mRNA_M-pyrifera_M_contig120600.4242.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120600.4242.1
Unique NamemRNA_M-pyrifera_M_contig120600.4242.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig120600.4242.1 vs. uniprot
Match: A0A7S0TSN0_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TSN0_HEMAN)

HSP 1 Score: 67.4 bits (163), Expect = 3.910e-11
Identity = 38/89 (42.70%), Postives = 51/89 (57.30%), Query Frame = 1
Query:   13 GAARNQKNRQERKHSLHEHAPSTEETVLIHKLYKEREMSRRNLDSVVVSPDETYFEATKLMHPARKNVHGKVFGGYIMREAFELGYLCA 279
            G   N+K RQ+RK SL    PS +ET+L+HK+  +       L        ET  + T+LM P  KN  GK+FGG++MREA+EL Y  A
Sbjct:  267 GGLANEKRRQDRKTSLRTQHPSEDETMLLHKVMMDSSKQGEGLKI-----GETMLQTTELMQPQEKNRSGKIFGGFLMREAYELAYTTA 350          
BLAST of mRNA_M-pyrifera_M_contig120600.4242.1 vs. uniprot
Match: A0A0V0R7H5_PSEPJ (Uncharacterized protein n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0R7H5_PSEPJ)

HSP 1 Score: 67.0 bits (162), Expect = 5.860e-11
Identity = 33/89 (37.08%), Postives = 53/89 (59.55%), Query Frame = 1
Query:   13 GAARNQKNRQERKHSLHEHAPSTEETVLIHKLYKEREMSRRNLDSVVVSPDETYFEATKLMHPARKNVHGKVFGGYIMREAFELGYLCA 279
            G  +NQK +++  +SL    P++EE   +H  Y  ++         + +  ET  +   LMH   +N+HGK+FGG++MREAFE+G+LCA
Sbjct:  207 GNKKNQKRKEKFTNSLEIKPPNSEEINYVHSFYLNKKSQDEKYSQNIKNISETSLKKNLLMHMQDRNLHGKIFGGFLMREAFEIGWLCA 295          
BLAST of mRNA_M-pyrifera_M_contig120600.4242.1 vs. uniprot
Match: A0A7C7XAT8_9PROT (Uncharacterized protein n=3 Tax=Proteobacteria TaxID=1224 RepID=A0A7C7XAT8_9PROT)

HSP 1 Score: 63.2 bits (152), Expect = 1.310e-9
Identity = 33/86 (38.37%), Postives = 53/86 (61.63%), Query Frame = 1
Query:   13 GAARNQKNRQERKHSLHEHAPSTEETVLIHKLYKEREMSRRNLDSVVVSPDETYFEATKLMHPARKNVHGKVFGGYIMREAFELGY 270
            G  R Q+ R   +++  +H P+ EE+V +H+L+    +  ++     V   ET  +AT LMHP  +N+H K+FGGY+MR+AFEL +
Sbjct:  179 GEQRQQQRRAMAQNNYLKHTPTAEESVRLHRLF----LRTKHQQITGVPIHETQRQATLLMHPQSRNIHNKIFGGYLMRQAFELAW 260          
BLAST of mRNA_M-pyrifera_M_contig120600.4242.1 vs. uniprot
Match: F2TXY5_SALR5 (HotDog ACOT-type domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2TXY5_SALR5)

HSP 1 Score: 63.2 bits (152), Expect = 1.330e-9
Identity = 31/83 (37.35%), Postives = 58/83 (69.88%), Query Frame = 1
Query:   37 RQERKHSLHEHAPSTEETVLIHKLY-KEREMSR-RNLDSVVVSPDETYFEATKLMHPARKNVHGKVFGGYIMREAFELGYLCA 279
            ++ER+ S+H   P+ EE +++H LY + ++ +R R LD++ +   +T  ++ ++ HP  +N+H  +FGG+IMREAFE+G++ A
Sbjct:  210 KREREQSVHRQPPTEEERLIVHDLYLRSKDTTRKRPLDTLWMV--DTQRQSMRMCHPIERNIHNSIFGGFIMREAFEIGWMTA 290          
BLAST of mRNA_M-pyrifera_M_contig120600.4242.1 vs. uniprot
Match: A0EB75_PARTE (Uncharacterized protein n=2 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0EB75_PARTE)

