mRNA_M-pyrifera_M_contig120668.4259.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120668.4259.1
Unique NamemRNA_M-pyrifera_M_contig120668.4259.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig120668.4259.1 vs. uniprot
Match: A0A2N0S189_9GLOM (Zn(2)-C6 fungal-type domain-containing protein n=4 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A2N0S189_9GLOM)

HSP 1 Score: 47.0 bits (110), Expect = 3.470e-5
Identity = 17/30 (56.67%), Postives = 21/30 (70.00%), Query Frame = 1 
Query:    1 TYCRQRRIKCGGGNPCENCVKADRVCTYAE 90
            ++CRQR+IKC G NPC NC K    CTY +
Sbjct:   28 SFCRQRKIKCDGRNPCANCKKYSNACTYVK 57
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BLAST of mRNA_M-pyrifera_M_contig120668.4259.1 vs. uniprot
Match: A0A1L9X8C9_ASPA1 (Zn(2)-C6 fungal-type domain-containing protein (Fragment) n=2 Tax=Aspergillus TaxID=5052 RepID=A0A1L9X8C9_ASPA1)

HSP 1 Score: 48.9 bits (115), Expect = 4.950e-5
Identity = 20/35 (57.14%), Postives = 24/35 (68.57%), Query Frame = 1 
Query:    7 CRQRRIKCGGGNPCENCVKADRVCTYAEPQQRRGP 111
            C+ R+IKCGGG PC++C  A   CTY   QQ RGP
Sbjct:   15 CKIRKIKCGGGQPCQSCFNARIKCTYIRVQQPRGP 49
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BLAST of mRNA_M-pyrifera_M_contig120668.4259.1 vs. uniprot
Match: A0A8H7VYL8_9FUNG (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Thamnidium elegans TaxID=101142 RepID=A0A8H7VYL8_9FUNG)

HSP 1 Score: 48.1 bits (113), Expect = 9.280e-5
Identity = 16/35 (45.71%), Postives = 26/35 (74.29%), Query Frame = 1 
Query:    1 TYCRQRRIKCGGGNPCENCVKADRVCTYAEPQQRR 105
            T CR++++KC G  PC+ C KA+ +C Y +PQQ++
Sbjct:   30 TPCRKKKVKCDGQQPCDRCAKAETICIYDKPQQKK 64
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BLAST of mRNA_M-pyrifera_M_contig120668.4259.1 vs. uniprot
Match: A0A1J9QP95_9EURO (C6 finger domain transcription factor nscR n=1 Tax=Emergomyces pasteurianus Ep9510 TaxID=1447872 RepID=A0A1J9QP95_9EURO)

HSP 1 Score: 48.1 bits (113), Expect = 9.380e-5
Identity = 22/43 (51.16%), Postives = 28/43 (65.12%), Query Frame = 1 
Query:    7 CRQRRIKCGGGNPCENCVKADRV--CTYAEPQQRRGPRAGELS 129
            CR R++KC  G PCENCVK      CTYA+P+ RR P + + S
Sbjct:   38 CRNRKLKCNRGIPCENCVKRSDSPSCTYAQPKTRRKPTSSQAS 80
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120668.4259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2N0S189_9GLOM3.470e-556.67Zn(2)-C6 fungal-type domain-containing protein n=4... [more]
A0A1L9X8C9_ASPA14.950e-557.14Zn(2)-C6 fungal-type domain-containing protein (Fr... [more]
A0A8H7VYL8_9FUNG9.280e-545.71Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A1J9QP95_9EURO9.380e-551.16C6 finger domain transcription factor nscR n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120668contigM-pyrifera_M_contig120668:239..433 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size195
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815726.2695549-CDS-M-pyrifera_M_contig120668:238..4331622815726.2695549-CDS-M-pyrifera_M_contig120668:238..433Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120668 239..433 +
1692277540.3795726-CDS-M-pyrifera_M_contig120668:238..4331692277540.3795726-CDS-M-pyrifera_M_contig120668:238..433Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120668 239..433 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120668.4259.1prot_M-pyrifera_M_contig120668.4259.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120668 239..433 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120668.4259.1

>prot_M-pyrifera_M_contig120668.4259.1 ID=prot_M-pyrifera_M_contig120668.4259.1|Name=mRNA_M-pyrifera_M_contig120668.4259.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=65bp
TYCRQRRIKCGGGNPCENCVKADRVCTYAEPQQRRGPRAGELSALREETM
LQKEQIASLQSTIAE
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mRNA from alignment at M-pyrifera_M_contig120668:239..433+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120668.4259.1 ID=mRNA_M-pyrifera_M_contig120668.4259.1|Name=mRNA_M-pyrifera_M_contig120668.4259.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=195bp|location=Sequence derived from alignment at M-pyrifera_M_contig120668:239..433+ (Macrocystis pyrifera P11B4 male)
ACATACTGTCGCCAGCGGCGGATTAAGTGTGGGGGCGGTAACCCCTGCGA
AAACTGCGTTAAGGCGGATCGGGTGTGTACTTACGCGGAGCCCCAGCAGA
GGAGGGGGCCAAGGGCGGGAGAGTTGAGTGCTCTTCGAGAAGAGACGATG
CTACAGAAGGAACAGATTGCTTCGTTGCAATCCACAATTGCAGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120668:239..433+

>mRNA_M-pyrifera_M_contig120668.4259.1 ID=mRNA_M-pyrifera_M_contig120668.4259.1|Name=mRNA_M-pyrifera_M_contig120668.4259.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=390bp|location=Sequence derived from alignment at M-pyrifera_M_contig120668:239..433+ (Macrocystis pyrifera P11B4 male)
ACATACTGTCGCCAGCGGCGGATTAAGTGTGGGGGCGGTAACCCCTGCGA
AAACTGCGTTAAGGCGGATCGGGTGTGTACTTACGCGGAGCCCCAGCAGA
GGAGGGGGCCAAGGGCGGGAGAGTTGAGTGCTCTTCGAGAAGAGACGATG
CTACAGAAGGAACAGATTGCTTCGTTGCAATCCACAATTGCAGAAACATA
CTGTCGCCAGCGGCGGATTAAGTGTGGGGGCGGTAACCCCTGCGAAAACT
GCGTTAAGGCGGATCGGGTGTGTACTTACGCGGAGCCCCAGCAGAGGAGG
GGGCCAAGGGCGGGAGAGTTGAGTGCTCTTCGAGAAGAGACGATGCTACA
GAAGGAACAGATTGCTTCGTTGCAATCCACAATTGCAGAA
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