mRNA_M-pyrifera_M_contig120568.4237.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120568.4237.1
Unique NamemRNA_M-pyrifera_M_contig120568.4237.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig120568.4237.1 vs. uniprot
Match: A0A813A6M8_9DINO (Cfap44 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813A6M8_9DINO)

HSP 1 Score: 150 bits (379), Expect = 5.810e-42
Identity = 69/96 (71.88%), Postives = 84/96 (87.50%), Query Frame = 1 
Query:    1 ERVILRAKAFAQEVYNVQFSPTTDGRLLTSGTGHVRFWRMAATFTGLKLQGAIGKFGKVELVDITALCELPDGKVLTGTERGSLLLWDGQFIQLEL 288
            E+V+LR+KAFAQEV+NV+FSPT++GRL TSG GH+RFWRMA TFTGLKLQG IGKFGKV+L D+    ELPDGKVL+G+E G+LLLWDG FI+ E+
Sbjct:  111 EKVVLRSKAFAQEVFNVKFSPTSEGRLTTSGMGHIRFWRMANTFTGLKLQGDIGKFGKVDLSDVDDFAELPDGKVLSGSESGNLLLWDGMFIKFEV 206
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BLAST of mRNA_M-pyrifera_M_contig120568.4237.1 vs. uniprot
Match: A0A7S4F6J2_CHRCT (Hypothetical protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F6J2_CHRCT)

HSP 1 Score: 140 bits (353), Expect = 1.560e-40
Identity = 64/96 (66.67%), Postives = 80/96 (83.33%), Query Frame = 1 
Query:    1 ERVILRAKAFAQEVYNVQFSPTTDGRLLTSGTGHVRFWRMAATFTGLKLQGAIGKFGKVELVDITALCELPDGKVLTGTERGSLLLWDGQFIQLEL 288
            E ++LR KAF+QEVY V FSP +DG L+TSGTGH+RFW+MA+TFTGLKLQG IGKFG VEL DI+   ELPDGKVL+G++ G+LLLW+G  I+ E+
Sbjct:   67 EMIVLRTKAFSQEVYRVTFSPRSDGALITSGTGHIRFWKMASTFTGLKLQGDIGKFGAVELSDISGYAELPDGKVLSGSDWGNLLLWEGNLIKCEV 162
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BLAST of mRNA_M-pyrifera_M_contig120568.4237.1 vs. uniprot
Match: F0Y702_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y702_AURAN)

HSP 1 Score: 140 bits (353), Expect = 5.990e-40
Identity = 64/96 (66.67%), Postives = 82/96 (85.42%), Query Frame = 1 
Query:    1 ERVILRAKAFAQEVYNVQFSPTTDGRLLTSGTGHVRFWRMAATFTGLKLQGAIGKFGKVELVDITALCELPDGKVLTGTERGSLLLWDGQFIQLEL 288
            E+++L++KAF QEVY+V+FSP  DGRL TSGTGH+RFW+MA+TFTGLKLQG IGKFGKVEL DI +  ELP+ +VL+ TE G+LLLW+G FI+L +
Sbjct:  107 EQMLLQSKAFGQEVYSVRFSPGDDGRLTTSGTGHIRFWKMASTFTGLKLQGDIGKFGKVELTDICSFVELPNNQVLSSTESGALLLWEGNFIKLRI 202
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BLAST of mRNA_M-pyrifera_M_contig120568.4237.1 vs. uniprot
Match: A0A7S0RZ93_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0RZ93_9CHLO)

