mRNA_M-pyrifera_M_contig120785.4276.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120785.4276.1
Unique NamemRNA_M-pyrifera_M_contig120785.4276.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig120785.4276.1 vs. uniprot
Match: A0A2E7KD07_9PLAN (VOC domain-containing protein n=4 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KD07_9PLAN)

HSP 1 Score: 340 bits (871), Expect = 4.290e-115
Identity = 173/178 (97.19%), Postives = 176/178 (98.88%), Query Frame = 1
Query:    1 QVPEAVRGETISDAAGPTSKAIDCSSGREQNAQQKWAHRLGQSLTIPANLTSESLDEVALQGSFNAEGTADEVRPFLKQVANCLKPGGTLNLHCLTGDRRVTEVLNLAGPASVVKQVPVLESLLADLEAAGFERISLTTYRSQACFTVGEAELRETRLQERKPEPVSESLVNVVYLGP 534
            QVPEAVRGETI+DAAGPTSKAIDCSSGREQNAQQKWAHRLGQSLTIPA+LTSESLDEVALQGSFNAEGTADEVRPFLKQVANCLKPGGTLNLHCLTGDRRVTEVLNLAGPASVVKQVPVLESLLADLEAAGFERISLTTYRS+ACFTVGEAELRETRLQ  KPEPVSESLVNVVYLGP
Sbjct:  137 QVPEAVRGETIADAAGPTSKAIDCSSGREQNAQQKWAHRLGQSLTIPADLTSESLDEVALQGSFNAEGTADEVRPFLKQVANCLKPGGTLNLHCLTGDRRVTEVLNLAGPASVVKQVPVLESLLADLEAAGFERISLTTYRSRACFTVGEAELRETRLQAHKPEPVSESLVNVVYLGP 314          
BLAST of mRNA_M-pyrifera_M_contig120785.4276.1 vs. uniprot
Match: A0A5C1A8B7_9BACT (Methyltransferase domain-containing protein n=1 Tax=Limnoglobus roseus TaxID=2598579 RepID=A0A5C1A8B7_9BACT)

HSP 1 Score: 95.1 bits (235), Expect = 4.010e-20
Identity = 60/147 (40.82%), Postives = 76/147 (51.70%), Query Frame = 1
Query:   94 AQQKWAHRLGQSLTIPANLTSESLDEVALQGSFNAEGTADEVRPFLKQVANCLKPGGTLNLHCLTGDRRVTEVLNLAGPASVVKQVPVLESLLADLEAAGFERISLTTYRSQACFTVGEAELRETRLQERKPEPVSESLVNVVYLGP 534
            A+  W HRL   L      +  +LDEV L+G+FNA   AD V   + +    LKPGG L++H L GD+       L G AS+V+ VPV    LA L  AGF  +         CF V   ELRE RL   KP P +++ V VVY GP
Sbjct:  147 AEAVWQHRLTDPLPASIPHSDGTLDEVLLEGTFNAALPADRVAALVAEAYRALKPGGKLSVHGLVGDQPFPGPPKLPGMASLVQYVPVETEPLAALHHAGFGGLFYEKLGDIHCFRVNGVELRELRLHGWKPGPATDA-VTVVYKGP 292          
BLAST of mRNA_M-pyrifera_M_contig120785.4276.1 vs. uniprot
Match: A0A4R7RTL4_9BACT (Glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein n=1 Tax=Prosthecobacter fusiformis TaxID=48464 RepID=A0A4R7RTL4_9BACT)

