mRNA_M-pyrifera_M_contig120614.4245.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120614.4245.1
Unique NamemRNA_M-pyrifera_M_contig120614.4245.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig120614.4245.1 vs. uniprot
Match: A9V1J8_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V1J8_MONBE)

HSP 1 Score: 117 bits (293), Expect = 1.430e-29
Identity = 61/126 (48.41%), Postives = 83/126 (65.87%), Query Frame = 1
Query:    1 NPVPGVSWVPNASFSDEFDGSALDSGKWWAKNPTWAGRQPGLFVEANVRVRNGFLGLWAEHARL-NASERRLGFDNYTTAAVQSKRMPLYGLFEVRSQIGNSSISSSFWFT-NNGKDMPWRTEIDV 372
            +P  G  W    + +D+F+G  L++ KW   NP W GR PGLF  +NV+V NG L LWA +A + + S R+ G+ N+TT+AVQS  +  YG FE+RS++G S +SSSFWF  NNG +  W TEIDV
Sbjct:   32 DPPAGYDWHVFPAMTDDFEGQQLNTTKWLDHNPEWQGRLPGLFNASNVKVSNGTLQLWARNANITDPSLRQQGYANFTTSAVQSTTLVRYGYFEIRSRVGTSRVSSSFWFYHNNGTE--W-TEIDV 154          
BLAST of mRNA_M-pyrifera_M_contig120614.4245.1 vs. uniprot
Match: R7JFW8_9BACT (Glycoside hydrolase family 16 n=2 Tax=Parabacteroides TaxID=375288 RepID=R7JFW8_9BACT)

HSP 1 Score: 106 bits (264), Expect = 1.400e-25
Identity = 56/124 (45.16%), Postives = 78/124 (62.90%), Query Frame = 1
Query:    4 PVPGVSWVPNASFSDEFDGSALDSGKWWAKNPTWAGRQPGLFVEANVRVRNGFLGLWAEHARL-NASERRLGFDNYTTAAVQSKRMPLYGLFEVRSQIGNSSISSSFWFTNNGKDMPWRTEIDV 372
            P+    W  N   SDEF+G++LD+ KW+  NPTW GRQP LF   NVRV NG L L  +  ++ NA E   G+  +T+AAVQSK+  LYG FE++ +  NS++SS+FW     +D   + EID+
Sbjct:   23 PIGAEHWTYNEEISDEFEGTSLDTAKWFDHNPTWIGRQPSLFRRENVRVENGQLILSGKREQVPNAPE---GYHTFTSAAVQSKKKVLYGFFEIKCKPMNSALSSAFWLYV--QDSIKQEEIDI 141          
BLAST of mRNA_M-pyrifera_M_contig120614.4245.1 vs. uniprot
Match: UPI0009F39AE3 (family 16 glycosylhydrolase n=1 Tax=Millionella massiliensis TaxID=1871023 RepID=UPI0009F39AE3)

HSP 1 Score: 100 bits (250), Expect = 2.360e-23
Identity = 52/117 (44.44%), Postives = 71/117 (60.68%), Query Frame = 1
Query:   22 WVPNASFSDEFDGSALDSGKWWAKNPTWAGRQPGLFVEANVRVRNGFLGLWAEHARLNASERRLGFDNYTTAAVQSKRMPLYGLFEVRSQIGNSSISSSFWFTNNGKDMPWRTEIDV 372
            WV N + SDEFDG++LD+ KW+  NPTW GRQP LF   NVRV +G L L      +  +    G+  +T+AAVQS    LYG FE+R +   S++SS+FW     +D   + EID+
Sbjct:   50 WVYNEAISDEFDGTSLDTTKWFDHNPTWTGRQPSLFRPENVRVEDGMLILTGRREEVKDAPE--GYHTFTSAAVQSTHKVLYGFFEIRCRPMRSALSSAFWLYI--QDSVKQEEIDI 162          
BLAST of mRNA_M-pyrifera_M_contig120614.4245.1 vs. uniprot
Match: A0A1Y4HDR3_9BACT (GH16 domain-containing protein n=2 Tax=Mediterranea sp. An20 TaxID=1965586 RepID=A0A1Y4HDR3_9BACT)