HSP 1 Score: 139 bits (350), Expect = 2.300e-39
Identity = 64/96 (66.67%), Postives = 78/96 (81.25%), Query Frame = 1 
Query:    1 ERVILRAKAFAQEVYNVQFSPTTDGRLLTSGTGHVRFWRMAATFTGLKLQGAIGKFGKVELVDITALCELPDGKVLTGTERGSLLLWDGQFIQLEL 288
            E ++LR+KAF+Q+VY V+FSP  DG L TSGTGH+RFW+MAATFTGLKLQG IGKFG VEL D+ A  E+PDGKVL+ TE G LL+WDG  I++ L
Sbjct:   62 EAIVLRSKAFSQDVYTVKFSPYFDGNLTTSGTGHIRFWKMAATFTGLKLQGLIGKFGVVELSDVVAFVEMPDGKVLSSTETGELLMWDGGLIKVML 157
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BLAST of mRNA_M-pyrifera_M_contig120568.4237.1 vs. uniprot
Match: A0A6A5AEF6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AEF6_9STRA)

HSP 1 Score: 139 bits (349), Expect = 2.340e-39
Identity = 66/93 (70.97%), Postives = 75/93 (80.65%), Query Frame = 1 
Query:   10 ILRAKAFAQEVYNVQFSPTTDGRLLTSGTGHVRFWRMAATFTGLKLQGAIGKFGKVELVDITALCELPDGKVLTGTERGSLLLWDGQFIQLEL 288
            ILR KAF QEV+NVQF+P   G L TSGTGH+RFW+MA+TFTGLKLQG I KFGK EL DI A C LPD KVL+ TERG+LLLWDG FI+ E+
Sbjct:    1 ILRCKAFGQEVFNVQFAPNDGGFLTTSGTGHIRFWKMASTFTGLKLQGDIAKFGKSELSDIEAFCVLPDKKVLSSTERGALLLWDGNFIKCEI 93
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BLAST of mRNA_M-pyrifera_M_contig120568.4237.1 vs. uniprot
Match: A0A2R5GDY3_9STRA (Echinoderm microtubule-associated protein-like 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GDY3_9STRA)

HSP 1 Score: 147 bits (370), Expect = 5.880e-39
Identity = 69/96 (71.88%), Postives = 81/96 (84.38%), Query Frame = 1 
Query:    1 ERVILRAKAFAQEVYNVQFSPTTDGRLLTSGTGHVRFWRMAATFTGLKLQGAIGKFGKVELVDITALCELPDGKVLTGTERGSLLLWDGQFIQLEL 288
            ER+ILR KAFAQE+YNV F+P  DG L TSG GH+RFW+MA TFTGLKLQG IGKFGKVEL D++A   +PDGKVL+G+E GSLLLWDG FI+LE+
Sbjct:  156 ERIILRNKAFAQEIYNVSFAPGKDGFLTTSGLGHIRFWKMADTFTGLKLQGDIGKFGKVELSDVSAYAVMPDGKVLSGSESGSLLLWDGNFIKLEV 251
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BLAST of mRNA_M-pyrifera_M_contig120568.4237.1 vs. uniprot
Match: A0A7S2S393_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S393_9STRA)

HSP 1 Score: 137 bits (344), Expect = 1.530e-38
Identity = 63/96 (65.62%), Postives = 76/96 (79.17%), Query Frame = 1 
Query:    1 ERVILRAKAFAQEVYNVQFSPTTDGRLLTSGTGHVRFWRMAATFTGLKLQGAIGKFGKVELVDITALCELPDGKVLTGTERGSLLLWDGQFIQLEL 288
            ER+ L  KAF Q+V+ V+FS    GRL+TSGTGH+RFWRMA TFTGLKLQGAIGKFGKVEL D+    ELPDGKVL+ TE G+LL+W+G FI+  +
Sbjct:   88 ERITLHTKAFGQDVFKVKFSSDDPGRLITSGTGHIRFWRMARTFTGLKLQGAIGKFGKVELSDVEDFAELPDGKVLSSTESGALLVWEGNFIKCRI 183
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BLAST of mRNA_M-pyrifera_M_contig120568.4237.1 vs. uniprot
Match: A0A1W0A4F3_9STRA (Phytophthora infestans avirulence-associated protein 3.4F-A n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A4F3_9STRA)

