mRNA_M-pyrifera_M_contig120547.4231.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120547.4231.1
Unique NamemRNA_M-pyrifera_M_contig120547.4231.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig120547.4231.1 vs. uniprot
Match: A0A8H9WDS9_9GAMM (Multidrug transporter n=1 Tax=Cycloclasticus sp. TaxID=2024830 RepID=A0A8H9WDS9_9GAMM)

HSP 1 Score: 197 bits (502), Expect = 1.840e-61
Identity = 104/160 (65.00%), Postives = 126/160 (78.75%), Query Frame = 1
Query:    1 AEFLFSGGQVGLTEALNTELQKTNVNIMIAITIVIFFCVIALYRSVKVAIILLVSLAAANAITYAFMAWKGVGLNISSLPLAALGVGLGVDYGIYMIDRIKEEYRKCG--DMIDAMHRALMTSGNAIVITALSMTAPLIPWIFFSDLRFHAEISMLLSLV 474
            A FL+ GGQVG+ EALN E+  +N+  MIAI  VIFFC++  YRSV   +ILL SLA AN++TYAFMAWK VGLN+S+LPLAALGVGLGVDYGIYMIDRIKEEY+K     + +A+H A +T+GNAI ITA++M APLIPW   S LRF AE+ MLLS+V
Sbjct:   32 AAFLYMGGQVGIVEALNEEIVSSNIKTMIAIAFVIFFCIVLYYRSVTTGLILLFSLATANSLTYAFMAWKEVGLNVSTLPLAALGVGLGVDYGIYMIDRIKEEYQKLDVKSVHEAVHHAFLTAGNAIFITAVTMIAPLIPWAVASPLRFQAEMGMLLSMV 191          
BLAST of mRNA_M-pyrifera_M_contig120547.4231.1 vs. uniprot
Match: A0A7C7WE55_9GAMM (Multidrug transporter n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C7WE55_9GAMM)

HSP 1 Score: 205 bits (521), Expect = 5.070e-59
Identity = 106/159 (66.67%), Postives = 129/159 (81.13%), Query Frame = 1
Query:    1 AEFLFSGGQVGLTEALNTELQKTNVNIMIAITIVIFFCVIALYRSVKVAIILLVSLAAANAITYAFMAWKGVGLNISSLPLAALGVGLGVDYGIYMIDRIKEEYRKCGDMI-DAMHRALMTSGNAIVITALSMTAPLIPWIFFSDLRFHAEISMLLSLV 474
            A+FL+SGGQ+G+ EALN E+ ++N+ IMIAI IVI  C++  YRS  VA ILL SLA AN++TYAFMAWK VGLN+S+LPLAALGVGLGVDYGIYM+DRIKEEY K  D I DA+HRA +TSGNAI +TA++M  PL+PW F S LRF +E+ MLL LV
Sbjct:  585 ADFLYSGGQIGIVEALNREITESNIKIMIAIAIVIGTCILIYYRSPTVAFILLFSLATANSLTYAFMAWKEVGLNVSTLPLAALGVGLGVDYGIYMVDRIKEEYAKATDTIADAIHRAFLTSGNAIFVTAITMIGPLLPWAFMSPLRFQSEMGMLLGLV 743          
BLAST of mRNA_M-pyrifera_M_contig120547.4231.1 vs. uniprot
Match: A0A836X8L7_9GAMM (Multidrug transporter n=1 Tax=Thiotrichaceae bacterium TaxID=2030882 RepID=A0A836X8L7_9GAMM)

HSP 1 Score: 204 bits (519), Expect = 7.740e-59
Identity = 105/159 (66.04%), Postives = 130/159 (81.76%), Query Frame = 1
Query:    1 AEFLFSGGQVGLTEALNTELQKTNVNIMIAITIVIFFCVIALYRSVKVAIILLVSLAAANAITYAFMAWKGVGLNISSLPLAALGVGLGVDYGIYMIDRIKEEYRKCGDMI-DAMHRALMTSGNAIVITALSMTAPLIPWIFFSDLRFHAEISMLLSLV 474
            A+FL+SGGQVG+ EALN E+ K+N+NIMIAI  VI  C++  YRS+ VA+ILL SLA ANA+TYAFMAWKGVGLN+S+LPL ALGVGLGVDYGIYM+DRIKEEY K  + + +A+H+A  TSGNAI ITA++M  PL+PW F S LRF +E+ MLL +V
Sbjct:  585 ADFLYSGGQVGIVEALNAEITKSNLNIMIAIVFVIGTCIVLYYRSLVVALILLTSLATANALTYAFMAWKGVGLNVSTLPLTALGVGLGVDYGIYMVDRIKEEYGKNAECVYEAVHQAFRTSGNAIFITAVTMIGPLLPWAFMSPLRFQSEMGMLLGVV 743          
BLAST of mRNA_M-pyrifera_M_contig120547.4231.1 vs. uniprot
Match: S5TIZ9_9GAMM (Exporters of the RND superfamily n=9 Tax=Gammaproteobacteria TaxID=1236 RepID=S5TIZ9_9GAMM)

