mRNA_M-pyrifera_M_contig120732.4266.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120732.4266.1
Unique NamemRNA_M-pyrifera_M_contig120732.4266.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig120732.4266.1 vs. uniprot
Match: A0A7S4MS55_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MS55_9EUKA)

HSP 1 Score: 58.5 bits (140), Expect = 4.720e-9
Identity = 26/34 (76.47%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:   10 RDRGNQEATVFVGDLDEQVDEALLWELMLQCAPV 111
            R+  NQEAT++VGDLDE+VD+ALLWELMLQ APV
Sbjct:    6 REERNQEATIYVGDLDERVDDALLWELMLQAAPV 39
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BLAST of mRNA_M-pyrifera_M_contig120732.4266.1 vs. uniprot
Match: A0A7S3TWW7_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TWW7_EMIHU)

HSP 1 Score: 55.8 bits (133), Expect = 5.570e-8
Identity = 28/40 (70.00%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:    1 MGTRDRG---NQEATVFVGDLDEQVDEALLWELMLQCAPV 111
            MG R  G   NQEAT FVGDLD QVDE+LLWEL +QC PV
Sbjct:   38 MGERGVGFDRNQEATCFVGDLDSQVDESLLWELCVQCGPV 77
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BLAST of mRNA_M-pyrifera_M_contig120732.4266.1 vs. uniprot
Match: R1DYQ6_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DYQ6_EMIHU)

HSP 1 Score: 55.8 bits (133), Expect = 5.950e-8
Identity = 28/40 (70.00%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:    1 MGTRDRG---NQEATVFVGDLDEQVDEALLWELMLQCAPV 111
            MG R  G   NQEAT FVGDLD QVDE+LLWEL +QC PV
Sbjct:    1 MGERGVGFDRNQEATCFVGDLDSQVDESLLWELCVQCGPV 40
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BLAST of mRNA_M-pyrifera_M_contig120732.4266.1 vs. uniprot
Match: A0A0L6UF88_9BASI (Uncharacterized protein n=1 Tax=Puccinia sorghi TaxID=27349 RepID=A0A0L6UF88_9BASI)

HSP 1 Score: 51.6 bits (122), Expect = 7.300e-8
Identity = 22/33 (66.67%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:   22 NQEATVFVGDLDEQVDEALLWELMLQCAPVGRG 120
            NQEATV++G+LDE+  +AL+WELMLQ  PVG G
Sbjct:   10 NQEATVYMGNLDERCTDALVWELMLQAGPVGEG 42
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BLAST of mRNA_M-pyrifera_M_contig120732.4266.1 vs. uniprot
Match: A0A7S0IVF5_9EUKA (Hypothetical protein (Fragment) n=2 Tax=Coccolithales TaxID=418917 RepID=A0A7S0IVF5_9EUKA)

HSP 1 Score: 53.9 bits (128), Expect = 2.470e-7
Identity = 24/30 (80.00%), Postives = 26/30 (86.67%), Query Frame = 1 
Query:   22 NQEATVFVGDLDEQVDEALLWELMLQCAPV 111
            NQEAT +VGDLD QVDEALLWEL +QC PV
Sbjct:    8 NQEATCYVGDLDGQVDEALLWELCVQCGPV 37
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BLAST of mRNA_M-pyrifera_M_contig120732.4266.1 vs. uniprot
Match: G7E1E1_MIXOS (Uncharacterized protein n=2 Tax=Mixia osmundae (strain CBS 9802 / IAM 14324 / JCM 22182 / KY 12970) TaxID=764103 RepID=G7E1E1_MIXOS)

HSP 1 Score: 53.9 bits (128), Expect = 2.490e-7
Identity = 21/31 (67.74%), Postives = 29/31 (93.55%), Query Frame = 1 
Query:   22 NQEATVFVGDLDEQVDEALLWELMLQCAPVG 114
            NQEAT+++G+LDE+V +AL+WELMLQC P+G
Sbjct:   11 NQEATIYMGNLDERVTDALVWELMLQCGPIG 41
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BLAST of mRNA_M-pyrifera_M_contig120732.4266.1 vs. uniprot
Match: A0A7S4BW85_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BW85_CHRCT)

HSP 1 Score: 53.9 bits (128), Expect = 2.840e-7
Identity = 24/30 (80.00%), Postives = 26/30 (86.67%), Query Frame = 1 
Query:   22 NQEATVFVGDLDEQVDEALLWELMLQCAPV 111
            NQEAT +VGDLD QVDEALLWEL +QC PV
Sbjct:    8 NQEATCYVGDLDGQVDEALLWELCVQCGPV 37
[Close]
BLAST of mRNA_M-pyrifera_M_contig120732.4266.1 vs. uniprot
Match: A0A7S4BW31_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BW31_CHRCT)

