mRNA_M-pyrifera_M_contig1207.4261.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1207.4261.1
Unique NamemRNA_M-pyrifera_M_contig1207.4261.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig1207.4261.1 vs. uniprot
Match: A0A022RTA6_ERYGU (Protein kinase domain-containing protein n=1 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022RTA6_ERYGU)

HSP 1 Score: 58.2 bits (139), Expect = 3.460e-6
Identity = 32/68 (47.06%), Postives = 42/68 (61.76%), Query Frame = 1 
Query:  511 IVAPGSLYAVNELLDAGADANLRQCCNHDDSPTPLHLASYVLAAEAAEVLLNHGADVDATDKWGQTPL 714
            +V  G L ++ ELLD+GAD N R      D  T LH+A+     + A +LL +GA VDATD+WG TPL
Sbjct:   46 LVNAGDLDSIKELLDSGADVNFRDI----DHRTALHVAACQGYDDVAHLLLQNGALVDATDRWGSTPL 109
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BLAST of mRNA_M-pyrifera_M_contig1207.4261.1 vs. uniprot
Match: A0A7D9HUT2_PARCT (Transient receptor potential cation channel subfamily A member 1 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HUT2_PARCT)

HSP 1 Score: 56.2 bits (134), Expect = 7.570e-6
Identity = 27/63 (42.86%), Postives = 37/63 (58.73%), Query Frame = 1 
Query:  538 VNELLDAGADANLRQCCNHDDSPTPLHLASYVLAAEAAEVLLNHGADVDATDKWGQTPLHLAA 726
            V +L++AGAD NL          TP+H+A+     E   +LL HGAD +  + +GQTPLH AA
Sbjct:   89 VKDLINAGADVNLMASLEEGVMVTPVHIAAKYNRCECLTILLEHGADANIANSFGQTPLHTAA 151
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BLAST of mRNA_M-pyrifera_M_contig1207.4261.1 vs. uniprot
Match: A0A803TS46_ANOCA (Uncharacterized protein n=1 Tax=Anolis carolinensis TaxID=28377 RepID=A0A803TS46_ANOCA)

HSP 1 Score: 53.1 bits (126), Expect = 5.540e-5
Identity = 25/46 (54.35%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:  592 HDDSPTPLHLASYVLAAEAAEVLLNHGADVDATDKWGQTPLHLAAS 729
            H+   TPLHLA+    A+AA  LL  GADV+A D+WG+TPLH A +
Sbjct:   55 HNSGETPLHLAARFSRADAARRLLASGADVNARDQWGRTPLHSAVA 100
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BLAST of mRNA_M-pyrifera_M_contig1207.4261.1 vs. uniprot
Match: A0A7J7IKV4_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IKV4_9RHOD)

HSP 1 Score: 54.7 bits (130), Expect = 6.470e-5
Identity = 32/67 (47.76%), Postives = 39/67 (58.21%), Query Frame = 1 
Query:  514 VAPGSLYAVNELLDAGADANLRQCCNHDDSPTPLHLASYVLAAEAAEVLLNHGADVDATDKWGQTPL 714
            VA   L AV  LLD G      Q C++D   TPLH+A+     + A  LL HGADV+A D+WG TPL
Sbjct: 1036 VAQNDLKAVKSLLDRGISP---QFCDYDQR-TPLHIAAAEGYVDIAVQLLQHGADVNARDRWGSTPL 1098
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1207.4261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A022RTA6_ERYGU3.460e-647.06Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A7D9HUT2_PARCT7.570e-642.86Transient receptor potential cation channel subfam... [more]
A0A803TS46_ANOCA5.540e-554.35Uncharacterized protein n=1 Tax=Anolis carolinensi... [more]
A0A7J7IKV4_9RHOD6.470e-547.76Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1207contigM-pyrifera_M_contig1207:3522..4553 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size735
Cds size735
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1207.4261.1prot_M-pyrifera_M_contig1207.4261.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1207 3522..4553 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815726.3392694-CDS-M-pyrifera_M_contig1207:3521..36511622815726.3392694-CDS-M-pyrifera_M_contig1207:3521..3651Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1207 3522..3651 -
1692277540.3986883-CDS-M-pyrifera_M_contig1207:3521..36511692277540.3986883-CDS-M-pyrifera_M_contig1207:3521..3651Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1207 3522..3651 -
1622815726.3512008-CDS-M-pyrifera_M_contig1207:3843..42831622815726.3512008-CDS-M-pyrifera_M_contig1207:3843..4283Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1207 3844..4283 -
1692277540.4132762-CDS-M-pyrifera_M_contig1207:3843..42831692277540.4132762-CDS-M-pyrifera_M_contig1207:3843..4283Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1207 3844..4283 -
1622815726.3623765-CDS-M-pyrifera_M_contig1207:4388..45531622815726.3623765-CDS-M-pyrifera_M_contig1207:4388..4553Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1207 4389..4553 -
1692277540.4265037-CDS-M-pyrifera_M_contig1207:4388..45531692277540.4265037-CDS-M-pyrifera_M_contig1207:4388..4553Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1207 4389..4553 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1207.4261.1