HSP 1 Score: 203 bits (516), Expect = 2.160e-58
Identity = 106/160 (66.25%), Postives = 129/160 (80.62%), Query Frame = 1
Query:    1 AEFLFSGGQVGLTEALNTELQKTNVNIMIAITIVIFFCVIALYRSVKVAIILLVSLAAANAITYAFMAWKGVGLNISSLPLAALGVGLGVDYGIYMIDRIKEEYRKCG--DMIDAMHRALMTSGNAIVITALSMTAPLIPWIFFSDLRFHAEISMLLSLV 474
            A+FL+ GGQVG+ EALN E+  +NV  M+AI  VIFFC++  YRSV   +ILL SLA AN++TYAFMAWK VGLN+S+LPLAALGVGLGVDYGIYMIDRIKEEY+  G  D+ +A+H+A +TSGNAI ITA++M APLIPW   S LRF AE+ MLL+LV
Sbjct:  585 AKFLYMGGQVGIVEALNEEIVNSNVKTMVAIAFVIFFCIVLYYRSVTTGLILLFSLATANSLTYAFMAWKEVGLNVSTLPLAALGVGLGVDYGIYMIDRIKEEYKNLGIKDVHEAIHQAFLTSGNAIFITAVTMIAPLIPWAVASPLRFQAEMGMLLALV 744          
BLAST of mRNA_M-pyrifera_M_contig120547.4231.1 vs. uniprot
Match: A0A2A4WJ78_9GAMM (Multidrug transporter n=2 Tax=Piscirickettsiaceae TaxID=135616 RepID=A0A2A4WJ78_9GAMM)

HSP 1 Score: 197 bits (502), Expect = 2.050e-56
Identity = 103/160 (64.38%), Postives = 128/160 (80.00%), Query Frame = 1
Query:    1 AEFLFSGGQVGLTEALNTELQKTNVNIMIAITIVIFFCVIALYRSVKVAIILLVSLAAANAITYAFMAWKGVGLNISSLPLAALGVGLGVDYGIYMIDRIKEEYRKCG--DMIDAMHRALMTSGNAIVITALSMTAPLIPWIFFSDLRFHAEISMLLSLV 474
            A+FL+ GGQVG+ EALN E+ ++NV  M+AI  VIFFC++  YRSV   +ILL SLA AN++TYAFMAWK VGLN+S+LPLAALGVGLGVDYGIYMIDRIKEEY+K     + +A+H A +T+GNAI ITA++M APLIPW   S LRF AE+ MLL++V
Sbjct:  585 AKFLYMGGQVGIVEALNEEIVRSNVKTMVAIAFVIFFCIVLYYRSVTTGLILLFSLATANSLTYAFMAWKEVGLNVSTLPLAALGVGLGVDYGIYMIDRIKEEYQKLEVKSVHEAVHHAFLTAGNAIFITAVTMIAPLIPWAVASPLRFQAEMGMLLAMV 744          
BLAST of mRNA_M-pyrifera_M_contig120547.4231.1 vs. uniprot
Match: A0A7V2WE69_9GAMM (Multidrug transporter n=1 Tax=Aeromonadales bacterium TaxID=2268177 RepID=A0A7V2WE69_9GAMM)

