mRNA_M-pyrifera_M_contig120839.4290.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120839.4290.1
Unique NamemRNA_M-pyrifera_M_contig120839.4290.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig120839.4290.1 vs. uniprot
Match: A0A2D6U7K9_9ACTN (Translation initiation factor IF-3 n=8 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D6U7K9_9ACTN)

HSP 1 Score: 174 bits (441), Expect = 7.210e-53
Identity = 85/105 (80.95%), Postives = 96/105 (91.43%), Query Frame = 1 
Query:   76 IAPQNDEPRINDRIRAREVRLIGHDGEQIGVKTLPEAQNIARASGLDLVEVAPEAKPPVCKVMDYSKFKYEANQRAKESKKKSSNLSVKEMKYRPKIGPGDFDTK 390
            +AP ++EPRINDRIRAREVRL+G DGEQIG+K LP A NIARA+GLDLVEVA  A PPVC++MDY KFKYEA+QRAKES+KKSSNL+VKEMKYRPKIGPGDFDTK
Sbjct:    1 MAPPSNEPRINDRIRAREVRLVGQDGEQIGIKPLPXALNIARAAGLDLVEVADRANPPVCRIMDYGKFKYEADQRAKESRKKSSNLTVKEMKYRPKIGPGDFDTK 105
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BLAST of mRNA_M-pyrifera_M_contig120839.4290.1 vs. uniprot
Match: A0A7X5WT69_9ACTN (Translation initiation factor IF-3 n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X5WT69_9ACTN)

HSP 1 Score: 163 bits (412), Expect = 1.220e-48
Identity = 80/96 (83.33%), Postives = 89/96 (92.71%), Query Frame = 1 
Query:  103 INDRIRAREVRLIGHDGEQIGVKTLPEAQNIARASGLDLVEVAPEAKPPVCKVMDYSKFKYEANQRAKESKKKSSNLSVKEMKYRPKIGPGDFDTK 390
            +NDRIRAREVRL+G DGEQIG+K LPEA NIARASGLDLVEVA +A PPVC++MDY K+KYEA QRAKES+KKSSNL+VKEMKYRPKIGPGDFDTK
Sbjct:    1 MNDRIRAREVRLVGPDGEQIGIKPLPEALNIARASGLDLVEVAEQASPPVCRIMDYGKYKYEAAQRAKESRKKSSNLTVKEMKYRPKIGPGDFDTK 96
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BLAST of mRNA_M-pyrifera_M_contig120839.4290.1 vs. uniprot
Match: A0A2E9XA01_9ACTN (Translation initiation factor IF-3 n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A2E9XA01_9ACTN)

HSP 1 Score: 152 bits (384), Expect = 2.210e-44
Identity = 75/103 (72.82%), Postives = 86/103 (83.50%), Query Frame = 1 
Query:   82 PQNDEPRINDRIRAREVRLIGHDGEQIGVKTLPEAQNIARASGLDLVEVAPEAKPPVCKVMDYSKFKYEANQRAKESKKKSSNLSVKEMKYRPKIGPGDFDTK 390
            P+  E RIND IRAREVRL+  DGEQIG+K LPEA NIAR   LDLVEVA +A PPVC++MDY KFKYE +QRAKES+KKS ++S+KEMKYRPKIG GDFDTK
Sbjct:    4 PEEGEARINDEIRAREVRLVAPDGEQIGIKPLPEALNIARGLDLDLVEVAAQANPPVCRIMDYGKFKYETSQRAKESRKKSGSVSLKEMKYRPKIGQGDFDTK 106
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BLAST of mRNA_M-pyrifera_M_contig120839.4290.1 vs. uniprot
Match: A0A6L7JQH4_9ACTN (Translation initiation factor IF-3 n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6L7JQH4_9ACTN)

HSP 1 Score: 152 bits (384), Expect = 2.890e-44
Identity = 72/99 (72.73%), Postives = 88/99 (88.89%), Query Frame = 1 
Query:   94 EPRINDRIRAREVRLIGHDGEQIGVKTLPEAQNIARASGLDLVEVAPEAKPPVCKVMDYSKFKYEANQRAKESKKKSSNLSVKEMKYRPKIGPGDFDTK 390
            EPRINDRIRAREVRL+G DG+QIG++ LPEA ++AR +GLDLVEVA +  PPVC++MDY K+KYEA QRAKES++ S+N+ VKEMKYRPKIGPGDF+TK
Sbjct:    7 EPRINDRIRAREVRLVGQDGQQIGIRLLPEALDMAREAGLDLVEVADKENPPVCRIMDYGKYKYEAAQRAKESRRNSTNIIVKEMKYRPKIGPGDFETK 105
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BLAST of mRNA_M-pyrifera_M_contig120839.4290.1 vs. uniprot
Match: A0A2E7XBA5_9ACTN (Translation initiation factor IF-3 n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E7XBA5_9ACTN)