HSP 1 Score: 99.4 bits (246), Expect = 1.500e-22
Identity = 51/117 (43.59%), Postives = 71/117 (60.68%), Query Frame = 1
Query:   22 WVPNASFSDEFDGSALDSGKWWAKNPTWAGRQPGLFVEANVRVRNGFLGLWAEHARLNASERRLGFDNYTTAAVQSKRMPLYGLFEVRSQIGNSSISSSFWFTNNGKDMPWRTEIDV 372
            WV N + SDEF+G++LD+ KW+  NP+W GRQP LF   NVRV +G L L      +  +    G+  +TTAAVQS    LYG FE+R +   S++SS+FW   +  D   + EID+
Sbjct:   81 WVYNEAISDEFEGTSLDTAKWFDHNPSWIGRQPSLFRPENVRVEDGMLILTGRREEVKDAPE--GYHTFTTAAVQSTHKVLYGFFEIRCRPMRSALSSAFWLYIS--DSLKQEEIDI 193          
BLAST of mRNA_M-pyrifera_M_contig120614.4245.1 vs. uniprot
Match: A0A5Q4H154_9PLAN (Glycosyl hydrolase family protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A5Q4H154_9PLAN)

HSP 1 Score: 97.4 bits (241), Expect = 5.410e-22
Identity = 54/118 (45.76%), Postives = 71/118 (60.17%), Query Frame = 1
Query:   22 WVPNASFSDEFDGSALDSGKWWAKNPTWAGRQPGLFVEANVRVRNGFLGLWAEHARLNASERRLGFDNYTTAAVQSKRMPLYGLFEVRSQIGNSSISSSFWFTNNGKDMP-WRTEIDV 372
            WV     SDEF+G  LD GKW      W GRQP LF + NV V +G L L     ++ A   +LG+ +YT+AA+ SK    YG +EV+++  NS+ SSSFWF    +D+P W TEIDV
Sbjct:   65 WVKFEPMSDEFEGQELDPGKWNRGLYWWKGRQPALFSDKNVTVSDGKLHLTMRKEKVPAEFEKLGYKDYTSAALHSKIRSGYGYYEVKAKPMNSAGSSSFWF--QVEDVPGWLTEIDV 180          
BLAST of mRNA_M-pyrifera_M_contig120614.4245.1 vs. uniprot
Match: UPI001C7CF8A1 (beta-porphyranase D n=1 Tax=Flavobacterium sp. UMI-01 TaxID=1441053 RepID=UPI001C7CF8A1)

HSP 1 Score: 96.7 bits (239), Expect = 4.480e-21
Identity = 45/115 (39.13%), Postives = 71/115 (61.74%), Query Frame = 1
Query:    4 PVPGVSWVPNASFSDEFDGSALDSGKWWAKNPTWAGRQPGLFVEANVRVRNGFLGLWAEHARLNASERRLGFD---NYTTAAVQSKRMPLYGLFEVRSQIGNSSISSSFWFTNNG 339
            P  G  WV N  FSDEF+G+ LD+ KW+  +PTW GR+PG+F+ + V V++GFL +  E  + +   +  G +   N    AV SK+  L+G +E + +   +S+S++FWF+ NG
Sbjct:   32 PPLGKRWVVNPDFSDEFNGTQLDTTKWYDHHPTWKGREPGIFLSSQVSVKDGFLQIKGEKLKKDTIIKAYGKESIYNIAGGAVVSKKSVLFGYYETKVKAAATSMSTTFWFSTNG 146          
BLAST of mRNA_M-pyrifera_M_contig120614.4245.1 vs. uniprot
Match: A0A356EPZ3_9PLAN (Glycoside hydrolase n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A356EPZ3_9PLAN)

HSP 1 Score: 90.1 bits (222), Expect = 1.200e-19
Identity = 49/112 (43.75%), Postives = 68/112 (60.71%), Query Frame = 1
Query:   40 FSDEFDGSALDSGKWWAKNPTWAGRQPGLFVEANVRVRNGFLGLWAEHARLNASERRLGFDNYTTAAVQSKRMPLYGLFEVRSQIGNSSISSSFWFTNNGKDMP-WRTEIDV 372
             SDEF+G  LD  KW      W GR+P LF + NV V +G L L     ++     ++G+ +YT+AA+ SK    YG +EV+++  NS+ SSSFWF    +D+P WRTEIDV
Sbjct:    6 MSDEFEGQELDLNKWNRGLYWWKGRRPALFRDHNVTVSDGNLHLTMRKEKVPEEFEKMGYKDYTSAALHSKSRSSYGYYEVKAKPMNSAGSSSFWF--QVEDVPGWRTEIDV 115          
BLAST of mRNA_M-pyrifera_M_contig120614.4245.1 vs. uniprot
Match: A0A1H4UBG8_9FLAO (Glycosyl hydrolases family 16 n=6 Tax=Maribacter TaxID=252356 RepID=A0A1H4UBG8_9FLAO)