HSP 1 Score: 196 bits (499), Expect = 5.960e-56
Identity = 102/159 (64.15%), Postives = 130/159 (81.76%), Query Frame = 1
Query:    1 AEFLFSGGQVGLTEALNTELQKTNVNIMIAITIVIFFCVIALYRSVKVAIILLVSLAAANAITYAFMAWKGVGLNISSLPLAALGVGLGVDYGIYMIDRIKEEYRKCG-DMIDAMHRALMTSGNAIVITALSMTAPLIPWIFFSDLRFHAEISMLLSLV 474
            A+FLFSGGQVGLTEALN E+ ++N+ IMIAI +VI   +   YRS+ V +ILL SLA ANA+TYAFMAWKGVGLN+S+LPL+ALGVGLGVDYGIYM+DRIKEE  K G +M++A+H A +++GNAI ITA++M  PL+PW F S LRF +E+ +LL +V
Sbjct:  587 ADFLFSGGQVGLTEALNHEIAESNLKIMIAIVLVIAVSIGIYYRSLVVGLILLFSLATANALTYAFMAWKGVGLNVSTLPLSALGVGLGVDYGIYMVDRIKEELAKAGGNMVEAIHHAFLSAGNAIFITAVTMIGPLLPWAFMSPLRFQSEMGLLLGVV 745          
BLAST of mRNA_M-pyrifera_M_contig120547.4231.1 vs. uniprot
Match: A0A501PK40_9PROT (Multidrug transporter n=1 Tax=Emcibacter nanhaiensis TaxID=1505037 RepID=A0A501PK40_9PROT)

HSP 1 Score: 184 bits (466), Expect = 3.030e-51
Identity = 92/158 (58.23%), Postives = 126/158 (79.75%), Query Frame = 1
Query:    1 AEFLFSGGQVGLTEALNTELQKTNVNIMIAITIVIFFCVIALYRSVKVAIILLVSLAAANAITYAFMAWKGVGLNISSLPLAALGVGLGVDYGIYMIDRIKEEYRKCGDMIDAMHRALMTSGNAIVITALSMTAPLIPWIFFSDLRFHAEISMLLSLV 474
            A+FLF+GGQ+G+ +A+N E++ +N  ++IAI +VI FCV  LYRSV V+++L+ SLAAAN ITY+FMA+KG+GL++++LPL ALGVGLGVDYGIYM+DRI+EE R      +A+  A+ TSGNAI +TA++M  PLIPW  FS LRF AE+ +LL +V
Sbjct:  581 AKFLFAGGQIGIAKAVNDEIRASNNTVLIAIVLVITFCVFVLYRSVSVSLVLIASLAAANFITYSFMAFKGIGLSLNTLPLTALGVGLGVDYGIYMLDRIREEARVHDRHFEAVRGAIRTSGNAIFVTAMTMVLPLIPWFLFSALRFQAEMGLLLGMV 738          
BLAST of mRNA_M-pyrifera_M_contig120547.4231.1 vs. uniprot
Match: A0A2G2G1T2_9PROT (Multidrug transporter n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2G2G1T2_9PROT)

HSP 1 Score: 181 bits (458), Expect = 4.020e-50
Identity = 88/158 (55.70%), Postives = 122/158 (77.22%), Query Frame = 1
Query:    1 AEFLFSGGQVGLTEALNTELQKTNVNIMIAITIVIFFCVIALYRSVKVAIILLVSLAAANAITYAFMAWKGVGLNISSLPLAALGVGLGVDYGIYMIDRIKEEYRKCGDMIDAMHRALMTSGNAIVITALSMTAPLIPWIFFSDLRFHAEISMLLSLV 474
            AEFL++GGQ+G+ +ALN E++ +N  +M+AI  VI  CV  LYRSV + ++L++SLA AN ITYAFMA+KG+GL++++LPL ALG+GLGVDYGIYM+DRI+EE        +A+  A+ TSGNAI +TA++M  PL+PW  FS LRF AE+ +LL +V
Sbjct:  581 AEFLYAGGQIGIAQALNDEIRDSNTKVMLAIVAVIAVCVFILYRSVTIGLVLILSLAVANFITYAFMAFKGIGLSVNTLPLTALGIGLGVDYGIYMLDRIREESGLHSSNYEAVREAIKTSGNAIFVTAMTMVLPLVPWFMFSTLRFQAEMGLLLGMV 738          
BLAST of mRNA_M-pyrifera_M_contig120547.4231.1 vs. uniprot
Match: UPI001414FAB7 (efflux RND transporter permease subunit n=1 Tax=Zavarzinia compransoris TaxID=1264899 RepID=UPI001414FAB7)