HSP 1 Score: 154 bits (388), Expect = 4.570e-44
Identity = 84/132 (63.64%), Postives = 103/132 (78.03%), Query Frame = 1 
Query:    1 FSARKRGGGYHANQRR-FRAHKDFRAIA-PQNDEPRINDRIRAREVRLIGHDGEQIGVKTLPEAQNIARASGLDLVEVAPEAKPPVCKVMDYSKFKYEANQRAKESKKKSSNLSVKEMKYRPKIGPGDFDTK 390
            F    RGG   ++Q R  R  ++ RAIA P N EPRINDRIRAREVRL+G +G+QIGV+ LPEA  +A    LDLVEVA +A PPVC++MDY K+KYE +QRAKES+KK++++ VKEMKYRPKIGPGDFDTK
Sbjct:    2 FDIGSRGGVPISHQERNLRDAQERRAIATPANQEPRINDRIRAREVRLVGPEGDQIGVRPLPEAIAMAHDLDLDLVEVADKADPPVCRIMDYGKYKYEQSQRAKESRKKATHILVKEMKYRPKIGPGDFDTK 133
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BLAST of mRNA_M-pyrifera_M_contig120839.4290.1 vs. uniprot
Match: A0A2E8LII8_9ACTN (Translation initiation factor IF-3 (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E8LII8_9ACTN)

HSP 1 Score: 151 bits (382), Expect = 5.970e-44
Identity = 73/103 (70.87%), Postives = 89/103 (86.41%), Query Frame = 1 
Query:   82 PQNDEPRINDRIRAREVRLIGHDGEQIGVKTLPEAQNIARASGLDLVEVAPEAKPPVCKVMDYSKFKYEANQRAKESKKKSSNLSVKEMKYRPKIGPGDFDTK 390
            P N EPR+NDRIRAREVRL+G DG+QIG++ LPEA  +A   GLDLVEVA +A PPVC++MDY K+KYE +QRAKES+KK++++SVKEMKYRPKIGPGDF TK
Sbjct:    4 PANQEPRVNDRIRAREVRLVGPDGDQIGIRPLPEAIAMAGDLGLDLVEVADKADPPVCRIMDYGKYKYEQSQRAKESRKKATHISVKEMKYRPKIGPGDFATK 106
[Close]
BLAST of mRNA_M-pyrifera_M_contig120839.4290.1 vs. uniprot
Match: A0A2N5JYK6_9ACTN (Translation initiation factor IF-3 n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A2N5JYK6_9ACTN)

HSP 1 Score: 151 bits (382), Expect = 1.090e-43
Identity = 74/99 (74.75%), Postives = 87/99 (87.88%), Query Frame = 1 
Query:   94 EPRINDRIRAREVRLIGHDGEQIGVKTLPEAQNIARASGLDLVEVAPEAKPPVCKVMDYSKFKYEANQRAKESKKKSSNLSVKEMKYRPKIGPGDFDTK 390
            E RINDRIRAREVRLIG DG Q+G+K LPEA  IAR + LDLVEVAP A PPVC++MDYS+FKYE  Q+AKES++K++N+SVKEMKYRPKIGPGDF+TK
Sbjct:    8 ETRINDRIRAREVRLIGADGAQLGIKALPEALVIARDADLDLVEVAPMANPPVCRIMDYSRFKYETEQKAKESRRKTTNISVKEMKYRPKIGPGDFETK 106
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BLAST of mRNA_M-pyrifera_M_contig120839.4290.1 vs. uniprot
Match: A0A3M2GHN5_ACTSX (Translation initiation factor IF-3 n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2GHN5_ACTSX)

HSP 1 Score: 149 bits (376), Expect = 3.400e-43
Identity = 74/96 (77.08%), Postives = 87/96 (90.62%), Query Frame = 1 
Query:  103 INDRIRAREVRLIGHDGEQIGVKTLPEAQNIARASGLDLVEVAPEAKPPVCKVMDYSKFKYEANQRAKESKKKSSNLSVKEMKYRPKIGPGDFDTK 390
            +NDRIRAREVRLIG DG+QIGVK LPEA  +ARA+GLDLVEVA +A PPVC++MDY K+KYEA QRAKES++K+S++SVKEMKYRPKIG GDFDTK
Sbjct:    1 MNDRIRAREVRLIGVDGQQIGVKPLPEALAMARAAGLDLVEVADKANPPVCRIMDYGKYKYEAAQRAKESRRKASHVSVKEMKYRPKIGQGDFDTK 96
[Close]
BLAST of mRNA_M-pyrifera_M_contig120839.4290.1 vs. uniprot
Match: A0A349BA35_9ACTN (Translation initiation factor IF-3 n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A349BA35_9ACTN)