HSP 1 Score: 62.4 bits (150), Expect = 2.490e-9
Identity = 36/83 (43.37%), Postives = 48/83 (57.83%), Query Frame = 1
Query:   31 KNRQERKHSLHEHAPSTEETVLIHKLYKEREMSRRNLDSVVVSPDETYFEATKLMHPARKNVHGKVFGGYIMREAFELGYLCA 279
            K +Q++   L   APS EE   +HK +              ++ DET  E T LMH   +N+HGKVFGG++MREAFELG+L A
Sbjct:  228 KRKQQKDRGLDRKAPSQEEINELHKFFMNPPSD--------ITIDETQIEKTLLMHIQDRNLHGKVFGGFVMREAFELGWLNA 302          
BLAST of mRNA_M-pyrifera_M_contig120600.4242.1 vs. uniprot
Match: A0A316VCY4_9BASI (Uncharacterized protein n=1 Tax=Meira miltonrushii TaxID=1280837 RepID=A0A316VCY4_9BASI)

HSP 1 Score: 62.0 bits (149), Expect = 3.520e-9
Identity = 36/97 (37.11%), Postives = 59/97 (60.82%), Query Frame = 1
Query:   13 GAARNQKNRQERKHSLHEHAPSTEETVLIHKLY------KEREMSRRNLD--SVVVSPDETYFEATKLMHPARKNVHGKVFGGYIMREAFELGYLCA 279
            G A  Q+ R E + SL +  P+++E  L+H+L+      K + ++ ++LD  S  V  ++T   +   MHP ++NVH K+FGGY+MR A+EL Y+ A
Sbjct:  288 GQAHKQRKRFEAQTSLEKVPPTSDEATLLHQLWLAEEAKKSKAITDKSLDTESKSVYIEDTQLASVSFMHPQQRNVHMKIFGGYLMRSAYELAYMNA 384          
BLAST of mRNA_M-pyrifera_M_contig120600.4242.1 vs. uniprot
Match: G4TD44_SERID (Related to acyl-coa thioester hydrolase n=1 Tax=Serendipita indica (strain DSM 11827) TaxID=1109443 RepID=G4TD44_SERID)

HSP 1 Score: 61.2 bits (147), Expect = 6.520e-9
Identity = 32/73 (43.84%), Postives = 45/73 (61.64%), Query Frame = 1
Query:   55 SLHEHAPSTEETVLIHKLYKEREMSRRNLDSVVVSP-DETYFEATKLMHPARKNVHGKVFGGYIMREAFELGY 270
            SL +  P++EE  L+H LY +     +N D +   P  ET  E T  M+P ++N+  KVFGGY+MR A+ELGY
Sbjct:  279 SLDKKPPTSEEAALLHHLYLKYGNGTKNSDGLQPVPISETLLENTMQMYPQQRNIQSKVFGGYLMRLAYELGY 351          
BLAST of mRNA_M-pyrifera_M_contig120600.4242.1 vs. uniprot
Match: A0A0C9UIW8_SPHS4 (Unplaced genomic scaffold SPHSTscaffold_120, whole genome shotgun sequence n=1 Tax=Sphaerobolus stellatus (strain SS14) TaxID=990650 RepID=A0A0C9UIW8_SPHS4)

HSP 1 Score: 60.5 bits (145), Expect = 1.160e-8
Identity = 35/76 (46.05%), Postives = 46/76 (60.53%), Query Frame = 1
Query:   55 SLHEHAPSTEETVLIHKLYKER-EMSRRNLDSVVVSPDETYFEATKLMHPARKNVHGKVFGGYIMREAFELGYLCA 279
            SL    PSTEE   +H+LY    E S+RN  +  V  ++T  E   LM P  +NVH K+FGGY+MR A+ELG+  A
Sbjct:  177 SLDRVPPSTEEVGELHQLYLNYGENSKRNYHTERVWMEDTSLENCILMFPQERNVHSKIFGGYLMRLAYELGFTAA 252          
BLAST of mRNA_M-pyrifera_M_contig120600.4242.1 vs. uniprot
Match: A0A7S4HL79_9EUKA (Hypothetical protein n=2 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HL79_9EUKA)

