mRNA_M-pyrifera_M_contig120450.4219.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120450.4219.1
Unique NamemRNA_M-pyrifera_M_contig120450.4219.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig120450.4219.1 vs. uniprot
Match: A0A151ZIJ5_9MYCE (Protein phosphatase 2A scaffold subunit n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZIJ5_9MYCE)

HSP 1 Score: 87.0 bits (214), Expect = 5.230e-18
Identity = 45/87 (51.72%), Postives = 60/87 (68.97%), Query Frame = 1 
Query:    1 DQDSVRLLAIENCARLAKILSAGENREHIMPLARACAEDKSWRVRNNVAAAFAELCAAVGGEAARESLLEPFLHLLQDPEAEVRAAA 261
            +QDSVRLL +ENCA +  +L+  EN   I+P+ ++C+ DKSWRVR  VA  F ELC AVG E  +  L++ F+ LL+D EAEVR  A
Sbjct:  204 EQDSVRLLGVENCALIGSMLTQEENIHLILPVIKSCSLDKSWRVRFMVARLFKELCEAVGPEITKSELVQAFVKLLKDTEAEVRTEA 290
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BLAST of mRNA_M-pyrifera_M_contig120450.4219.1 vs. uniprot
Match: A0A662WFL1_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WFL1_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 4.340e-17
Identity = 44/82 (53.66%), Postives = 57/82 (69.51%), Query Frame = 1 
Query:    1 DQDSVRLLAIENCARLAKILSAGENREHIMPLARACAEDKSWRVRNNVAAAFAELCAAVGGEAARESLLEPFLHLLQDPEAE 246
            DQDSVRLLAIEN A +A++LS  EN +H++P+ RA  ED+SWRVR ++A  F  L  A+G +     LL  F +LLQD EAE
Sbjct:    9 DQDSVRLLAIENSAAIAELLSQDENTQHVLPIVRASVEDRSWRVRFSIAKDFFPLSRAMGSQITESELLGCFSNLLQDAEAE 90
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BLAST of mRNA_M-pyrifera_M_contig120450.4219.1 vs. uniprot
Match: UPI001E1D436B (LOW QUALITY PROTEIN: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D436B)

HSP 1 Score: 82.4 bits (202), Expect = 2.230e-16
Identity = 49/92 (53.26%), Postives = 64/92 (69.57%), Query Frame = 1 
Query:    1 DQDSVRLLAIENCARLAKILSA-GENREHIMPLARACAEDKSWRVRNNVAAAFAELCAAVGGEAARESLLEPFLHLLQDPEAEVRAAACKGV 273
            +QDSVRLL +EN A LA +L+   E ++ I+ + R+ A DKSWRVR  VA   +ELCAA+G +A+RE LL  FL+LL+D E EVR AA   V
Sbjct:  257 EQDSVRLLVVENAAVLASLLAPQXEWKQRIIGIVRSFAADKSWRVRYMVADQLSELCAALGPQASREDLLPAFLNLLRDIEPEVRTAAALKV 348
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BLAST of mRNA_M-pyrifera_M_contig120450.4219.1 vs. uniprot
Match: A0A7R9BVA2_9CRUS (Hypothetical protein n=2 Tax=Notodromas monacha TaxID=399045 RepID=A0A7R9BVA2_9CRUS)

HSP 1 Score: 80.9 bits (198), Expect = 7.730e-16
Identity = 48/95 (50.53%), Postives = 62/95 (65.26%), Query Frame = 1 
Query:    1 DQDSVRLLAIENCARLAKILSAGEN----REHIMPLARACAEDKSWRVRNNVAAAFAELCAAVGGEAARESLLEPFLHLLQDPEAEVRAAACKGV 273
            +QDSVRLLA++ C  +A++L+   N     E+IMP  +A AEDKSWRVR  VA  F +L  AVG E ++  L+  F  LL+D EAEVRAAA   V
Sbjct:  219 EQDSVRLLAVDGCVAIARLLTKNGNPDDTAEYIMPTLKASAEDKSWRVRFMVAEKFTDLQEAVGEELSKTELVGHFCALLKDVEAEVRAAAAHKV 313
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BLAST of mRNA_M-pyrifera_M_contig120450.4219.1 vs. uniprot
Match: F4PIG1_CAVFA (Protein phosphatase 2A scaffold subunit n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PIG1_CAVFA)

