mRNA_M-pyrifera_M_contig120737.4268.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120737.4268.1
Unique NamemRNA_M-pyrifera_M_contig120737.4268.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig120737.4268.1 vs. uniprot
Match: UPI001E4B4774 (glycoside hydrolase n=1 Tax=Propioniciclava soli TaxID=2775081 RepID=UPI001E4B4774)

HSP 1 Score: 60.8 bits (146), Expect = 7.440e-8
Identity = 43/126 (34.13%), Postives = 62/126 (49.21%), Query Frame = 1 
Query:   73 VAWSSSDGVIWTGAMLPA-DPSGRSVGAVVGTDEGFVALAGREGETGTAIPPSMWHSTDGVSW--QRADTTGLPNDAVVTSLATVDMGLRQRIVAVGSVGALEEAPAAWFSDDGGITWTTASVPAP 441
            +AW+S+DG  W   ++   DP   SVG VVGT +GF+A+     E      P++W S DG++W  Q  +  G   D  V     V +G      A+ + G + E P  + S D G TW   +VP P
Sbjct:  136 IAWTSTDGQTWDRQLMTGLDPRRASVGEVVGTPDGFLAVGSLWNEVEQTTAPAVWRSADGITWEAQLLEGEGWLADIAVHDGTMVAVG-SHGFDAMTAEGRVRE-PLLFVSTDAGGTWARQAVPEP 259
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BLAST of mRNA_M-pyrifera_M_contig120737.4268.1 vs. uniprot
Match: A0A1N6SC86_9ACTN (Uncharacterized protein n=2 Tax=Micromonospora avicenniae TaxID=1198245 RepID=A0A1N6SC86_9ACTN)

HSP 1 Score: 55.5 bits (132), Expect = 4.790e-6
Identity = 53/153 (34.64%), Postives = 71/153 (46.41%), Query Frame = 1 
Query:   25 VILGSDTTPGSTTATPVAWSSSDGVIWTGAMLPADPSGRSVGAVVGTDEGFVALAGREGETGTAIPPSMWHSTDGVS--WQRADTTGL--PNDAVVTSLATVDMGLRQRIVAVGSVGALEEAPAAWFSDDGGITWTTASVPAPPADHPLGAIA 471
            +++G+    G T  +P+AW+SSDGV W  A LPA P GR     V +  G V   G  G+   A   +     DG +  W+RA       P  AVV  L  V  GL    +AV   GA       W+SDD G +W   ++P   AD    A+A
Sbjct:  217 LVVGAVLPAGGTALSPLAWTSSDGVAWRRAELPA-PGGRGQAQRVVSVGGAVVAVGPVGDGFVAWRAAAEPVADGAAARWRRAGAFAAAGPGVAVVAGLTAVGSGL----LAVTRTGAGHRL---WYSDDLGGSWRPVTMPVAVADSGETAVA 361
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120737.4268.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI001E4B47747.440e-834.13glycoside hydrolase n=1 Tax=Propioniciclava soli T... [more]
A0A1N6SC86_9ACTN4.790e-634.64Uncharacterized protein n=2 Tax=Micromonospora avi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120737contigM-pyrifera_M_contig120737:8..478 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size471
Cds size471
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815726.8668792-CDS-M-pyrifera_M_contig120737:7..4781622815726.8668792-CDS-M-pyrifera_M_contig120737:7..478Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120737 8..478 -
1692277540.7975051-CDS-M-pyrifera_M_contig120737:7..4781692277540.7975051-CDS-M-pyrifera_M_contig120737:7..478Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120737 8..478 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120737.4268.1prot_M-pyrifera_M_contig120737.4268.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120737 8..478 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120737.4268.1