HSP 1 Score: 149 bits (376), Expect = 3.720e-43
Identity = 73/96 (76.04%), Postives = 84/96 (87.50%), Query Frame = 1 
Query:  103 INDRIRAREVRLIGHDGEQIGVKTLPEAQNIARASGLDLVEVAPEAKPPVCKVMDYSKFKYEANQRAKESKKKSSNLSVKEMKYRPKIGPGDFDTK 390
            +NDRIRAREVRL+G DGEQIG+K LPEA  IAR   LDLVEVA +A PPVC++MDY K+KYEA QRAKES++KSS+ S+KEMKYRPKIGPGDFDTK
Sbjct:    1 MNDRIRAREVRLVGADGEQIGIKPLPEALAIARQQDLDLVEVADKANPPVCRIMDYGKYKYEAAQRAKESRRKSSSASIKEMKYRPKIGPGDFDTK 96
[Close]
BLAST of mRNA_M-pyrifera_M_contig120839.4290.1 vs. uniprot
Match: A0A7K0WR75_9ACTN (Translation initiation factor IF-3 n=3 Tax=root TaxID=1 RepID=A0A7K0WR75_9ACTN)

HSP 1 Score: 152 bits (383), Expect = 3.730e-43
Identity = 74/104 (71.15%), Postives = 91/104 (87.50%), Query Frame = 1 
Query:   79 APQNDEPRINDRIRAREVRLIGHDGEQIGVKTLPEAQNIARASGLDLVEVAPEAKPPVCKVMDYSKFKYEANQRAKESKKKSSNLSVKEMKYRPKIGPGDFDTK 390
            A   DE R NDRIRAREVRLI  DG+Q+G+K+LPEA +IAR+  LDLVEVAPEA+PPVC++M+++KFKYEA QRAKES+KK++N+ VKEMKYRPKIG GDF+TK
Sbjct:    3 ASPGDETRTNDRIRAREVRLIDPDGQQLGIKSLPEALSIARSMDLDLVEVAPEARPPVCRIMNFTKFKYEAQQRAKESRKKATNIIVKEMKYRPKIGSGDFETK 106
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120839.4290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D6U7K9_9ACTN7.210e-5380.95Translation initiation factor IF-3 n=8 Tax=Acidimi... [more]
A0A7X5WT69_9ACTN1.220e-4883.33Translation initiation factor IF-3 n=1 Tax=Actinom... [more]
A0A2E9XA01_9ACTN2.210e-4472.82Translation initiation factor IF-3 n=2 Tax=Actinob... [more]
A0A6L7JQH4_9ACTN2.890e-4472.73Translation initiation factor IF-3 n=1 Tax=Acidimi... [more]
A0A2E7XBA5_9ACTN4.570e-4463.64Translation initiation factor IF-3 n=2 Tax=Acidimi... [more]
A0A2E8LII8_9ACTN5.970e-4470.87Translation initiation factor IF-3 (Fragment) n=1 ... [more]
A0A2N5JYK6_9ACTN1.090e-4374.75Translation initiation factor IF-3 n=1 Tax=Actinom... [more]
A0A3M2GHN5_ACTSX3.400e-4377.08Translation initiation factor IF-3 n=1 Tax=Actinom... [more]
A0A349BA35_9ACTN3.720e-4376.04Translation initiation factor IF-3 n=1 Tax=Acidimi... [more]
A0A7K0WR75_9ACTN3.730e-4371.15Translation initiation factor IF-3 n=3 Tax=root Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120839contigM-pyrifera_M_contig120839:2..391 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score141.4
Seed ortholog evalue3.1e-31
Seed eggNOG ortholog1313172.YM304_20650
Preferred nameinfC
KEGG koko:K02520
Hectar predicted targeting categoryother localisation
GOsGO:0000049,GO:0001731,GO:0002181,GO:0002183,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006807,GO:0006950,GO:0006996,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009266,GO:0009409,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0016020,GO:0016043,GO:0019222,GO:0019538,GO:0022411,GO:0022607,GO:0022613,GO:0022618,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0032268,GO:0032270,GO:0032790,GO:0032984,GO:0032988,GO:0032991,GO:0034248,GO:0034250,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0043021,GO:0043022,GO:0043024,GO:0043043,GO:0043170,GO:0043254,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0045727,GO:0045948,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065003,GO:0065007,GO:0070992,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0080090,GO:0097159,GO:1901193,GO:1901195,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903008,GO:1904688,GO:1904690,GO:1990856,GO:1990904,GO:2000112,GO:2000765,GO:2000767
EggNOG free text desc.IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
EggNOG OGs2GJGT@201174,4CMZR@84992,COG0290@1,COG0290@2
COG Functional cat.J
Best tax levelAcidimicrobiia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012,ko03029
Exons1
Model size390
Cds size390
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815727.8754127-CDS-M-pyrifera_M_contig120839:1..3911622815727.8754127-CDS-M-pyrifera_M_contig120839:1..391Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120839 2..391 -
1692277541.3053741-CDS-M-pyrifera_M_contig120839:1..3911692277541.3053741-CDS-M-pyrifera_M_contig120839:1..391Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120839 2..391 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120839.4290.1prot_M-pyrifera_M_contig120839.4290.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120839 2..391 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120839.4290.1