HSP 1 Score: 80.5 bits (197), Expect = 1.060e-15
Identity = 43/87 (49.43%), Postives = 58/87 (66.67%), Query Frame = 1 
Query:    1 DQDSVRLLAIENCARLAKILSAGENREHIMPLARACAEDKSWRVRNNVAAAFAELCAAVGGEAARESLLEPFLHLLQDPEAEVRAAA 261
            +QDSVRLL +ENCA +  +L+  EN + I+P  R  ++DKSWRVR  VA  F ELC ++G E  +  L+  F+ LL+D EAEVR  A
Sbjct:  260 EQDSVRLLGVENCAIIGSMLTNEENGQLILPTLRQSSQDKSWRVRYMVAHLFKELCDSMGPEITKAELVGAFVKLLKDSEAEVRTEA 346
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BLAST of mRNA_M-pyrifera_M_contig120450.4219.1 vs. uniprot
Match: A0A812LRL6_9DINO (Ppp2r1a protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812LRL6_9DINO)

HSP 1 Score: 79.0 bits (193), Expect = 3.650e-15
Identity = 39/58 (67.24%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:    1 DQDSVRLLAIENCARLAKILSAGENREHIMPLARACAEDKSWRVRNNVAAAFAELCAA 174
            DQDSVRLLAIENC   A+ L+AG+ +  ++PLA+ACAEDKSWRVRNN+A  F EL AA
Sbjct:  212 DQDSVRLLAIENCTAFARNLAAGDAQSTVLPLAKACAEDKSWRVRNNIAKDFHELSAA 269
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BLAST of mRNA_M-pyrifera_M_contig120450.4219.1 vs. uniprot
Match: UPI001EE1E25C (serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like n=1 Tax=Equus quagga TaxID=89248 RepID=UPI001EE1E25C)

HSP 1 Score: 77.4 bits (189), Expect = 6.260e-15
Identity = 47/91 (51.65%), Postives = 57/91 (62.64%), Query Frame = 1 
Query:    1 DQDSVRLLAIENCARLAKILSAGENREHIMPLARACAEDKSWRVRNNVAAAFAELCAAVGGEAARESLLEPFLHLLQDPEAEVRAAACKGV 273
            +QDSVRLL +E C  +A++LS  +     MP  R  AEDKSWRVR  VA  F+EL  AVG +     L+  F +LLQD EAEVRAAA   V
Sbjct:   37 EQDSVRLLPVEACVSIAQLLSQDDLEALGMPTLRQAAEDKSWRVRYMVANKFSELQKAVGPKITVNDLIPAFQNLLQDCEAEVRAAAAHKV 127
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BLAST of mRNA_M-pyrifera_M_contig120450.4219.1 vs. uniprot
Match: UPI001D03BF95 (LOW QUALITY PROTEIN: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like n=1 Tax=Equus asinus TaxID=9793 RepID=UPI001D03BF95)

HSP 1 Score: 77.4 bits (189), Expect = 1.080e-14
Identity = 47/91 (51.65%), Postives = 57/91 (62.64%), Query Frame = 1 
Query:    1 DQDSVRLLAIENCARLAKILSAGENREHIMPLARACAEDKSWRVRNNVAAAFAELCAAVGGEAARESLLEPFLHLLQDPEAEVRAAACKGV 273
            +QDSVRLL +E C  +A++LS  +     MP  R  AEDKSWRVR  VA  F+EL  AVG +     L+  F +LLQD EAEVRAAA   V
Sbjct:   37 EQDSVRLLPVEACVSIAQLLSQDDLEALGMPTLRQAAEDKSWRVRYMVANKFSELQKAVGPKITVNDLIPAFQNLLQDCEAEVRAAAAHKV 127
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BLAST of mRNA_M-pyrifera_M_contig120450.4219.1 vs. uniprot
Match: A0A075A170_9TREM (Uncharacterized protein n=1 Tax=Opisthorchis viverrini TaxID=6198 RepID=A0A075A170_9TREM)