>prot_M-pyrifera_M_contig1207.4261.1 ID=prot_M-pyrifera_M_contig1207.4261.1|Name=mRNA_M-pyrifera_M_contig1207.4261.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=245bp
VESAVCVGNVGLLKKLLKLGASANTRCSDGDSLLHMAAGAGNQHAVRALL
EHGAKINFRPTEEDVTALDLAAVSGSVAVIEVFRQHGADFRTRNWDGYTA
LHAAASEDQVGAIETLILGGADPNARDGAGSTPLHMAMSNNNHASVRALC
ALRADMNRPDATGRTPLHFGIVAPGSLYAVNELLDAGADANLRQCCNHDD
SPTPLHLASYVLAAEAAEVLLNHGADVDATDKWGQTPLHLAASVS
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mRNA from alignment at M-pyrifera_M_contig1207:3522..4553-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1207.4261.1 ID=mRNA_M-pyrifera_M_contig1207.4261.1|Name=mRNA_M-pyrifera_M_contig1207.4261.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1032bp|location=Sequence derived from alignment at M-pyrifera_M_contig1207:3522..4553- (Macrocystis pyrifera P11B4 male)
GTGGAGAGTGCGGTGTGTGTCGGGAACGTCGGCCTCCTGAAGAAGCTGCT
GAAGCTTGGCGCATCCGCCAACACCCGATGTTCGGACGGGGATAGTCTGC
TGCACATGGCTGCTGGCGCCGGCAACCAGCACGCCGTTCGAGCCCTTCTT
GAACACGGGGCAAAGGTGCACGCGTGCGGTAGCGGTCAGGACAGCCGCAC
GGCTCTCCACCTAGCGGCCATGAACGAAAACCCCCGCACGGTCGCCGCCC
TCCTGGAAGCGGGCGCGCAGATAAACTTTCGCCCCACCGAGGAGGACGTC
ACGGCTCTCGATCTGGCCGCCGTCTCCGGGAGCGTAGCAGTGATCGAGGT
CTTCCGACAACACGGGGCAGATTTTCGTACTAGAAACTGGGACGGGTATA
CCGCGCTGCACGCCGCAGCCTCGGAGGACCAGGTCGGCGCCATCGAGACT
CTCATCCTAGGCGGGGCAGACCCCAACGCCCGGGACGGAGCGGGGTCGAC
GCCTCTGCACATGGCCATGTCGAACAACAACCACGCATCCGTAAGAGCCC
TGTGTGCGCTGAGGGCCGACATGAACAGGCCCGACGCCACCGGCCGTACG
CCGCTGCACTTCGGGATCGTGGCACCCGGCAGCCTCTACGCGGTTAACGA
GCTCTTGGATGCTGGCGCGGATGCCAACCTCCGCCAATGCTGTAACCATG
ACGACTCGCCGTTGGACATGGCCGCCTGGCTCGGGAAGCTGGAAATTATG
AGGGCGCTCCTCGAGCACGGAGCGGTCAGCACGGCCGTGGACTCATTCGG
TCAATCGGCCCTTCACAAGGCCTCTTGCCGTAACGAGGCCGGCGCGATCG
ACGCCCTCATCGGAGCGGGGGCCAGCGTGAACGCCCAGGACGTCGACGAA
AGAACGCCGCTTCACCTCGCTTCCTACGTCCTGGCGGCCGAAGCCGCGGA
AGTGCTTCTGAATCACGGCGCTGATGTCGACGCAACCGACAAATGGGGGC
AGACGCCGCTCCACCTGGCAGCCAGCGTGTCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1207:3522..4553-