HSP 1 Score: 94.0 bits (232), Expect = 4.330e-19
Identity = 54/145 (37.24%), Postives = 78/145 (53.79%), Query Frame = 1
Query:  106 WAHRLGQSLTIPANLTSESLDEVALQGSFNAEGTADEVRPFLKQVANCLKPGGTLNLHCLTGDRRVT-EVLNLAGPASVVKQVPVLESLLADLEAAGFERISLTTYRSQACFTVGEAELRETRLQERKPE-PVSESLVNVVYLGP 534
            W H+LG+ +T+P  + + SL EV L+G+FN    + ++   L+ V   L+PGG + LH L  DR +T    +L GPA+ V+ VP   SL+  L+AAGF     T    +  F      LRE  ++  KP    S+    VVYLGP
Sbjct:  159 WTHQLGEEVTLPLAMETNSLQEVVLEGTFNMAPASLDLPALLRDVLRALRPGGKVTLHGLAADRPLTGPCSSLPGPAAAVQHVPDFPSLITQLQAAGFASARFTKLSEKGYFEAEGIPLREVLIEAVKPGFRSSKKDQTVVYLGP 303          
BLAST of mRNA_M-pyrifera_M_contig120785.4276.1 vs. uniprot
Match: A0A1C3EHE3_9PLAN (VOC domain-containing protein n=1 Tax=Planctopirus hydrillae TaxID=1841610 RepID=A0A1C3EHE3_9PLAN)

HSP 1 Score: 92.8 bits (229), Expect = 5.250e-19
Identity = 50/108 (46.30%), Postives = 67/108 (62.04%), Query Frame = 1
Query:  169 EVALQGSFNAEGTADEVRPFLKQVANCLKPGGTLNLHCLTGDRRVTEV-LNLAGPASVVKQVPVLESLLADLEAAGFERISLTTYRSQACFTVGEAELRETRLQERKP 489
            ++ L+G+FN     +++  +L+     L P G L +H LT D  + E  LNL GPA+ VK VPVLE LL  L+ AGF  ISL T+RSQ CF V  A+LRET +  R+P
Sbjct:  208 QIHLRGTFNEAHAEEKIATWLQTSRKQLAPHGELKIHVLTTDSPIEESDLNLPGPAAYVKHVPVLEELLGQLQQAGFVHISLETFRSQPCFVVHHAQLRETLIIARQP 315          
BLAST of mRNA_M-pyrifera_M_contig120785.4276.1 vs. uniprot
Match: A0A6P2DLQ9_9BACT (VOC domain-containing protein n=2 Tax=Gemmata TaxID=113 RepID=A0A6P2DLQ9_9BACT)

HSP 1 Score: 84.3 bits (207), Expect = 3.870e-16
Identity = 56/150 (37.33%), Postives = 71/150 (47.33%), Query Frame = 1
Query:   85 EQNAQQKWAHRLGQSLTIPANLTSESLDEVALQGSFNAEGTADEVRPFLKQVANCLKPGGTLNLHCLTGDRRVTEVLNLAGPASVVKQVPVLESLLADLEAAGFERISLTTYRSQACFTVGEAELRETRLQERKPEPVSESLVNVVYLGP 534
            EQ AQ  W HRL   +         SLDEV L+G+FNA  + + +   L      L+PGG L++H L  D+       L G AS+V++VPV    L  L  AGF  +         CFTV   ELRE RL   K    +     VVY GP
Sbjct:  146 EQPAQAVWQHRLTDPVPDRIPHKDNSLDEVLLEGTFNALVSPERLAKLLVDAHRVLRPGGKLSIHGLVSDKPFPGTPKLPGLASMVQRVPVETEPLGLLLRAGFGGLFYEKLGDIHCFTVNGVELRELRLHGWKAGTAAPGPCAVVYKGP 295          
BLAST of mRNA_M-pyrifera_M_contig120785.4276.1 vs. uniprot
Match: UPI0002F11EEF (VOC family protein n=1 Tax=Zavarzinella formosa TaxID=360055 RepID=UPI0002F11EEF)