HSP 1 Score: 59.7 bits (143), Expect = 2.180e-8
Identity = 28/69 (40.58%), Postives = 44/69 (63.77%), Query Frame = 1
Query:   73 PSTEETVLIHKLYKEREMSRRNLDSVVVSPDETYFEATKLMHPARKNVHGKVFGGYIMREAFELGYLCA 279
            P+ EE ++IH+L+  R+   +          ET F++T  MHP  +N+HG +FGGY+MR+AFE+ +L A
Sbjct:  204 PTPEERIVIHELFLARKNGAKERPL-----KETRFDSTIYMHPREQNIHGHIFGGYLMRKAFEIAFLTA 267          
BLAST of mRNA_M-pyrifera_M_contig120600.4242.1 vs. uniprot
Match: A0A8D8RZ80_9HEMI (Acyl-coenzyme A thioesterase 9, mitochondrial n=1 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D8RZ80_9HEMI)

HSP 1 Score: 59.7 bits (143), Expect = 2.250e-8
Identity = 35/95 (36.84%), Postives = 53/95 (55.79%), Query Frame = 1
Query:   10 TGAARNQKNRQERKHSLHEHAPSTEETVLIHKLYKER-EMSRRNLDSVVVSPDETYFEATKL-----MHPARKNVHGKVFGGYIMREAFELGYLC 276
            TG  R    + E   SL  H PST E  +IHK++ +  + S   L   ++ P   + EAT+      +HP  +N+H K+FGG++MR+A EL +LC
Sbjct:  240 TGLERTNMRKIESNESLLVHPPSTFEQQMIHKVFLDTIDKSNPLLGRRILPPYHVWMEATRQNSVIHLHPEERNLHNKIFGGFLMRQALELAWLC 334          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120600.4242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0TSN0_HEMAN3.910e-1142.70Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
A0A0V0R7H5_PSEPJ5.860e-1137.08Uncharacterized protein n=1 Tax=Pseudocohnilembus ... [more]
A0A7C7XAT8_9PROT1.310e-938.37Uncharacterized protein n=3 Tax=Proteobacteria Tax... [more]
F2TXY5_SALR51.330e-937.35HotDog ACOT-type domain-containing protein n=1 Tax... [more]
A0EB75_PARTE2.490e-943.37Uncharacterized protein n=2 Tax=Paramecium tetraur... [more]
A0A316VCY4_9BASI3.520e-937.11Uncharacterized protein n=1 Tax=Meira miltonrushii... [more]
G4TD44_SERID6.520e-943.84Related to acyl-coa thioester hydrolase n=1 Tax=Se... [more]
A0A0C9UIW8_SPHS41.160e-846.05Unplaced genomic scaffold SPHSTscaffold_120, whole... [more]
A0A7S4HL79_9EUKA2.180e-840.58Hypothetical protein n=2 Tax=Vannella sp. CB-2014 ... [more]
A0A8D8RZ80_9HEMI2.250e-836.84Acyl-coenzyme A thioesterase 9, mitochondrial n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120600contigM-pyrifera_M_contig120600:78..536 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score63.9
Seed ortholog evalue4.5e-08
Seed eggNOG ortholog946362.XP_004998419.1
Preferred nameACOT9
KEGG koko:K17361
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003986,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006139,GO:0006163,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009150,GO:0009259,GO:0009987,GO:0016289,GO:0016787,GO:0016788,GO:0016790,GO:0019637,GO:0019693,GO:0031974,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0035383,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043603,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0047617,GO:0051186,GO:0055086,GO:0070013,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564
EggNOG free text desc.thioesterase 9
EggNOG OGs38EDX@33154,COG1607@1,KOG2763@2759
COG Functional cat.I
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01004
Exons2
Model size279
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815725.58097-CDS-M-pyrifera_M_contig120600:77..2221622815725.58097-CDS-M-pyrifera_M_contig120600:77..222Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120600 78..222 +
1692277540.087168-CDS-M-pyrifera_M_contig120600:77..2221692277540.087168-CDS-M-pyrifera_M_contig120600:77..222Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120600 78..222 +
1622815725.5933483-CDS-M-pyrifera_M_contig120600:402..5361622815725.5933483-CDS-M-pyrifera_M_contig120600:402..536Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120600 403..536 +
1692277540.0998633-CDS-M-pyrifera_M_contig120600:402..5361692277540.0998633-CDS-M-pyrifera_M_contig120600:402..536Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120600 403..536 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120600.4242.1prot_M-pyrifera_M_contig120600.4242.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120600 78..536 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120600.4242.1