HSP 1 Score: 77.0 bits (188), Expect = 1.770e-14
Identity = 42/87 (48.28%), Postives = 56/87 (64.37%), Query Frame = 1 
Query:    1 DQDSVRLLAIENCARLAKILSAGENREHIMPLARACAEDKSWRVRNNVAAAFAELCAAVGGEAARESLLEPFLHLLQDPEAEVRAAA 261
            DQDSVRLL +      A++LS  +   HI+P+ R  AEDKSWRVR  +A    +L AAV  +   + L++ + HLL+DPE EVRAAA
Sbjct:  217 DQDSVRLLGVNASVEFAEVLSVEDILNHIIPVVRGAAEDKSWRVRYQLADHITDLQAAVKPQITVQHLVDVYEHLLKDPEGEVRAAA 303
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BLAST of mRNA_M-pyrifera_M_contig120450.4219.1 vs. uniprot
Match: A0A8C4LKS8_EQUAS (Uncharacterized protein n=1 Tax=Equus asinus asinus TaxID=83772 RepID=A0A8C4LKS8_EQUAS)

HSP 1 Score: 75.5 bits (184), Expect = 5.680e-14
Identity = 46/91 (50.55%), Postives = 56/91 (61.54%), Query Frame = 1 
Query:    1 DQDSVRLLAIENCARLAKILSAGENREHIMPLARACAEDKSWRVRNNVAAAFAELCAAVGGEAARESLLEPFLHLLQDPEAEVRAAACKGV 273
            +QDSVRLL +E C  +A++LS  +     MP  R  AEDKSWRV   VA  F+EL  AVG +     L+  F +LLQD EAEVRAAA   V
Sbjct:  101 EQDSVRLLPVEACVSIAQLLSQDDLEALGMPTLRQAAEDKSWRVHYMVANKFSELQKAVGPKITVNDLIPAFQNLLQDCEAEVRAAAAHKV 191
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120450.4219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A151ZIJ5_9MYCE5.230e-1851.72Protein phosphatase 2A scaffold subunit n=1 Tax=Ti... [more]
A0A662WFL1_9STRA4.340e-1753.66Uncharacterized protein (Fragment) n=2 Tax=Nothoph... [more]
UPI001E1D436B2.230e-1653.26LOW QUALITY PROTEIN: serine/threonine-protein phos... [more]
A0A7R9BVA2_9CRUS7.730e-1650.53Hypothetical protein n=2 Tax=Notodromas monacha Ta... [more]
F4PIG1_CAVFA1.060e-1549.43Protein phosphatase 2A scaffold subunit n=1 Tax=Ca... [more]
A0A812LRL6_9DINO3.650e-1567.24Ppp2r1a protein n=1 Tax=Symbiodinium sp. KB8 TaxID... [more]
UPI001EE1E25C6.260e-1551.65serine/threonine-protein phosphatase 2A 65 kDa reg... [more]
UPI001D03BF951.080e-1451.65LOW QUALITY PROTEIN: serine/threonine-protein phos... [more]
A0A075A170_9TREM1.770e-1448.28Uncharacterized protein n=1 Tax=Opisthorchis viver... [more]
A0A8C4LKS8_EQUAS5.680e-1450.55Uncharacterized protein n=1 Tax=Equus asinus asinu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120450contigM-pyrifera_M_contig120450:1..273 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score82.4
Seed ortholog evalue1.2e-13
Seed eggNOG ortholog42254.XP_004604739.1
Preferred namePPP2R1B
KEGG koko:K03456
KEGG Pathwayko03015,ko04071,ko04111,ko04113,ko04114,ko04151,ko04152,ko04261,ko04350,ko04390,ko04391,ko04530,ko04728,ko04730,ko05142,ko05160,ko05165,map03015,map04071,map04111,map04113,map04114,map04151,map04152,map04261,map04350,map04390,map04391,map04530,map04728,map04730,map05142,map05160,map05165
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0006915,GO:0008150,GO:0008219,GO:0009653,GO:0009966,GO:0009967,GO:0009987,GO:0010646,GO:0010647,GO:0010941,GO:0010942,GO:0012501,GO:0016020,GO:0023051,GO:0023056,GO:0032502,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0044425,GO:0045121,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048856,GO:0050789,GO:0050794,GO:0060561,GO:0065007,GO:0098589,GO:0098805,GO:0098857,GO:1902742,GO:2001233,GO:2001235,GO:2001236,GO:2001238,GO:2001239,GO:2001241
EggNOG free text desc.positive regulation of extrinsic apoptotic signaling pathway in absence of ligand
EggNOG OGs38DRM@33154,3B9UG@33208,3CXII@33213,3J7UA@40674,47ZD8@7711,491BQ@7742,KOG0211@1,KOG0211@2759
COG Functional cat.T
Best tax levelMammalia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03036
Exons1
Model size273
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815724.274438-CDS-M-pyrifera_M_contig120450:0..2731622815724.274438-CDS-M-pyrifera_M_contig120450:0..273Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120450 1..273 +
1692277539.3576872-CDS-M-pyrifera_M_contig120450:0..2731692277539.3576872-CDS-M-pyrifera_M_contig120450:0..273Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120450 1..273 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120450.4219.1prot_M-pyrifera_M_contig120450.4219.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120450 1..273 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120450.4219.1