HSP 1 Score: 83.2 bits (204), Expect = 1.030e-15
Identity = 53/143 (37.06%), Postives = 72/143 (50.35%), Query Frame = 1
Query:  106 WAHRLGQSLTIPANLTSESLDEVALQGSFNAEGTADEVRPFLKQVANCLKPGGTLNLHCLTGDRRVTEVLNLAGPASVVKQVPVLESLLADLEAAGFERISLTTYRSQACFTVGEAELRETRLQERKPEPVSESLVNVVYLGP 534
            W HR+   +        +SLDEV L+G+FNA      +   L ++   LKPGG + +H L GD+       L G AS+V++VPV    L  L AAGF  ++        CF V   ELRE RL  RK    + S + V+Y GP
Sbjct:  155 WQHRITDPIPAVIPHGDDSLDEVILEGTFNAILPEGALTRLLGEIRRTLKPGGRIAVHGLVGDKPFPGAPKLPGMASLVRRVPVETEALEMLLAAGFGSLAFDKLGDIHCFRVNGVELREMRLAGRKAVKETASAL-VLYKGP 296          
BLAST of mRNA_M-pyrifera_M_contig120785.4276.1 vs. uniprot
Match: A0A225DSG9_9BACT (Lactoylglutathione lyase n=1 Tax=Fimbriiglobus ruber TaxID=1908690 RepID=A0A225DSG9_9BACT)

HSP 1 Score: 80.5 bits (197), Expect = 9.790e-15
Identity = 55/143 (38.46%), Postives = 70/143 (48.95%), Query Frame = 1
Query:  106 WAHRLGQSLTIPANLTSESLDEVALQGSFNAEGTADEVRPFLKQVANCLKPGGTLNLHCLTGDRRVTEVLNLAGPASVVKQVPVLESLLADLEAAGFERISLTTYRSQACFTVGEAELRETRLQERKPEPVSESLVNVVYLGP 534
            W HR+   L      +  SLDEV L+G+FNA      +   L  V   LKPGG L++H L GD+       L G AS+V++VPV    L  L  AGF  +         CF+V   ELRE RL   KP   + S   V+Y GP
Sbjct:  153 WQHRITDPLPERIPHSDGSLDEVILEGTFNALIPCWRLSQLLADVHRSLKPGGKLSVHGLVGDKPFPGEPKLPGIASLVRRVPVETEPLGQLLRAGFGGLFYEKLGDIHCFSVNGVELRELRLHGWKPGAAAGSCP-VMYKGP 294          
BLAST of mRNA_M-pyrifera_M_contig120785.4276.1 vs. uniprot
Match: A0A6M5Z5X7_9BACT (Cadmium-induced protein CadI n=1 Tax=Frigoriglobus tundricola TaxID=2774151 RepID=A0A6M5Z5X7_9BACT)

HSP 1 Score: 79.0 bits (193), Expect = 3.570e-14
Identity = 48/143 (33.57%), Postives = 67/143 (46.85%), Query Frame = 1
Query:  106 WAHRLGQSLTIPANLTSESLDEVALQGSFNAEGTADEVRPFLKQVANCLKPGGTLNLHCLTGDRRVTEVLNLAGPASVVKQVPVLESLLADLEAAGFERISLTTYRSQACFTVGEAELRETRLQERKPEPVSESLVNVVYLGP 534
            W HR+   L         +LDEV L+G+FNA  + + +   L      LKPGG +++H L GD+       L G A++V++VPV    L  L  AGF  +         CF V   +LRE RL   K    +     +VY GP
Sbjct:  154 WQHRITDPLPDRVPHADATLDEVLLEGTFNALSSPERLAKLLADAHRALKPGGKVSVHGLVGDKPFPGTPKLPGMAALVQRVPVETEPLCALLRAGFGGLFYEKLGDIHCFRVNGVDLRELRLHGWKAPAAAPRSCAIVYKGP 296          
BLAST of mRNA_M-pyrifera_M_contig120785.4276.1 vs. uniprot
Match: A0A6P2DN37_9BACT (VOC domain-containing protein n=2 Tax=Gemmata TaxID=113 RepID=A0A6P2DN37_9BACT)