HSP 1 Score: 143 bits (360), Expect = 2.570e-38
Identity = 75/158 (47.47%), Postives = 112/158 (70.89%), Query Frame = 1
Query:    1 AEFLFSGGQVGLTEALNTELQKTNVNIMIAITIVIFFCVIALYRSVKVAIILLVSLAAANAITYAFMAWKGVGLNISSLPLAALGVGLGVDYGIYMIDRIKEEYRKCGDMIDAMHRALMTSGNAIVITALSMTAPLIPWIFFSDLRFHAEISMLLSLV 474
            A+ L +GGQVG+ EA+NTE++ T   ++IAI + I  C+   +RS+ V  +L+ +L  +  +T +FM   G+GLNI++LPLAALGVGL  DYGIY++ R++E   +     DA+  AL TSGNA++ITA++M AP++PW FFS LRF AE+ +L ++V
Sbjct:  173 AKLLVAGGQVGIAEAVNTEIETTKDAVLIAIVLFIAGCIFLAFRSLWVTAVLVFALLTSTFMTDSFMYLMGIGLNINTLPLAALGVGLAADYGIYILHRVREALAEGESHEDAIRHALQTSGNAVMITAITMIAPVMPWAFFSALRFQAEMGVLHAVV 330          
BLAST of mRNA_M-pyrifera_M_contig120547.4231.1 vs. uniprot
Match: A0A317DUF7_9PROT (MMPL domain-containing protein n=2 Tax=Zavarzinia aquatilis TaxID=2211142 RepID=A0A317DUF7_9PROT)

HSP 1 Score: 140 bits (352), Expect = 1.240e-37
Identity = 73/158 (46.20%), Postives = 110/158 (69.62%), Query Frame = 1
Query:    1 AEFLFSGGQVGLTEALNTELQKTNVNIMIAITIVIFFCVIALYRSVKVAIILLVSLAAANAITYAFMAWKGVGLNISSLPLAALGVGLGVDYGIYMIDRIKEEYRKCGDMIDAMHRALMTSGNAIVITALSMTAPLIPWIFFSDLRFHAEISMLLSLV 474
            A+ L +GGQVG+ EA+N E++ T   +++AI + I  C+   +RS+ V  +L+ +L  +  +T  FM   G+GLNI++LPLAALGVGL  DYGIY++ R++E   +      A+H AL TSGNA++ITA++M AP++PW FFS LRF AE+ +L ++V
Sbjct:  120 AKLLVAGGQVGIAEAINAEIEDTKDAVLVAIVVFIAGCIFVAFRSLWVTGVLIFALLTSTFMTDTFMYLMGIGLNINTLPLAALGVGLAADYGIYILHRVREALAEGEPWEVAVHHALTTSGNAVMITAITMIAPVMPWAFFSALRFQAEMGVLHAVV 277          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120547.4231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8H9WDS9_9GAMM1.840e-6165.00Multidrug transporter n=1 Tax=Cycloclasticus sp. T... [more]
A0A7C7WE55_9GAMM5.070e-5966.67Multidrug transporter n=1 Tax=Gammaproteobacteria ... [more]
A0A836X8L7_9GAMM7.740e-5966.04Multidrug transporter n=1 Tax=Thiotrichaceae bacte... [more]
S5TIZ9_9GAMM2.160e-5866.25Exporters of the RND superfamily n=9 Tax=Gammaprot... [more]
A0A2A4WJ78_9GAMM2.050e-5664.38Multidrug transporter n=2 Tax=Piscirickettsiaceae ... [more]
A0A7V2WE69_9GAMM5.960e-5664.15Multidrug transporter n=1 Tax=Aeromonadales bacter... [more]
A0A501PK40_9PROT3.030e-5158.23Multidrug transporter n=1 Tax=Emcibacter nanhaiens... [more]
A0A2G2G1T2_9PROT4.020e-5055.70Multidrug transporter n=2 Tax=Alphaproteobacteria ... [more]
UPI001414FAB72.570e-3847.47efflux RND transporter permease subunit n=1 Tax=Za... [more]
A0A317DUF7_9PROT1.240e-3746.20MMPL domain-containing protein n=2 Tax=Zavarzinia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120547contigM-pyrifera_M_contig120547:63..536 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score201.1
Seed ortholog evalue4e-49
Seed eggNOG ortholog1198232.CYCME_2557
KEGG koko:K07003
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.Exporters of the RND superfamily
EggNOG OGs1MUE1@1224,1RN01@1236,COG1033@1,COG1033@2
COG Functional cat.S
Best tax levelGammaproteobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size474
Cds size474
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815724.982726-CDS-M-pyrifera_M_contig120547:62..5361622815724.982726-CDS-M-pyrifera_M_contig120547:62..536Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120547 63..536 +
1692277539.7748291-CDS-M-pyrifera_M_contig120547:62..5361692277539.7748291-CDS-M-pyrifera_M_contig120547:62..536Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120547 63..536 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120547.4231.1prot_M-pyrifera_M_contig120547.4231.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120547 63..536 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120547.4231.1