>prot_M-pyrifera_M_contig120737.4268.1 ID=prot_M-pyrifera_M_contig120737.4268.1|Name=mRNA_M-pyrifera_M_contig120737.4268.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=157bp
MAESAGTIVILGSDTTPGSTTATPVAWSSSDGVIWTGAMLPADPSGRSVG
AVVGTDEGFVALAGREGETGTAIPPSMWHSTDGVSWQRADTTGLPNDAVV
TSLATVDMGLRQRIVAVGSVGALEEAPAAWFSDDGGITWTTASVPAPPAD
HPLGAIA
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mRNA from alignment at M-pyrifera_M_contig120737:8..478-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120737.4268.1 ID=mRNA_M-pyrifera_M_contig120737.4268.1|Name=mRNA_M-pyrifera_M_contig120737.4268.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=471bp|location=Sequence derived from alignment at M-pyrifera_M_contig120737:8..478- (Macrocystis pyrifera P11B4 male)
ATGGCCGAGTCCGCCGGAACCATCGTGATCCTCGGAAGCGACACAACCCC
AGGGTCGACCACGGCCACGCCGGTCGCCTGGTCGAGTTCCGACGGCGTCA
TCTGGACCGGCGCGATGTTGCCAGCCGATCCGAGCGGACGCTCAGTCGGA
GCAGTGGTCGGGACAGACGAGGGATTCGTGGCACTGGCTGGCAGAGAGGG
AGAGACCGGCACGGCGATCCCACCCTCGATGTGGCATTCCACCGATGGAG
TCTCGTGGCAGCGCGCCGACACCACGGGTCTCCCGAACGATGCAGTCGTC
ACCTCGTTGGCCACGGTCGACATGGGCCTCCGGCAGCGAATCGTGGCCGT
CGGCTCCGTGGGCGCCCTCGAGGAGGCGCCAGCAGCCTGGTTCTCTGACG
ACGGCGGCATCACCTGGACCACCGCCTCCGTCCCGGCTCCCCCGGCTGAT
CATCCGCTCGGAGCGATCGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120737:8..478-

>mRNA_M-pyrifera_M_contig120737.4268.1 ID=mRNA_M-pyrifera_M_contig120737.4268.1|Name=mRNA_M-pyrifera_M_contig120737.4268.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=942bp|location=Sequence derived from alignment at M-pyrifera_M_contig120737:8..478- (Macrocystis pyrifera P11B4 male)
ATGGCCGAGTCCGCCGGAACCATCGTGATCCTCGGAAGCGACACAACCCC
AGGGTCGACCACGGCCACGCCGGTCGCCTGGTCGAGTTCCGACGGCGTCA
TCTGGACCGGCGCGATGTTGCCAGCCGATCCGAGCGGACGCTCAGTCGGA
GCAGTGGTCGGGACAGACGAGGGATTCGTGGCACTGGCTGGCAGAGAGGG
AGAGACCGGCACGGCGATCCCACCCTCGATGTGGCATTCCACCGATGGAG
TCTCGTGGCAGCGCGCCGACACCACGGGTCTCCCGAACGATGCAGTCGTC
ACCTCGTTGGCCACGGTCGACATGGGCCTCCGGCAGCGAATCGTGGCCGT
CGGCTCCGTGGGCGCCCTCGAGGAGGCGCCAGCAGCCTGGTTCTCTGACG
ACGGCGGCATCACCTGGACCACCGCCTCCGTCCCGGCTCCCCCGGCTGAT
CATCCGCTCGGAGCGATCGCCATGGCCGAGTCCGCCGGAACCATCGTGAT
CCTCGGAAGCGACACAACCCCAGGGTCGACCACGGCCACGCCGGTCGCCT
GGTCGAGTTCCGACGGCGTCATCTGGACCGGCGCGATGTTGCCAGCCGAT
CCGAGCGGACGCTCAGTCGGAGCAGTGGTCGGGACAGACGAGGGATTCGT
GGCACTGGCTGGCAGAGAGGGAGAGACCGGCACGGCGATCCCACCCTCGA
TGTGGCATTCCACCGATGGAGTCTCGTGGCAGCGCGCCGACACCACGGGT
CTCCCGAACGATGCAGTCGTCACCTCGTTGGCCACGGTCGACATGGGCCT
CCGGCAGCGAATCGTGGCCGTCGGCTCCGTGGGCGCCCTCGAGGAGGCGC
CAGCAGCCTGGTTCTCTGACGACGGCGGCATCACCTGGACCACCGCCTCC
GTCCCGGCTCCCCCGGCTGATCATCCGCTCGGAGCGATCGCC
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