HSP 1 Score: 74.7 bits (182), Expect = 1.370e-12
Identity = 56/160 (35.00%), Postives = 74/160 (46.25%), Query Frame = 1
Query:   67 DCSSGREQNAQQKWAHRLGQSLTIPANLTSESLDEVALQGSFNAEGTADEVRPFLKQVANCLKPGGTLNLHCLTGDRRVTEVL-NLAGPASVVKQVPVLESLLADLEAAGFERISLTTYRSQACFTVGEAELRETRLQERKP---EPVSESLVNVVYLGP 534
            D  SG +   +  W H +   L         SLDEV L G+FNAE T  +    LK+VA  LKPGG +  H L GD+        L G A++V  VP     +  L  AGF    +  +  +A F     ELRE +    KP   + VSE+   V+Y GP
Sbjct:  148 DAESGAKAQPEAVWEHFVTNGLPERIPHKDNSLDEVRLVGTFNAELTDAQRATLLKEVARVLKPGGKILTHGLMGDKPFPGAQPKLPGLAAMVAYVPAQTEPINVLRRAGFVGAQVVKFTEKAWFVADGVELREVKFVAWKPASPKNVSETK-QVLYKGP 306          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120785.4276.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A2E7KD07_9PLAN4.290e-11597.19VOC domain-containing protein n=4 Tax=Gimesia TaxI... [more]
A0A5C1A8B7_9BACT4.010e-2040.82Methyltransferase domain-containing protein n=1 Ta... [more]
A0A4R7RTL4_9BACT4.330e-1937.24Glyoxalase/bleomycin resistance protein/dioxygenas... [more]
A0A1C3EHE3_9PLAN5.250e-1946.30VOC domain-containing protein n=1 Tax=Planctopirus... [more]
A0A6P2DLQ9_9BACT3.870e-1637.33VOC domain-containing protein n=2 Tax=Gemmata TaxI... [more]
UPI0002F11EEF1.030e-1537.06VOC family protein n=1 Tax=Zavarzinella formosa Ta... [more]
A0A225DSG9_9BACT9.790e-1538.46Lactoylglutathione lyase n=1 Tax=Fimbriiglobus rub... [more]
A0A6M5Z5X7_9BACT3.570e-1433.57Cadmium-induced protein CadI n=1 Tax=Frigoriglobus... [more]
A0A6P2DN37_9BACT1.370e-1235.00VOC domain-containing protein n=2 Tax=Gemmata TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120785contigM-pyrifera_M_contig120785:2..535 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Glyoxalase-like domain
EggNOG OGs2J2FE@203682,COG0346@1,COG0346@2
COG Functional cat.E
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size534
Cds size534
Seed ortholog score104.4
Seed ortholog evalue5.7e-20
Seed eggNOG ortholog1123242.JH636435_gene843
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815727.2315192-CDS-M-pyrifera_M_contig120785:1..5351622815727.2315192-CDS-M-pyrifera_M_contig120785:1..535Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120785 2..535 +
1692277540.9656732-CDS-M-pyrifera_M_contig120785:1..5351692277540.9656732-CDS-M-pyrifera_M_contig120785:1..535Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120785 2..535 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120785.4276.1prot_M-pyrifera_M_contig120785.4276.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120785 2..535 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120785.4276.1