>prot_M-pyrifera_M_contig120600.4242.1 ID=prot_M-pyrifera_M_contig120600.4242.1|Name=mRNA_M-pyrifera_M_contig120600.4242.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=93bp
RELTGAARNQKNRQERKHSLHEHAPSTEETVLIHKLYKEREMSRRNLDSV
VVSPDETYFEATKLMHPARKNVHGKVFGGYIMREAFELGYLCA
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mRNA from alignment at M-pyrifera_M_contig120600:78..536+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120600.4242.1 ID=mRNA_M-pyrifera_M_contig120600.4242.1|Name=mRNA_M-pyrifera_M_contig120600.4242.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=459bp|location=Sequence derived from alignment at M-pyrifera_M_contig120600:78..536+ (Macrocystis pyrifera P11B4 male)
AGAGAGCTGACGGGGGCAGCGCGGAACCAGAAGAACCGACAGGAGCGTAA GCATTCGCTGCACGAACACGCGCCCTCCACGGAGGAGACGGTGCTCATTC ACAAGCTCTACAAAGAGCGGGAAATGAGCCGACGAAACCTCGACTGTCCC TCGAGAGCAATGGCAACGAACCACAGCGGAGATAGAGAGAGAGAAAGTGC GGGAGAGAGAGCGGGAGAGAGGGTGGGAGAGAGGGTGGGGGAGAGAGGAA GAGCCACAGAGGAGACTGAGAGAGCGAGAGAACGAGAGAGAGCGAGAGAG ACAGAAGGAGAGAGGGAGAAGAGAGCGGTGGTGGTGTCTCCTGACGAAAC GTACTTCGAGGCGACGAAGCTGATGCATCCAGCACGCAAGAACGTGCACG GCAAGGTGTTTGGCGGCTACATCATGCGCGAGGCATTCGAGCTGGGCTAC CTCTGTGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120600:78..536+

>mRNA_M-pyrifera_M_contig120600.4242.1 ID=mRNA_M-pyrifera_M_contig120600.4242.1|Name=mRNA_M-pyrifera_M_contig120600.4242.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig120600:78..536+ (Macrocystis pyrifera P11B4 male)
AGAGAGCTGACGGGGGCAGCGCGGAACCAGAAGAACCGACAGGAGCGTAA
GCATTCGCTGCACGAACACGCGCCCTCCACGGAGGAGACGGTGCTCATTC
ACAAGCTCTACAAAGAGCGGGAAATGAGCCGACGAAACCTCGACTAGAGA
GCTGACGGGGGCAGCGCGGAACCAGAAGAACCGACAGGAGCGTAAGCATT
CGCTGCACGAACACGCGCCCTCCACGGAGGAGACGGTGCTCATTCACAAG
CTCTACAAAGAGCGGGAAATGAGCCGACGAAACCTCGACTCGGTGGTGGT
GTCTCCTGACGAAACGTACTTCGAGGCGACGAAGCTGATGCATCCAGCAC
GCAAGAACGTGCACGGCAAGGTGTTTGGCGGCTACATCATGCGCGAGGCA
TTCGAGCTGGGCTACCTCTGTGCCCGGTGGTGGTGTCTCCTGACGAAACG
TACTTCGAGGCGACGAAGCTGATGCATCCAGCACGCAAGAACGTGCACGG
CAAGGTGTTTGGCGGCTACATCATGCGCGAGGCATTCGAGCTGGGCTACC
TCTGTGCC
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