HSP 1 Score: 144 bits (364), Expect = 3.780e-38
Identity = 68/96 (70.83%), Postives = 80/96 (83.33%), Query Frame = 1 
Query:    1 ERVILRAKAFAQEVYNVQFSPTTDGRLLTSGTGHVRFWRMAATFTGLKLQGAIGKFGKVELVDITALCELPDGKVLTGTERGSLLLWDGQFIQLEL 288
            E++ILR KAF QEV+NVQF+P  +G L TSGTGH+RFW+MA+TFTGLKLQG IGKFGK EL DI A C LPD KVL+ TERG+LLLWDG FI+ E+
Sbjct:  158 EQMILRCKAFGQEVFNVQFAPNDNGFLTTSGTGHIRFWKMASTFTGLKLQGDIGKFGKSELSDIEAFCVLPDKKVLSSTERGALLLWDGNFIKCEI 253
[Close]
BLAST of mRNA_M-pyrifera_M_contig120568.4237.1 vs. uniprot
Match: A0A813A5E0_9DINO (CFAP44 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813A5E0_9DINO)

HSP 1 Score: 140 bits (354), Expect = 6.710e-38
Identity = 64/94 (68.09%), Postives = 81/94 (86.17%), Query Frame = 1 
Query:    1 ERVILRAKAFAQEVYNVQFSPTTDGRLLTSGTGHVRFWRMAATFTGLKLQGAIGKFGKVELVDITALCELPDGKVLTGTERGSLLLWDGQFIQL 282
            ER++L+AKAFAQ+V+ V+FS +  GRL TSGTGH+RFWRMA TFTGLKLQG IGKFG+V+L D+TA  E+PDGKV++G+E G LLLW+G FI+L
Sbjct:  249 ERLLLKAKAFAQDVFTVRFSQSDAGRLTTSGTGHIRFWRMAQTFTGLKLQGVIGKFGRVDLSDVTAFAEMPDGKVVSGSEAGRLLLWEGGFIKL 342
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BLAST of mRNA_M-pyrifera_M_contig120568.4237.1 vs. uniprot
Match: A0A1V9ZU71_9STRA (Phytophthora infestans avirulence-associated protein 3.4F-A n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZU71_9STRA)

HSP 1 Score: 144 bits (362), Expect = 7.040e-38
Identity = 69/96 (71.88%), Postives = 79/96 (82.29%), Query Frame = 1 
Query:    1 ERVILRAKAFAQEVYNVQFSPTTDGRLLTSGTGHVRFWRMAATFTGLKLQGAIGKFGKVELVDITALCELPDGKVLTGTERGSLLLWDGQFIQLEL 288
            E+ ILR KAF QEV+NVQF+P  +G L TSGTGHVRFW+MA+TFTGLKLQG IGKFGK EL DI A C LPD KVL+ TERG+LLLWDG FI+ E+
Sbjct:  159 EQTILRCKAFGQEVFNVQFAPHDNGFLTTSGTGHVRFWKMASTFTGLKLQGDIGKFGKSELSDIEAFCVLPDKKVLSSTERGALLLWDGNFIKCEI 254
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120568.4237.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A813A6M8_9DINO5.810e-4271.88Cfap44 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=... [more]
A0A7S4F6J2_CHRCT1.560e-4066.67Hypothetical protein (Fragment) n=1 Tax=Chrysotila... [more]
F0Y702_AURAN5.990e-4066.67Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7S0RZ93_9CHLO2.300e-3966.67Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A6A5AEF6_9STRA2.340e-3970.97Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A2R5GDY3_9STRA5.880e-3971.88Echinoderm microtubule-associated protein-like 1 n... [more]
A0A7S2S393_9STRA1.530e-3865.63Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A1W0A4F3_9STRA3.780e-3870.83Phytophthora infestans avirulence-associated prote... [more]
A0A813A5E0_9DINO6.710e-3868.09CFAP44 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=... [more]
A0A1V9ZU71_9STRA7.040e-3871.88Phytophthora infestans avirulence-associated prote... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120568contigM-pyrifera_M_contig120568:245..532 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.0
Seed ortholog evalue9.2e-33
Seed eggNOG ortholog112098.XP_008607179.1
Preferred nameCFAP44
Hectar predicted targeting categoryother localisation
GOsGO:0001539,GO:0006928,GO:0008150,GO:0009987,GO:0040011,GO:0048870,GO:0051179,GO:0051674,GO:0060285
EggNOG free text desc.microtubule binding
EggNOG OGsCOG2319@1,KOG2106@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size288
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815725.2577155-CDS-M-pyrifera_M_contig120568:244..5321622815725.2577155-CDS-M-pyrifera_M_contig120568:244..532Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120568 245..532 -
1692277539.8722992-CDS-M-pyrifera_M_contig120568:244..5321692277539.8722992-CDS-M-pyrifera_M_contig120568:244..532Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120568 245..532 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120568.4237.1prot_M-pyrifera_M_contig120568.4237.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120568 245..532 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120568.4237.1