>prot_M-pyrifera_M_contig120785.4276.1 ID=prot_M-pyrifera_M_contig120785.4276.1|Name=mRNA_M-pyrifera_M_contig120785.4276.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=178bp
QVPEAVRGETISDAAGPTSKAIDCSSGREQNAQQKWAHRLGQSLTIPANL
TSESLDEVALQGSFNAEGTADEVRPFLKQVANCLKPGGTLNLHCLTGDRR
VTEVLNLAGPASVVKQVPVLESLLADLEAAGFERISLTTYRSQACFTVGE
AELRETRLQERKPEPVSESLVNVVYLGP
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mRNA from alignment at M-pyrifera_M_contig120785:2..535+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120785.4276.1 ID=mRNA_M-pyrifera_M_contig120785.4276.1|Name=mRNA_M-pyrifera_M_contig120785.4276.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=534bp|location=Sequence derived from alignment at M-pyrifera_M_contig120785:2..535+ (Macrocystis pyrifera P11B4 male)
CAGGTGCCGGAAGCGGTGCGCGGGGAAACGATATCTGATGCTGCTGGACC AACTTCCAAGGCAATTGACTGTTCTTCAGGACGGGAGCAGAACGCACAAC AGAAGTGGGCGCATCGTCTGGGACAATCCCTGACAATCCCTGCCAATTTA ACTTCTGAGTCTCTGGACGAAGTCGCCTTGCAGGGAAGCTTCAACGCAGA GGGGACCGCTGACGAGGTGCGACCGTTTCTGAAACAGGTTGCGAACTGTC TGAAACCGGGAGGGACACTCAACCTGCATTGTCTGACTGGGGACCGGCGG GTGACTGAAGTACTTAACCTCGCGGGGCCTGCGAGTGTGGTGAAGCAGGT TCCCGTTCTGGAGTCTCTGCTCGCAGATCTCGAAGCGGCGGGCTTTGAGA GGATCAGCCTGACGACATATCGCAGCCAGGCCTGTTTTACAGTAGGGGAG GCCGAGCTGCGTGAGACCAGGTTGCAGGAGCGCAAGCCGGAACCAGTCAG TGAATCGCTTGTTAATGTGGTTTATCTGGGGCCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120785:2..535+

>mRNA_M-pyrifera_M_contig120785.4276.1 ID=mRNA_M-pyrifera_M_contig120785.4276.1|Name=mRNA_M-pyrifera_M_contig120785.4276.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1068bp|location=Sequence derived from alignment at M-pyrifera_M_contig120785:2..535+ (Macrocystis pyrifera P11B4 male)
CAGGTGCCGGAAGCGGTGCGCGGGGAAACGATATCTGATGCTGCTGGACC
AACTTCCAAGGCAATTGACTGTTCTTCAGGACGGGAGCAGAACGCACAAC
AGAAGTGGGCGCATCGTCTGGGACAATCCCTGACAATCCCTGCCAATTTA
ACTTCTGAGTCTCTGGACGAAGTCGCCTTGCAGGGAAGCTTCAACGCAGA
GGGGACCGCTGACGAGGTGCGACCGTTTCTGAAACAGGTTGCGAACTGTC
TGAAACCGGGAGGGACACTCAACCTGCATTGTCTGACTGGGGACCGGCGG
GTGACTGAAGTACTTAACCTCGCGGGGCCTGCGAGTGTGGTGAAGCAGGT
TCCCGTTCTGGAGTCTCTGCTCGCAGATCTCGAAGCGGCGGGCTTTGAGA
GGATCAGCCTGACGACATATCGCAGCCAGGCCTGTTTTACAGTAGGGGAG
GCCGAGCTGCGTGAGACCAGGTTGCAGGAGCGCAAGCCGGAACCAGTCAG
TGAATCGCTTGTTAATGTGGTTTATCTGGGGCCCCAGGTGCCGGAAGCGG
TGCGCGGGGAAACGATATCTGATGCTGCTGGACCAACTTCCAAGGCAATT
GACTGTTCTTCAGGACGGGAGCAGAACGCACAACAGAAGTGGGCGCATCG
TCTGGGACAATCCCTGACAATCCCTGCCAATTTAACTTCTGAGTCTCTGG
ACGAAGTCGCCTTGCAGGGAAGCTTCAACGCAGAGGGGACCGCTGACGAG
GTGCGACCGTTTCTGAAACAGGTTGCGAACTGTCTGAAACCGGGAGGGAC
ACTCAACCTGCATTGTCTGACTGGGGACCGGCGGGTGACTGAAGTACTTA
ACCTCGCGGGGCCTGCGAGTGTGGTGAAGCAGGTTCCCGTTCTGGAGTCT
CTGCTCGCAGATCTCGAAGCGGCGGGCTTTGAGAGGATCAGCCTGACGAC
ATATCGCAGCCAGGCCTGTTTTACAGTAGGGGAGGCCGAGCTGCGTGAGA
CCAGGTTGCAGGAGCGCAAGCCGGAACCAGTCAGTGAATCGCTTGTTAAT
GTGGTTTATCTGGGGCCC
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