mRNA_M-pyrifera_M_contig1208.4279.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig1208.4279.1 vs. uniprot
Match: A0A6H5KKG1_9PHAE (VPS13_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKG1_9PHAE) HSP 1 Score: 215 bits (548), Expect = 1.970e-62 Identity = 113/124 (91.13%), Postives = 120/124 (96.77%), Query Frame = 1
Query: 1 VFLALDKSPLLFRPVSLRGVLARPDQIAEQIASNYAMDALLRSLAVVGSLEALGSPTTLLSAWGKGVYDLFAMPIRALPQGPTSTVRATFRGLSSLLRHASAGTLSSVSGVTNALSRNLRSRGG 372
VFLALDKSPLLFRPVSLRGVLARPD+IAEQIASNYA+DALLRSLAVVGSLEALGSPTTLLS WGKGVYDLFAMPI+A+PQGP+ST RATFRG+SSLLRHASAGTLSSVSGV+NALSRNL RGG
Sbjct: 4356 VFLALDKSPLLFRPVSLRGVLARPDEIAEQIASNYAVDALLRSLAVVGSLEALGSPTTLLSEWGKGVYDLFAMPIKAMPQGPSSTFRATFRGVSSLLRHASAGTLSSVSGVSNALSRNLGGRGG 4479
BLAST of mRNA_M-pyrifera_M_contig1208.4279.1 vs. uniprot
Match: A0A7S1G5R3_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G5R3_9STRA) HSP 1 Score: 93.2 bits (230), Expect = 1.040e-19 Identity = 56/124 (45.16%), Postives = 79/124 (63.71%), Query Frame = 1
Query: 4 FLALDKSPLLFRPVSLRGVLARPDQIAEQIASNYAMDALLRSLAVVGSLEALGSPTTLLSAWGKGVYDLFAMPIRALPQ-----GPTSTVRATF-RGLSSLLRHASAGTLSSVSGVTNALSRNL 357
FL++D++PL VSL V A P+++A ++ +NY DA+LRS A+VGSLE LG+PT + G G+ DLFA+P+ A+ G + + F RG SL H + G LSSV+G + ALSRNL
Sbjct: 37 FLSVDEAPLALASVSLDCVRATPERLARELLANYIADAILRSPALVGSLELLGNPTRFMRGLGSGLRDLFALPMLAIRDREKGVGSGAGILTGFARGWGSLAAHVAEGALSSVAGFSAALSRNL 160
BLAST of mRNA_M-pyrifera_M_contig1208.4279.1 vs. uniprot
Match: A0A0H5QH82_9EUKA (VPS13_C domain-containing protein n=2 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5QH82_9EUKA) HSP 1 Score: 92.8 bits (229), Expect = 1.880e-19 Identity = 46/118 (38.98%), Postives = 79/118 (66.95%), Query Frame = 1
Query: 4 FLALDKSPLLFRPVSLRGVLARPDQIAEQIASNYAMDALLRSLAVVGSLEALGSPTTLLSAWGKGVYDLFAMPIRALPQGPTSTVRATFRGLSSLLRHASAGTLSSVSGVTNALSRNL 357
+L P+ V L+ VL+ D++ +++++NY D ++ S + GS++ LG+PT L+S++ KG+ L +P RAL +GP + AT +G+ SLL++ S GTL+SVSG T++L+RN+
Sbjct: 1728 YLGCQSLPVRLSAVELKSVLSSSDRLIKELSANYLADVIMISPLLFGSMDLLGNPTQLISSFSKGIQGLVRLPSRALTRGPRALAWATLQGIGSLLQNISEGTLTSVSGFTHSLARNV 1845
BLAST of mRNA_M-pyrifera_M_contig1208.4279.1 vs. uniprot
Match: R7TEM8_CAPTE (Uncharacterized protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7TEM8_CAPTE) HSP 1 Score: 88.2 bits (217), Expect = 7.920e-18 Identity = 51/119 (42.86%), Postives = 71/119 (59.66%), Query Frame = 1
Query: 1 VFLALDKSPLLFRPVSLRGVLARPDQIAEQIASNYAMDALLRSLAVVGSLEALGSPTTLLSAWGKGVYDLFAMPIRALPQGPTSTVRATFRGLSSLLRHASAGTLSSVSGVTNALSRNL 357
VFLA D +PL F + + Q+A + YA AL R+ VVGSLE LG+PT L +GV DLF MP + L +GP + + RG+ SLLRH S GTL+S++ +++SRN+