>prot_M-pyrifera_M_contig120839.4290.1 ID=prot_M-pyrifera_M_contig120839.4290.1|Name=mRNA_M-pyrifera_M_contig120839.4290.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=130bp
FSARKRGGGYHANQRRFRAHKDFRAIAPQNDEPRINDRIRAREVRLIGHD
GEQIGVKTLPEAQNIARASGLDLVEVAPEAKPPVCKVMDYSKFKYEANQR
AKESKKKSSNLSVKEMKYRPKIGPGDFDTK
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mRNA from alignment at M-pyrifera_M_contig120839:2..391-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120839.4290.1 ID=mRNA_M-pyrifera_M_contig120839.4290.1|Name=mRNA_M-pyrifera_M_contig120839.4290.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=390bp|location=Sequence derived from alignment at M-pyrifera_M_contig120839:2..391- (Macrocystis pyrifera P11B4 male)
TTTTCCGCCCGAAAGCGCGGTGGCGGATACCACGCCAACCAACGGAGGTT
CCGTGCTCACAAGGATTTCAGAGCGATAGCACCGCAAAACGACGAGCCAA
GGATCAATGACCGGATCCGCGCCCGAGAAGTCCGACTCATCGGACACGAC
GGCGAACAAATCGGAGTCAAGACGCTGCCCGAAGCGCAGAACATCGCGCG
GGCGTCAGGACTGGATCTGGTGGAGGTCGCCCCCGAGGCGAAGCCACCGG
TCTGCAAGGTCATGGACTACAGCAAGTTCAAGTACGAGGCCAACCAACGG
GCCAAGGAGTCCAAGAAGAAGTCCTCGAATCTGTCGGTCAAGGAGATGAA
GTACCGGCCCAAGATCGGGCCCGGCGACTTCGACACCAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120839:2..391-

>mRNA_M-pyrifera_M_contig120839.4290.1 ID=mRNA_M-pyrifera_M_contig120839.4290.1|Name=mRNA_M-pyrifera_M_contig120839.4290.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=780bp|location=Sequence derived from alignment at M-pyrifera_M_contig120839:2..391- (Macrocystis pyrifera P11B4 male)
TTTTCCGCCCGAAAGCGCGGTGGCGGATACCACGCCAACCAACGGAGGTT
CCGTGCTCACAAGGATTTCAGAGCGATAGCACCGCAAAACGACGAGCCAA
GGATCAATGACCGGATCCGCGCCCGAGAAGTCCGACTCATCGGACACGAC
GGCGAACAAATCGGAGTCAAGACGCTGCCCGAAGCGCAGAACATCGCGCG
GGCGTCAGGACTGGATCTGGTGGAGGTCGCCCCCGAGGCGAAGCCACCGG
TCTGCAAGGTCATGGACTACAGCAAGTTCAAGTACGAGGCCAACCAACGG
GCCAAGGAGTCCAAGAAGAAGTCCTCGAATCTGTCGGTCAAGGAGATGAA
GTACCGGCCCAAGATCGGGCCCGGCGACTTCGACACCAAGTTTTCCGCCC
GAAAGCGCGGTGGCGGATACCACGCCAACCAACGGAGGTTCCGTGCTCAC
AAGGATTTCAGAGCGATAGCACCGCAAAACGACGAGCCAAGGATCAATGA
CCGGATCCGCGCCCGAGAAGTCCGACTCATCGGACACGACGGCGAACAAA
TCGGAGTCAAGACGCTGCCCGAAGCGCAGAACATCGCGCGGGCGTCAGGA
CTGGATCTGGTGGAGGTCGCCCCCGAGGCGAAGCCACCGGTCTGCAAGGT
CATGGACTACAGCAAGTTCAAGTACGAGGCCAACCAACGGGCCAAGGAGT
CCAAGAAGAAGTCCTCGAATCTGTCGGTCAAGGAGATGAAGTACCGGCCC
AAGATCGGGCCCGGCGACTTCGACACCAAG
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