>mRNA_M-pyrifera_M_contig1207.4261.1 ID=mRNA_M-pyrifera_M_contig1207.4261.1|Name=mRNA_M-pyrifera_M_contig1207.4261.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1470bp|location=Sequence derived from alignment at M-pyrifera_M_contig1207:3522..4553- (Macrocystis pyrifera P11B4 male)
GTGGAGAGTGCGGTGTGTGTCGGGAACGTCGGCCTCCTGAAGAAGCTGCT
GAAGCTTGGCGCATCCGCCAACACCCGATGTTCGGACGGGGATAGTCTGC
TGCACATGGCTGCTGGCGCCGGCAACCAGCACGCCGTTCGAGCCCTTCTT
GAACACGGGGCAAAGGTGGAGAGTGCGGTGTGTGTCGGGAACGTCGGCCT
CCTGAAGAAGCTGCTGAAGCTTGGCGCATCCGCCAACACCCGATGTTCGG
ACGGGGATAGTCTGCTGCACATGGCTGCTGGCGCCGGCAACCAGCACGCC
GTTCGAGCCCTTCTTGAACACGGGGCAAAGATAAACTTTCGCCCCACCGA
GGAGGACGTCACGGCTCTCGATCTGGCCGCCGTCTCCGGGAGCGTAGCAG
TGATCGAGGTCTTCCGACAACACGGGGCAGATTTTCGTACTAGAAACTGG
GACGGGTATACCGCGCTGCACGCCGCAGCCTCGGAGGACCAGGTCGGCGC
CATCGAGACTCTCATCCTAGGCGGGGCAGACCCCAACGCCCGGGACGGAG
CGGGGTCGACGCCTCTGCACATGGCCATGTCGAACAACAACCACGCATCC
GTAAGAGCCCTGTGTGCGCTGAGGGCCGACATGAACAGGCCCGACGCCAC
CGGCCGTACGCCGCTGCACTTCGGGATCGTGGCACCCGGCAGCCTCTACG
CGGTTAACGAGCTCTTGGATGCTGGCGCGGATGCCAACCTCCGCCAATGC
TGTAACCATGACGACTCGCCATAAACTTTCGCCCCACCGAGGAGGACGTC
ACGGCTCTCGATCTGGCCGCCGTCTCCGGGAGCGTAGCAGTGATCGAGGT
CTTCCGACAACACGGGGCAGATTTTCGTACTAGAAACTGGGACGGGTATA
CCGCGCTGCACGCCGCAGCCTCGGAGGACCAGGTCGGCGCCATCGAGACT
CTCATCCTAGGCGGGGCAGACCCCAACGCCCGGGACGGAGCGGGGTCGAC
GCCTCTGCACATGGCCATGTCGAACAACAACCACGCATCCGTAAGAGCCC
TGTGTGCGCTGAGGGCCGACATGAACAGGCCCGACGCCACCGGCCGTACG
CCGCTGCACTTCGGGATCGTGGCACCCGGCAGCCTCTACGCGGTTAACGA
GCTCTTGGATGCTGGCGCGGATGCCAACCTCCGCCAATGCTGTAACCATG
ACGACTCGCCAACGCCGCTTCACCTCGCTTCCTACGTCCTGGCGGCCGAA
GCCGCGGAAGTGCTTCTGAATCACGGCGCTGATGTCGACGCAACCGACAA
ATGGGGGCAGACGCCGCTCCACCTGGCAGCCAGCGTGTCCAACGCCGCTT
CACCTCGCTTCCTACGTCCTGGCGGCCGAAGCCGCGGAAGTGCTTCTGAA
TCACGGCGCTGATGTCGACGCAACCGACAAATGGGGGCAGACGCCGCTCC
ACCTGGCAGCCAGCGTGTCC
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