Sbjct: 3440 VFLASDNTPLKFGRYE-KSLFTSYQQLARSLTMYYASGALFRAGLVVGSLEILGNPTGLARHLSQGVADLFRMPYQGLTRGPGAFIGGVTRGMGSLLRHVSTGTLNSITSFASSVSRNM 3557
BLAST of mRNA_M-pyrifera_M_contig1208.4279.1 vs. uniprot
Match: H2XP00_CIOIN (Uncharacterized protein n=3 Tax=Ciona intestinalis TaxID=7719 RepID=H2XP00_CIOIN) HSP 1 Score: 86.3 bits (212), Expect = 3.730e-17 Identity = 46/119 (38.66%), Postives = 73/119 (61.34%), Query Frame = 1
Query: 1 VFLALDKSPLLFRPVSLRGVLARPDQIAEQIASNYAMDALLRSLAVVGSLEALGSPTTLLSAWGKGVYDLFAMPIRALPQGPTSTVRATFRGLSSLLRHASAGTLSSVSGVTNALSRNL 357
+++++D+ L F S R V ++ +++ +Y + + + V+GSL+ LG+P T L ++ KGV D MP L GPT+ V RGLSSLLRH S+GTL SV+ + +++SRNL
Sbjct: 3093 LYVSIDRGVLSFSKFSCRDVDTTVAELTQELMRHYFAETVFGAGWVIGSLDLLGNPATALRSYAKGVSDFLLMPYEGLMMGPTAFVGGFTRGLSSLLRHLSSGTLRSVTNIASSISRNL 3211
BLAST of mRNA_M-pyrifera_M_contig1208.4279.1 vs. uniprot
Match: UPI000719AC75 (vacuolar protein sorting-associated protein 13B-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719AC75) HSP 1 Score: 85.5 bits (210), Expect = 6.970e-17 Identity = 50/119 (42.02%), Postives = 69/119 (57.98%), Query Frame = 1
Query: 1 VFLALDKSPLLFRPVSLRGVLARPDQIAEQIASNYAMDALLRSLAVVGSLEALGSPTTLLSAWGKGVYDLFAMPIRALPQGPTSTVRATFRGLSSLLRHASAGTLSSVSGVTNALSRNL 357
+FLA D +PL F R + P +A + +YA A LR+ VVGSL+ LGSPT++L G+ DLF MP GP S + RG +SLLRH SAG ++SV+ ++SRN+
Sbjct: 3698 LFLASDSTPLSFGAFERRDLCTTPWCLANALLRHYAAGAALRAGWVVGSLDLLGSPTSMLREVTSGMADLFRMPYEGATHGPGSFIAGMSRGAASLLRHTSAGAITSVTNFALSVSRNM 3816
BLAST of mRNA_M-pyrifera_M_contig1208.4279.1 vs. uniprot
Match: A0A6P4ZTE8_BRABE (vacuolar protein sorting-associated protein 13B-like n=4 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4ZTE8_BRABE) HSP 1 Score: 85.1 bits (209), Expect = 9.500e-17 Identity = 46/119 (38.66%), Postives = 71/119 (59.66%), Query Frame = 1
Query: 1 VFLALDKSPLLFRPVSLRGVLARPDQIAEQIASNYAMDALLRSLAVVGSLEALGSPTTLLSAWGKGVYDLFAMPIRALPQGPTSTVRATFRGLSSLLRHASAGTLSSVSGVTNALSRNL 357
VF++ D + L F+ S V + + +A +Y AL R+ V+GSL+ LGSP +LL + G+ D F +P L +GP + V +G SSL+RH SAGTL+S+ + N++SRN+
Sbjct: 3550 VFISSDHTRLTFKHFSRTPVFTVSRNLVQDLALHYGSGALFRAGWVLGSLDILGSPASLLGSISSGISDFFRLPYEGLTRGPGAFVSGVTKGASSLVRHVSAGTLTSIVNLANSISRNM 3668
BLAST of mRNA_M-pyrifera_M_contig1208.4279.1 vs. uniprot
Match: C3ZQS8_BRAFL (Uncharacterized protein n=2 Tax=Branchiostoma floridae TaxID=7739 RepID=C3ZQS8_BRAFL) HSP 1 Score: 85.1 bits (209), Expect = 9.510e-17 Identity = 46/119 (38.66%), Postives = 71/119 (59.66%), Query Frame = 1
Query: 1 VFLALDKSPLLFRPVSLRGVLARPDQIAEQIASNYAMDALLRSLAVVGSLEALGSPTTLLSAWGKGVYDLFAMPIRALPQGPTSTVRATFRGLSSLLRHASAGTLSSVSGVTNALSRNL 357
VF++ D + L F+ S V + + +A +Y AL R+ V+GSL+ LGSP +LL + G+ D F +P L +GP + V +G SSL+RH SAGTL+S+ + N++SRN+
