mRNA_M-pyrifera_M_contig120457.4220.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120457.4220.1
Unique NamemRNA_M-pyrifera_M_contig120457.4220.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig120457.4220.1 vs. uniprot
Match: A0A3D3REX0_9PLAN (Uncharacterized protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A3D3REX0_9PLAN)

HSP 1 Score: 239 bits (609), Expect = 2.130e-73
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 1 
Query:    1 MHNLEKKLVDFLEAGTNPSLAMIGGIDVLNNVIPEIGVSPLLPEFVRIVINSDESIESEDGWRFICGTLSICKNGIAMRECVDLLDQFISLDSKADDQILESYLNIAIDKTNESLARAATL 363
            MHNLEKKLVDFLEAGTNPSLAMIGGIDVLNNVIPEIGVSPLLPEFVRIVINSDESIESEDGWRFICGTLSICKNGIAMRECVDLLDQFISLDSKADDQILESYLNIAIDKTNESLARAATL
Sbjct:    1 MHNLEKKLVDFLEAGTNPSLAMIGGIDVLNNVIPEIGVSPLLPEFVRIVINSDESIESEDGWRFICGTLSICKNGIAMRECVDLLDQFISLDSKADDQILESYLNIAIDKTNESLARAATL 121
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BLAST of mRNA_M-pyrifera_M_contig120457.4220.1 vs. uniprot
Match: A0A517RP89_9PLAN (Uncharacterized protein n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RP89_9PLAN)

HSP 1 Score: 71.6 bits (174), Expect = 4.100e-12
Identity = 43/121 (35.54%), Postives = 63/121 (52.07%), Query Frame = 1 
Query:    7 NLEKKLVDFLEAGTNPSLAMIGGIDVLNNVIPEIGVSPLLPEFVRIVINSDESIES--EDGWRFICGTLSICKNGIAMRECVDLLDQFISLDSKADDQILESYLNIAIDKTNESLARAATL 363
            ++E K+VD LE G  P +   G +D L      IG SPLLPEF+ +V+      E   +D W+FI  TL  C  G A+ E VDL+D+     +K   ++   Y+ I     +  +AR+A L
Sbjct:    6 SIENKMVDILETGAEPKIINFGSLDELLGSSELIGSSPLLPEFILMVLEDPCRPEECLDDHWKFIEKTLPFCVKGSALAEIVDLIDRA----NKQSKELFHVYMQIFSKSDSSIVARSAAL 122
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120457.4220.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A3D3REX0_9PLAN2.130e-73100.00Uncharacterized protein n=2 Tax=Gimesia TaxID=1649... [more]
A0A517RP89_9PLAN4.100e-1235.54Uncharacterized protein n=1 Tax=Gimesia alba TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120457contigM-pyrifera_M_contig120457:2..364 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size363
Cds size363
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815724.306384-CDS-M-pyrifera_M_contig120457:1..3641622815724.306384-CDS-M-pyrifera_M_contig120457:1..364Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120457 2..364 -
1692277539.3674076-CDS-M-pyrifera_M_contig120457:1..3641692277539.3674076-CDS-M-pyrifera_M_contig120457:1..364Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120457 2..364 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120457.4220.1prot_M-pyrifera_M_contig120457.4220.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120457 2..364 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120457.4220.1

>prot_M-pyrifera_M_contig120457.4220.1 ID=prot_M-pyrifera_M_contig120457.4220.1|Name=mRNA_M-pyrifera_M_contig120457.4220.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=121bp
MHNLEKKLVDFLEAGTNPSLAMIGGIDVLNNVIPEIGVSPLLPEFVRIVI
NSDESIESEDGWRFICGTLSICKNGIAMRECVDLLDQFISLDSKADDQIL
ESYLNIAIDKTNESLARAATL
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mRNA from alignment at M-pyrifera_M_contig120457:2..364-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120457.4220.1 ID=mRNA_M-pyrifera_M_contig120457.4220.1|Name=mRNA_M-pyrifera_M_contig120457.4220.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=363bp|location=Sequence derived from alignment at M-pyrifera_M_contig120457:2..364- (Macrocystis pyrifera P11B4 male)
ATGCACAACCTCGAAAAGAAGCTTGTTGATTTTCTGGAAGCGGGCACGAA
TCCTTCATTGGCAATGATTGGGGGAATAGATGTGTTGAATAACGTAATTC
CAGAAATCGGAGTTTCTCCACTATTGCCTGAATTCGTTCGTATCGTCATT
AATTCAGACGAAAGTATCGAATCTGAAGATGGATGGCGTTTCATTTGCGG
AACTCTATCTATCTGTAAGAACGGTATTGCAATGAGGGAATGCGTTGACC
TTTTGGATCAATTTATCTCGCTTGATTCCAAAGCGGATGACCAAATCCTT
GAATCCTATCTTAATATTGCGATTGATAAAACCAATGAGTCATTGGCACG
AGCGGCAACCTTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120457:2..364-

>mRNA_M-pyrifera_M_contig120457.4220.1 ID=mRNA_M-pyrifera_M_contig120457.4220.1|Name=mRNA_M-pyrifera_M_contig120457.4220.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=726bp|location=Sequence derived from alignment at M-pyrifera_M_contig120457:2..364- (Macrocystis pyrifera P11B4 male)
ATGCACAACCTCGAAAAGAAGCTTGTTGATTTTCTGGAAGCGGGCACGAA
TCCTTCATTGGCAATGATTGGGGGAATAGATGTGTTGAATAACGTAATTC
CAGAAATCGGAGTTTCTCCACTATTGCCTGAATTCGTTCGTATCGTCATT
AATTCAGACGAAAGTATCGAATCTGAAGATGGATGGCGTTTCATTTGCGG
AACTCTATCTATCTGTAAGAACGGTATTGCAATGAGGGAATGCGTTGACC
TTTTGGATCAATTTATCTCGCTTGATTCCAAAGCGGATGACCAAATCCTT
GAATCCTATCTTAATATTGCGATTGATAAAACCAATGAGTCATTGGCACG
AGCGGCAACCTTGATGCACAACCTCGAAAAGAAGCTTGTTGATTTTCTGG
AAGCGGGCACGAATCCTTCATTGGCAATGATTGGGGGAATAGATGTGTTG
AATAACGTAATTCCAGAAATCGGAGTTTCTCCACTATTGCCTGAATTCGT
TCGTATCGTCATTAATTCAGACGAAAGTATCGAATCTGAAGATGGATGGC
GTTTCATTTGCGGAACTCTATCTATCTGTAAGAACGGTATTGCAATGAGG
GAATGCGTTGACCTTTTGGATCAATTTATCTCGCTTGATTCCAAAGCGGA
TGACCAAATCCTTGAATCCTATCTTAATATTGCGATTGATAAAACCAATG
AGTCATTGGCACGAGCGGCAACCTTG
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