>prot_M-pyrifera_M_contig120450.4219.1 ID=prot_M-pyrifera_M_contig120450.4219.1|Name=mRNA_M-pyrifera_M_contig120450.4219.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=91bp
DQDSVRLLAIENCARLAKILSAGENREHIMPLARACAEDKSWRVRNNVAA
AFAELCAAVGGEAARESLLEPFLHLLQDPEAEVRAAACKGV
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mRNA from alignment at M-pyrifera_M_contig120450:1..273+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120450.4219.1 ID=mRNA_M-pyrifera_M_contig120450.4219.1|Name=mRNA_M-pyrifera_M_contig120450.4219.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=273bp|location=Sequence derived from alignment at M-pyrifera_M_contig120450:1..273+ (Macrocystis pyrifera P11B4 male)
GACCAGGACAGCGTTCGGCTGCTTGCGATTGAGAACTGCGCGCGGCTGGC
CAAGATTTTGAGCGCTGGGGAGAACCGGGAGCACATCATGCCTCTGGCGC
GGGCGTGTGCGGAAGATAAGTCGTGGCGCGTGCGGAACAATGTCGCGGCG
GCGTTTGCGGAACTTTGCGCCGCCGTGGGAGGCGAGGCGGCGCGGGAATC
TCTCCTCGAACCTTTCCTGCACCTCCTGCAAGATCCCGAGGCGGAAGTTC
GCGCTGCTGCCTGCAAAGGGGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120450:1..273+

>mRNA_M-pyrifera_M_contig120450.4219.1 ID=mRNA_M-pyrifera_M_contig120450.4219.1|Name=mRNA_M-pyrifera_M_contig120450.4219.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=546bp|location=Sequence derived from alignment at M-pyrifera_M_contig120450:1..273+ (Macrocystis pyrifera P11B4 male)
GACCAGGACAGCGTTCGGCTGCTTGCGATTGAGAACTGCGCGCGGCTGGC
CAAGATTTTGAGCGCTGGGGAGAACCGGGAGCACATCATGCCTCTGGCGC
GGGCGTGTGCGGAAGATAAGTCGTGGCGCGTGCGGAACAATGTCGCGGCG
GCGTTTGCGGAACTTTGCGCCGCCGTGGGAGGCGAGGCGGCGCGGGAATC
TCTCCTCGAACCTTTCCTGCACCTCCTGCAAGATCCCGAGGCGGAAGTTC
GCGCTGCTGCCTGCAAAGGGGTCGACCAGGACAGCGTTCGGCTGCTTGCG
ATTGAGAACTGCGCGCGGCTGGCCAAGATTTTGAGCGCTGGGGAGAACCG
GGAGCACATCATGCCTCTGGCGCGGGCGTGTGCGGAAGATAAGTCGTGGC
GCGTGCGGAACAATGTCGCGGCGGCGTTTGCGGAACTTTGCGCCGCCGTG
GGAGGCGAGGCGGCGCGGGAATCTCTCCTCGAACCTTTCCTGCACCTCCT
GCAAGATCCCGAGGCGGAAGTTCGCGCTGCTGCCTGCAAAGGGGTC
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