Sbjct: 3881 VFISSDHTRLTFKNFSRTPVFTVSRNLVQDLALHYGSGALFRAGWVLGSLDILGSPASLLGSISSGISDFFRLPYEGLTRGPGAFVSGVTKGASSLVRHVSAGTLTSIVNLANSISRNM 3999
BLAST of mRNA_M-pyrifera_M_contig1208.4279.1 vs. uniprot
Match: A0A8B7YAP6_ACAPL (vacuolar protein sorting-associated protein 13B-like isoform X1 n=4 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7YAP6_ACAPL) HSP 1 Score: 84.3 bits (207), Expect = 1.760e-16 Identity = 48/119 (40.34%), Postives = 70/119 (58.82%), Query Frame = 1
Query: 1 VFLALDKSPLLFRPVSLRGVLARPDQIAEQIASNYAMDALLRSLAVVGSLEALGSPTTLLSAWGKGVYDLFAMPIRALPQGPTSTVRATFRGLSSLLRHASAGTLSSVSGVTNALSRNL 357
+F+A D +PL FR + A Q+A+ + +Y AL ++ V+GSLE LG+P LL G G+ D +P L +GP + V G SSLLRH SAGTL+S++ +++SRNL
Sbjct: 2669 LFIAADSTPLSFRQFDSGPMFATTRQLAQALTMHYTSGALFKAGWVLGSLELLGNPAGLLRNVGSGLADSVMLPYEGLTRGPAAFVAGVTSGTSSLLRHLSAGTLTSITKFASSVSRNL 2787
BLAST of mRNA_M-pyrifera_M_contig1208.4279.1 vs. uniprot
Match: UPI00145500BC (LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 13B-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI00145500BC) HSP 1 Score: 80.5 bits (197), Expect = 3.950e-15 Identity = 46/119 (38.66%), Postives = 69/119 (57.98%), Query Frame = 1
Query: 1 VFLALDKSPLLFRPVSLRGVLARPDQIAEQIASNYAMDALLRSLAVVGSLEALGSPTTLLSAWGKGVYDLFAMPIRALPQGPTSTVRATFRGLSSLLRHASAGTLSSVSGVTNALSRNL 357
+F+A+D +PL F V A Q+ + + +Y AL ++ V+GSLE LG+P LL G+ D F +P L +GP + V G SSLL+H SAGTL+S++ +++SRNL
Sbjct: 3681 LFIAVDSTPLSFNQFDSGPVFATTRQLVQALTVHYTSGALFKAGWVLGSLEILGNPAGLLRNVRSGLTDSFMLPYEGLTRGPAAFVAGVTSGTSSLLKHLSAGTLTSITMFASSVSRNL 3799 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1208.4279.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig1208.4279.1 >prot_M-pyrifera_M_contig1208.4279.1 ID=prot_M-pyrifera_M_contig1208.4279.1|Name=mRNA_M-pyrifera_M_contig1208.4279.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=124bp VFLALDKSPLLFRPVSLRGVLARPDQIAEQIASNYAMDALLRSLAVVGSLback to top mRNA from alignment at M-pyrifera_M_contig1208:3451..4530+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig1208.4279.1 ID=mRNA_M-pyrifera_M_contig1208.4279.1|Name=mRNA_M-pyrifera_M_contig1208.4279.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1080bp|location=Sequence derived from alignment at M-pyrifera_M_contig1208:3451..4530+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig1208:3451..4530+ >mRNA_M-pyrifera_M_contig1208.4279.1 ID=mRNA_M-pyrifera_M_contig1208.4279.1|Name=mRNA_M-pyrifera_M_contig1208.4279.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=744bp|location=Sequence derived from alignment at M-pyrifera_M_contig1208:3451..4530+ (Macrocystis pyrifera P11B4 male)back to top |