>prot_M-pyrifera_M_contig120547.4231.1 ID=prot_M-pyrifera_M_contig120547.4231.1|Name=mRNA_M-pyrifera_M_contig120547.4231.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=158bp
AEFLFSGGQVGLTEALNTELQKTNVNIMIAITIVIFFCVIALYRSVKVAI
ILLVSLAAANAITYAFMAWKGVGLNISSLPLAALGVGLGVDYGIYMIDRI
KEEYRKCGDMIDAMHRALMTSGNAIVITALSMTAPLIPWIFFSDLRFHAE
ISMLLSLV
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mRNA from alignment at M-pyrifera_M_contig120547:63..536+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120547.4231.1 ID=mRNA_M-pyrifera_M_contig120547.4231.1|Name=mRNA_M-pyrifera_M_contig120547.4231.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig120547:63..536+ (Macrocystis pyrifera P11B4 male)
GCTGAATTCCTGTTTTCAGGTGGTCAGGTTGGCCTGACTGAAGCACTGAA TACTGAACTACAGAAGACTAATGTGAACATTATGATCGCTATTACGATCG TCATTTTCTTCTGTGTCATCGCTTTATACAGATCTGTCAAAGTTGCAATC ATTCTTCTCGTTAGTCTGGCTGCTGCCAACGCTATCACTTATGCGTTCAT GGCGTGGAAAGGCGTGGGTTTGAACATCAGTAGTCTACCTCTGGCAGCAT TGGGAGTGGGCCTGGGAGTCGATTATGGCATCTATATGATCGACCGTATC AAGGAAGAGTACCGCAAGTGTGGGGATATGATCGACGCAATGCATAGAGC CTTGATGACTTCCGGAAATGCAATTGTCATAACTGCACTATCGATGACTG CGCCTTTAATTCCCTGGATTTTCTTTTCCGACCTTCGCTTTCATGCGGAG ATCAGCATGCTCCTCTCTCTCGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120547:63..536+

>mRNA_M-pyrifera_M_contig120547.4231.1 ID=mRNA_M-pyrifera_M_contig120547.4231.1|Name=mRNA_M-pyrifera_M_contig120547.4231.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=948bp|location=Sequence derived from alignment at M-pyrifera_M_contig120547:63..536+ (Macrocystis pyrifera P11B4 male)
GCTGAATTCCTGTTTTCAGGTGGTCAGGTTGGCCTGACTGAAGCACTGAA
TACTGAACTACAGAAGACTAATGTGAACATTATGATCGCTATTACGATCG
TCATTTTCTTCTGTGTCATCGCTTTATACAGATCTGTCAAAGTTGCAATC
ATTCTTCTCGTTAGTCTGGCTGCTGCCAACGCTATCACTTATGCGTTCAT
GGCGTGGAAAGGCGTGGGTTTGAACATCAGTAGTCTACCTCTGGCAGCAT
TGGGAGTGGGCCTGGGAGTCGATTATGGCATCTATATGATCGACCGTATC
AAGGAAGAGTACCGCAAGTGTGGGGATATGATCGACGCAATGCATAGAGC
CTTGATGACTTCCGGAAATGCAATTGTCATAACTGCACTATCGATGACTG
CGCCTTTAATTCCCTGGATTTTCTTTTCCGACCTTCGCTTTCATGCGGAG
ATCAGCATGCTCCTCTCTCTCGTGGCTGAATTCCTGTTTTCAGGTGGTCA
GGTTGGCCTGACTGAAGCACTGAATACTGAACTACAGAAGACTAATGTGA
ACATTATGATCGCTATTACGATCGTCATTTTCTTCTGTGTCATCGCTTTA
TACAGATCTGTCAAAGTTGCAATCATTCTTCTCGTTAGTCTGGCTGCTGC
CAACGCTATCACTTATGCGTTCATGGCGTGGAAAGGCGTGGGTTTGAACA
TCAGTAGTCTACCTCTGGCAGCATTGGGAGTGGGCCTGGGAGTCGATTAT
GGCATCTATATGATCGACCGTATCAAGGAAGAGTACCGCAAGTGTGGGGA
TATGATCGACGCAATGCATAGAGCCTTGATGACTTCCGGAAATGCAATTG
TCATAACTGCACTATCGATGACTGCGCCTTTAATTCCCTGGATTTTCTTT
TCCGACCTTCGCTTTCATGCGGAGATCAGCATGCTCCTCTCTCTCGTG
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