HSP 1 Score: 92.0 bits (227), Expect = 1.960e-19
Identity = 46/115 (40.00%), Postives = 70/115 (60.87%), Query Frame = 1
Query:    4 PVPGVSWVPNASFSDEFDGSALDSGKWWAKNPTWAGRQPGLFVEANVRVRNGFLGLWAEHARLNASERRLGFD---NYTTAAVQSKRMPLYGLFEVRSQIGNSSISSSFWFTNNG 339
            P  G  WV N  FSDEF+G+ALD+ KW   +PTW GR+PGLF++  V V +G+L L  E  + + +    G +   +   AAV SK+   +G FE R++   +++S++FWF+  G
Sbjct:   28 PPLGKRWVMNPDFSDEFNGTALDTTKWLDHHPTWIGREPGLFMKPQVSVGDGYLQLKGEMMKKDTTINAYGSNRTFSIAGAAVVSKKKTQFGYFETRAKAAATTMSTTFWFSTVG 142          
BLAST of mRNA_M-pyrifera_M_contig120614.4245.1 vs. uniprot
Match: A0A1M6GJ38_9FLAO (Glycosyl hydrolases family 16 n=1 Tax=Pseudozobellia thermophila TaxID=192903 RepID=A0A1M6GJ38_9FLAO)

HSP 1 Score: 91.3 bits (225), Expect = 3.780e-19
Identity = 46/115 (40.00%), Postives = 66/115 (57.39%), Query Frame = 1
Query:    4 PVPGVSWVPNASFSDEFDGSALDSGKWWAKNPTWAGRQPGLFVEANVRVRNGFLGLWAEHARLNASERRLGFD---NYTTAAVQSKRMPLYGLFEVRSQIGNSSISSSFWFTNNG 339
            P  G  WV N  FSDEF+G+ LD+ KW   +PTW GR PGLF+ + V V +G+L L  EH   +      G D   N   AAV SK+  ++G +E R +   +++S++FW +  G
Sbjct:   30 PPMGKRWVMNPDFSDEFNGTELDTTKWLDHHPTWIGRPPGLFLASQVSVADGYLQLKGEHMGKDTIVHAYGKDQTFNIAGAAVVSKKKTMFGYYECRVKAAATTMSTTFWLSTVG 144          
BLAST of mRNA_M-pyrifera_M_contig120614.4245.1 vs. uniprot
Match: UPI001C888DB7 (family 16 glycosylhydrolase n=1 Tax=Reichenbachiella versicolor TaxID=1821036 RepID=UPI001C888DB7)

HSP 1 Score: 91.3 bits (225), Expect = 3.960e-19
Identity = 44/111 (39.64%), Postives = 69/111 (62.16%), Query Frame = 1
Query:    4 PVPGVSWVPNASFSDEFDGSALDSGKWWAKNPTWAGRQPGLFVEANVRVRNGFLGLWAEHARLNASERRLGFDNYTTAAVQSKRMPLYGLFEVRSQIGNSSISSSFWFTNN 336
            P  G  WV N +FSDEF+G++LDS KW+  +PTW GR+PG+F+ + V V++GFL + AE  + +       F N    AV SK     G +E R +   +++S++FWF+++
Sbjct:   26 PPLGKRWVLNPNFSDEFNGTSLDSTKWYNYHPTWKGREPGIFLSSQVSVKDGFLQIKAEKLKKDTIINNRVF-NIAGGAVVSKNKAYLGYYESRIKASETTMSATFWFSSH 135          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120614.4245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A9V1J8_MONBE1.430e-2948.41Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
R7JFW8_9BACT1.400e-2545.16Glycoside hydrolase family 16 n=2 Tax=Parabacteroi... [more]
UPI0009F39AE32.360e-2344.44family 16 glycosylhydrolase n=1 Tax=Millionella ma... [more]
A0A1Y4HDR3_9BACT1.500e-2243.59GH16 domain-containing protein n=2 Tax=Mediterrane... [more]
A0A5Q4H154_9PLAN5.410e-2245.76Glycosyl hydrolase family protein n=1 Tax=Planctom... [more]
UPI001C7CF8A14.480e-2139.13beta-porphyranase D n=1 Tax=Flavobacterium sp. UMI... [more]
A0A356EPZ3_9PLAN1.200e-1943.75Glycoside hydrolase n=1 Tax=Planctomycetaceae bact... [more]
A0A1H4UBG8_9FLAO1.960e-1940.00Glycosyl hydrolases family 16 n=6 Tax=Maribacter T... [more]
A0A1M6GJ38_9FLAO3.780e-1940.00Glycosyl hydrolases family 16 n=1 Tax=Pseudozobell... [more]
UPI001C888DB73.960e-1939.64family 16 glycosylhydrolase n=1 Tax=Reichenbachiel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120614contigM-pyrifera_M_contig120614:165..536 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score109.8
Seed ortholog evalue9.4e-22
Seed eggNOG ortholog583355.Caka_0059
KEGG koko:K20846
Hectar predicted targeting categoryother localisation
EggNOG free text desc.xyloglucan:xyloglucosyl transferase activity
EggNOG OGsCOG2273@1,COG2273@2
EC3.2.1.83
COG Functional cat.G
CAZyGH16
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons1
Model size372
Cds size372
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815725.7109509-CDS-M-pyrifera_M_contig120614:164..5361622815725.7109509-CDS-M-pyrifera_M_contig120614:164..536Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120614 165..536 +
1692277540.1563559-CDS-M-pyrifera_M_contig120614:164..5361692277540.1563559-CDS-M-pyrifera_M_contig120614:164..536Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120614 165..536 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120614.4245.1prot_M-pyrifera_M_contig120614.4245.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120614 165..536 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120614.4245.1

