mRNA_M-pyrifera_M_contig120820.4284.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120820.4284.1
Unique NamemRNA_M-pyrifera_M_contig120820.4284.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig120820.4284.1 vs. uniprot
Match: A0A7Y2NFL5_9ACTN (Helix-turn-helix domain-containing protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7Y2NFL5_9ACTN)

HSP 1 Score: 63.5 bits (153), Expect = 6.160e-12
Identity = 27/48 (56.25%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:   25 IESLAQQIGVSRRTVHRWIIHGIPADQADRAAIAIGTHPACLWPDHWY 168
            +  LA+Q+GV+ RTV RW + G+   QADRAA+A+G HPA +W DHWY
Sbjct:   25 VAQLARQVGVATRTVWRWQLRGLTDTQADRAAVALGLHPANIW-DHWY 71
[Close]
BLAST of mRNA_M-pyrifera_M_contig120820.4284.1 vs. uniprot
Match: A0A346Y4T3_9ACTN (Uncharacterized protein n=1 Tax=Euzebya pacifica TaxID=1608957 RepID=A0A346Y4T3_9ACTN)

HSP 1 Score: 56.6 bits (135), Expect = 9.220e-9
Identity = 22/42 (52.38%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:   31 SLAQQIGVSRRTVHRWIIHGIPADQADRAAIAIGTHPACLWP 156
            +LA+++GV RR VHRW+  G+   +AD AA+A+G HPA +WP
Sbjct:   60 NLARRVGVDRRNVHRWVHDGLSYIRADEAAVALGLHPALVWP 101
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120820.4284.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7Y2NFL5_9ACTN6.160e-1256.25Helix-turn-helix domain-containing protein n=1 Tax... [more]
A0A346Y4T3_9ACTN9.220e-952.38Uncharacterized protein n=1 Tax=Euzebya pacifica T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120820contigM-pyrifera_M_contig120820:198..377 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size180
Cds size180
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815727.671394-CDS-M-pyrifera_M_contig120820:197..3771622815727.671394-CDS-M-pyrifera_M_contig120820:197..377Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120820 198..377 +
1692277541.2308514-CDS-M-pyrifera_M_contig120820:197..3771692277541.2308514-CDS-M-pyrifera_M_contig120820:197..377Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120820 198..377 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120820.4284.1prot_M-pyrifera_M_contig120820.4284.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120820 198..377 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120820.4284.1

>prot_M-pyrifera_M_contig120820.4284.1 ID=prot_M-pyrifera_M_contig120820.4284.1|Name=mRNA_M-pyrifera_M_contig120820.4284.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=60bp
AIEAQASTIESLAQQIGVSRRTVHRWIIHGIPADQADRAAIAIGTHPACL
WPDHWYTLA*
back to top

mRNA from alignment at M-pyrifera_M_contig120820:198..377+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120820.4284.1 ID=mRNA_M-pyrifera_M_contig120820.4284.1|Name=mRNA_M-pyrifera_M_contig120820.4284.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=180bp|location=Sequence derived from alignment at M-pyrifera_M_contig120820:198..377+ (Macrocystis pyrifera P11B4 male)
GCCATCGAGGCCCAAGCCTCCACAATCGAGAGCCTCGCTCAACAGATCGG
CGTCAGCCGCCGCACCGTGCACCGCTGGATCATCCACGGCATCCCCGCAG
ACCAAGCAGACCGGGCCGCCATCGCCATAGGCACACACCCCGCATGCCTC
TGGCCAGACCACTGGTACACGCTCGCCTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig120820:198..377+

>mRNA_M-pyrifera_M_contig120820.4284.1 ID=mRNA_M-pyrifera_M_contig120820.4284.1|Name=mRNA_M-pyrifera_M_contig120820.4284.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig120820:198..377+ (Macrocystis pyrifera P11B4 male)
GCCATCGAGGCCCAAGCCTCCACAATCGAGAGCCTCGCTCAACAGATCGG
CGTCAGCCGCCGCACCGTGCACCGCTGGATCATCCACGGCATCCCCGCAG
ACCAAGCAGACCGGGCCGCCATCGCCATAGGCACACACCCCGCATGCCTC
TGGCCAGACCACTGGTACACGCTCGCCTGAGCCATCGAGGCCCAAGCCTC
CACAATCGAGAGCCTCGCTCAACAGATCGGCGTCAGCCGCCGCACCGTGC
ACCGCTGGATCATCCACGGCATCCCCGCAGACCAAGCAGACCGGGCCGCC
ATCGCCATAGGCACACACCCCGCATGCCTCTGGCCAGACCACTGGTACAC
GCTCGCCTGA
back to top