mRNA_M-pyrifera_M_contig12085.4293.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12085.4293.1
Unique NamemRNA_M-pyrifera_M_contig12085.4293.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12085.4293.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12085contigM-pyrifera_M_contig12085:5540..6013 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size475
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815727.978587-CDS-M-pyrifera_M_contig12085:5539..58421622815727.978587-CDS-M-pyrifera_M_contig12085:5539..5842Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12085 5540..5842 +
1692277541.356693-CDS-M-pyrifera_M_contig12085:5539..58421692277541.356693-CDS-M-pyrifera_M_contig12085:5539..5842Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12085 5540..5842 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815727.9946816-UTR-M-pyrifera_M_contig12085:5842..60131622815727.9946816-UTR-M-pyrifera_M_contig12085:5842..6013Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12085 5843..6013 +
1692277541.3671386-UTR-M-pyrifera_M_contig12085:5842..60131692277541.3671386-UTR-M-pyrifera_M_contig12085:5842..6013Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12085 5843..6013 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12085.4293.1prot_M-pyrifera_M_contig12085.4293.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12085 5540..5842 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12085.4293.1

>prot_M-pyrifera_M_contig12085.4293.1 ID=prot_M-pyrifera_M_contig12085.4293.1|Name=mRNA_M-pyrifera_M_contig12085.4293.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=101bp
VLLVLHYRTTGEIVNFRSHASSLSIALLGQVLLFYQVYWKHVLGLARRRL
PPPPSTCLLCTTRTYENNPTTSNCCTSLPTVAVYQVPVSAVLRVLVLTCR
*
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mRNA from alignment at M-pyrifera_M_contig12085:5540..6013+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12085.4293.1 ID=mRNA_M-pyrifera_M_contig12085.4293.1|Name=mRNA_M-pyrifera_M_contig12085.4293.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig12085:5540..6013+ (Macrocystis pyrifera P11B4 male)
GTACTACTTGTGCTCCATTATCGAACAACAGGGGAGATCGTCAATTTTCG
CTCTCATGCCTCCTCTCTTTCAATTGCATTGTTGGGTCAGGTTCTGCTCT
TCTACCAGGTATATTGGAAGCATGTCTTGGGTCTCGCTAGGCGTAGGCTA
CCTCCGCCTCCCTCAACGTGCTTACTCTGTACTACAAGAACATACGAAAA
CAATCCTACTACCAGTAACTGCTGTACGTCGTTGCCAACAGTAGCGGTTT
ACCAGGTACCAGTTAGTGCCGTACTGCGAGTCCTGGTTTTAACGTGCCGG
TGAGCACAACGACATACCAGCTCCTTATGCGCTGTAAAATGACCAAAAAA
AAGTACATAGGTACGTACCTGGCGAAGTACCTCTGGGGTTCAAGCAAGCG
TACGTGCGTACATTGTGAGATTGTGTGAGATTTATTAACGAGAAGCTTGG
ACGGAGCCCATACGAAGCAATATA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12085:5540..6013+

>mRNA_M-pyrifera_M_contig12085.4293.1 ID=mRNA_M-pyrifera_M_contig12085.4293.1|Name=mRNA_M-pyrifera_M_contig12085.4293.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=606bp|location=Sequence derived from alignment at M-pyrifera_M_contig12085:5540..6013+ (Macrocystis pyrifera P11B4 male)
GTACTACTTGTGCTCCATTATCGAACAACAGGGGAGATCGTCAATTTTCG
CTCTCATGCCTCCTCTCTTTCAATTGCATTGTTGGGTCAGGTTCTGCTCT
TCTACCAGGTATATTGGAAGCATGTCTTGGGTCTCGCTAGGCGTAGGCTA
CCTCCGCCTCCCTCAACGTGCTTACTCTGTACTACAAGAACATACGAAAA
CAATCCTACTACCAGTAACTGCTGTACGTCGTTGCCAACAGTAGCGGTTT
ACCAGGTACCAGTTAGTGCCGTACTGCGAGTCCTGGTTTTAACGTGCCGG
TGAGTACTACTTGTGCTCCATTATCGAACAACAGGGGAGATCGTCAATTT
TCGCTCTCATGCCTCCTCTCTTTCAATTGCATTGTTGGGTCAGGTTCTGC
TCTTCTACCAGGTATATTGGAAGCATGTCTTGGGTCTCGCTAGGCGTAGG
CTACCTCCGCCTCCCTCAACGTGCTTACTCTGTACTACAAGAACATACGA
AAACAATCCTACTACCAGTAACTGCTGTACGTCGTTGCCAACAGTAGCGG
TTTACCAGGTACCAGTTAGTGCCGTACTGCGAGTCCTGGTTTTAACGTGC
CGGTGA
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