HSP 1 Score: 53.9 bits (128), Expect = 2.840e-7
Identity = 24/30 (80.00%), Postives = 26/30 (86.67%), Query Frame = 1 
Query:   22 NQEATVFVGDLDEQVDEALLWELMLQCAPV 111
            NQEAT +VGDLD QVDEALLWEL +QC PV
Sbjct:    8 NQEATCYVGDLDGQVDEALLWELCVQCGPV 37
[Close]
BLAST of mRNA_M-pyrifera_M_contig120732.4266.1 vs. uniprot
Match: A0A812Y727_9DINO (Sap-49 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812Y727_9DINO)

HSP 1 Score: 50.4 bits (119), Expect = 7.170e-7
Identity = 23/37 (62.16%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:    1 MGTRDRGNQEATVFVGDLDEQVDEALLWELMLQCAPV 111
              T  + NQEAT++VG LD+QVDE LLWELM+Q  PV
Sbjct:    7 QSTVQQRNQEATLYVGGLDDQVDEELLWELMVQVGPV 43
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BLAST of mRNA_M-pyrifera_M_contig120732.4266.1 vs. uniprot
Match: L8H3Q7_ACACA (Spliceosomal protein, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H3Q7_ACACA)

HSP 1 Score: 52.4 bits (124), Expect = 9.690e-7
Identity = 24/37 (64.86%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    1 MGTRDRGNQEATVFVGDLDEQVDEALLWELMLQCAPV 111
            M  R+  NQ+ATV+VG+LD +V EALLWELMLQ  PV
Sbjct:    1 MYAREERNQDATVYVGELDSRVSEALLWELMLQSGPV 37
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120732.4266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4MS55_9EUKA4.720e-976.47Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A7S3TWW7_EMIHU5.570e-870.00Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
R1DYQ6_EMIHU5.950e-870.00Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A0L6UF88_9BASI7.300e-866.67Uncharacterized protein n=1 Tax=Puccinia sorghi Ta... [more]
A0A7S0IVF5_9EUKA2.470e-780.00Hypothetical protein (Fragment) n=2 Tax=Coccolitha... [more]
G7E1E1_MIXOS2.490e-767.74Uncharacterized protein n=2 Tax=Mixia osmundae (st... [more]
A0A7S4BW85_CHRCT2.840e-780.00Hypothetical protein n=2 Tax=Chrysotila carterae T... [more]
A0A7S4BW31_CHRCT2.840e-780.00Hypothetical protein n=2 Tax=Chrysotila carterae T... [more]
A0A812Y727_9DINO7.170e-762.16Sap-49 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=... [more]
L8H3Q7_ACACA9.690e-764.86Spliceosomal protein, putative n=1 Tax=Acanthamoeb... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120732contigM-pyrifera_M_contig120732:372..491 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size120
Cds size120
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815726.7873802-CDS-M-pyrifera_M_contig120732:371..4911622815726.7873802-CDS-M-pyrifera_M_contig120732:371..491Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120732 372..491 +
1692277540.7645862-CDS-M-pyrifera_M_contig120732:371..4911692277540.7645862-CDS-M-pyrifera_M_contig120732:371..491Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120732 372..491 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120732.4266.1prot_M-pyrifera_M_contig120732.4266.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120732 372..491 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120732.4266.1

>prot_M-pyrifera_M_contig120732.4266.1 ID=prot_M-pyrifera_M_contig120732.4266.1|Name=mRNA_M-pyrifera_M_contig120732.4266.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=40bp
MGTRDRGNQEATVFVGDLDEQVDEALLWELMLQCAPVGRG
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mRNA from alignment at M-pyrifera_M_contig120732:372..491+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120732.4266.1 ID=mRNA_M-pyrifera_M_contig120732.4266.1|Name=mRNA_M-pyrifera_M_contig120732.4266.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=120bp|location=Sequence derived from alignment at M-pyrifera_M_contig120732:372..491+ (Macrocystis pyrifera P11B4 male)
ATGGGCACGAGAGACAGAGGGAACCAGGAGGCGACCGTGTTCGTGGGCGA
CCTGGACGAGCAGGTGGACGAGGCGCTGCTCTGGGAGCTGATGCTGCAGT
GTGCACCAGTGGGTAGGGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120732:372..491+

>mRNA_M-pyrifera_M_contig120732.4266.1 ID=mRNA_M-pyrifera_M_contig120732.4266.1|Name=mRNA_M-pyrifera_M_contig120732.4266.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=240bp|location=Sequence derived from alignment at M-pyrifera_M_contig120732:372..491+ (Macrocystis pyrifera P11B4 male)
ATGGGCACGAGAGACAGAGGGAACCAGGAGGCGACCGTGTTCGTGGGCGA
CCTGGACGAGCAGGTGGACGAGGCGCTGCTCTGGGAGCTGATGCTGCAGT
GTGCACCAGTGGGTAGGGGCATGGGCACGAGAGACAGAGGGAACCAGGAG
GCGACCGTGTTCGTGGGCGACCTGGACGAGCAGGTGGACGAGGCGCTGCT
CTGGGAGCTGATGCTGCAGTGTGCACCAGTGGGTAGGGGC
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