-

>mRNA_M-pyrifera_M_contig1209.4300.1 ID=mRNA_M-pyrifera_M_contig1209.4300.1|Name=mRNA_M-pyrifera_M_contig1209.4300.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig1209:379..630- (Macrocystis pyrifera P11B4 male)
GACGAGGCCTGGATATGCGATAGTGGTGCGTCTACTCACATGACGCCCTC
CGCAGACTGCATGATACACTATAGAGAATGCAACTTGACTCTCCGAATCG
CTGACGGATCCACTCGAGCGATCAAAGGTTACGGTGACGTGAGCGTTGTC
TTTCGGTCCGGAAACGGTCCCCTGCTGCTTACGAACGTTGCGCACGTGCC
GGATCTCCGCTACCACTTACTTTCCCTGCCCACTCTCGTCAAAAACGGCC
ATGACGAGGCCTGGATATGCGATAGTGGTGCGTCTACTCACATGACGCCC
TCCGCAGACTGCATGATACACTATAGAGAATGCAACTTGACTCTCCGAAT
CGCTGACGGATCCACTCGAGCGATCAAAGGTTACGGTGACGTGAGCGTTG
TCTTTCGGTCCGGAAACGGTCCCCTGCTGCTTACGAACGTTGCGCACGTG
CCGGATCTCCGCTACCACTTACTTTCCCTGCCCACTCTCGTCAAAAACGG
CCAT
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