>prot_M-pyrifera_M_contig120614.4245.1 ID=prot_M-pyrifera_M_contig120614.4245.1|Name=mRNA_M-pyrifera_M_contig120614.4245.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=124bp
NPVPGVSWVPNASFSDEFDGSALDSGKWWAKNPTWAGRQPGLFVEANVRV
RNGFLGLWAEHARLNASERRLGFDNYTTAAVQSKRMPLYGLFEVRSQIGN
SSISSSFWFTNNGKDMPWRTEIDV
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mRNA from alignment at M-pyrifera_M_contig120614:165..536+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120614.4245.1 ID=mRNA_M-pyrifera_M_contig120614.4245.1|Name=mRNA_M-pyrifera_M_contig120614.4245.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=372bp|location=Sequence derived from alignment at M-pyrifera_M_contig120614:165..536+ (Macrocystis pyrifera P11B4 male)
AATCCCGTTCCTGGCGTTTCTTGGGTGCCAAACGCTTCGTTCAGTGATGA ATTCGACGGGAGTGCGCTGGACTCTGGGAAGTGGTGGGCGAAGAACCCGA CGTGGGCCGGGCGGCAGCCTGGGCTGTTTGTGGAGGCGAATGTGCGGGTC AGGAATGGGTTTTTGGGCCTTTGGGCGGAGCATGCGCGTTTGAACGCCTC GGAGCGGCGACTGGGGTTCGACAACTACACCACTGCGGCCGTGCAGAGCA AGCGAATGCCGCTCTATGGCCTGTTTGAGGTTCGAAGCCAAATCGGCAAT TCTTCCATCTCGTCCTCCTTTTGGTTTACGAACAACGGCAAAGACATGCC GTGGCGCACAGAAATCGACGTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120614:165..536+

>mRNA_M-pyrifera_M_contig120614.4245.1 ID=mRNA_M-pyrifera_M_contig120614.4245.1|Name=mRNA_M-pyrifera_M_contig120614.4245.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=744bp|location=Sequence derived from alignment at M-pyrifera_M_contig120614:165..536+ (Macrocystis pyrifera P11B4 male)
AATCCCGTTCCTGGCGTTTCTTGGGTGCCAAACGCTTCGTTCAGTGATGA
ATTCGACGGGAGTGCGCTGGACTCTGGGAAGTGGTGGGCGAAGAACCCGA
CGTGGGCCGGGCGGCAGCCTGGGCTGTTTGTGGAGGCGAATGTGCGGGTC
AGGAATGGGTTTTTGGGCCTTTGGGCGGAGCATGCGCGTTTGAACGCCTC
GGAGCGGCGACTGGGGTTCGACAACTACACCACTGCGGCCGTGCAGAGCA
AGCGAATGCCGCTCTATGGCCTGTTTGAGGTTCGAAGCCAAATCGGCAAT
TCTTCCATCTCGTCCTCCTTTTGGTTTACGAACAACGGCAAAGACATGCC
GTGGCGCACAGAAATCGACGTTAATCCCGTTCCTGGCGTTTCTTGGGTGC
CAAACGCTTCGTTCAGTGATGAATTCGACGGGAGTGCGCTGGACTCTGGG
AAGTGGTGGGCGAAGAACCCGACGTGGGCCGGGCGGCAGCCTGGGCTGTT
TGTGGAGGCGAATGTGCGGGTCAGGAATGGGTTTTTGGGCCTTTGGGCGG
AGCATGCGCGTTTGAACGCCTCGGAGCGGCGACTGGGGTTCGACAACTAC
ACCACTGCGGCCGTGCAGAGCAAGCGAATGCCGCTCTATGGCCTGTTTGA
GGTTCGAAGCCAAATCGGCAATTCTTCCATCTCGTCCTCCTTTTGGTTTA
CGAACAACGGCAAAGACATGCCGTGGCGCACAGAAATCGACGTT
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