>prot_M-pyrifera_M_contig120568.4237.1 ID=prot_M-pyrifera_M_contig120568.4237.1|Name=mRNA_M-pyrifera_M_contig120568.4237.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=96bp
ERVILRAKAFAQEVYNVQFSPTTDGRLLTSGTGHVRFWRMAATFTGLKLQ
GAIGKFGKVELVDITALCELPDGKVLTGTERGSLLLWDGQFIQLEL
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mRNA from alignment at M-pyrifera_M_contig120568:245..532-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120568.4237.1 ID=mRNA_M-pyrifera_M_contig120568.4237.1|Name=mRNA_M-pyrifera_M_contig120568.4237.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=288bp|location=Sequence derived from alignment at M-pyrifera_M_contig120568:245..532- (Macrocystis pyrifera P11B4 male)
GAGCGCGTGATTCTGCGCGCGAAAGCCTTTGCGCAGGAGGTGTACAACGT
GCAGTTCTCCCCCACCACCGATGGGCGACTGCTCACGTCCGGCACAGGCC
ACGTGCGCTTCTGGCGCATGGCTGCGACGTTCACCGGGCTGAAGCTACAG
GGCGCCATCGGCAAGTTCGGCAAGGTGGAGCTGGTGGACATCACCGCGCT
GTGCGAGCTTCCCGACGGCAAGGTGCTCACCGGAACCGAGCGTGGATCGC
TGCTGCTTTGGGACGGACAGTTCATCCAGCTGGAGCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120568:245..532-

>mRNA_M-pyrifera_M_contig120568.4237.1 ID=mRNA_M-pyrifera_M_contig120568.4237.1|Name=mRNA_M-pyrifera_M_contig120568.4237.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=576bp|location=Sequence derived from alignment at M-pyrifera_M_contig120568:245..532- (Macrocystis pyrifera P11B4 male)
GAGCGCGTGATTCTGCGCGCGAAAGCCTTTGCGCAGGAGGTGTACAACGT
GCAGTTCTCCCCCACCACCGATGGGCGACTGCTCACGTCCGGCACAGGCC
ACGTGCGCTTCTGGCGCATGGCTGCGACGTTCACCGGGCTGAAGCTACAG
GGCGCCATCGGCAAGTTCGGCAAGGTGGAGCTGGTGGACATCACCGCGCT
GTGCGAGCTTCCCGACGGCAAGGTGCTCACCGGAACCGAGCGTGGATCGC
TGCTGCTTTGGGACGGACAGTTCATCCAGCTGGAGCTGGAGCGCGTGATT
CTGCGCGCGAAAGCCTTTGCGCAGGAGGTGTACAACGTGCAGTTCTCCCC
CACCACCGATGGGCGACTGCTCACGTCCGGCACAGGCCACGTGCGCTTCT
GGCGCATGGCTGCGACGTTCACCGGGCTGAAGCTACAGGGCGCCATCGGC
AAGTTCGGCAAGGTGGAGCTGGTGGACATCACCGCGCTGTGCGAGCTTCC
CGACGGCAAGGTGCTCACCGGAACCGAGCGTGGATCGCTGCTGCTTTGGG
ACGGACAGTTCATCCAGCTGGAGCTG
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