mRNA_M-pyrifera_M_contig120444.4216.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120444.4216.1
Unique NamemRNA_M-pyrifera_M_contig120444.4216.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig120444.4216.1 vs. uniprot
Match: A0A1Z5KGF3_FISSO (1-phosphatidylinositol-3-phosphate 5-kinase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KGF3_FISSO)

HSP 1 Score: 60.5 bits (145), Expect = 6.530e-8
Identity = 41/138 (29.71%), Postives = 65/138 (47.10%), Query Frame = 1
Query:    7 SVRYVIVMENIFCGATPSLIFDLKGKRRNCILSPEQARLVGKSFNEMRGQKPAPSRTPTSRPVRATFSADTDRDLHAATAPLPTTLFDDDLFSFTGGHPLALTESGLAFLRAAVEADTEHLRALAIMDYSLLVGLDQE 420
            ++  V VM+NIF     + IFDLKG  R    +  +     +S  ++  +  A S   T     +    +    + A     P TL D D   FT G PL LT+   A  + ++  DT  L  + ++DYS+LVG+D++
Sbjct: 1335 TMEQVAVMQNIFYNKNINKIFDLKGSLRGRFAAQRK----DESQEDINAK--AKSANVTDSDNNSILDGNEPTHISAVKRDGPVTLLDGDFLEFTRGRPLPLTDRAKALFQMSILNDTLFLSIINVLDYSILVGVDED 1466          
BLAST of mRNA_M-pyrifera_M_contig120444.4216.1 vs. uniprot
Match: A0A7S3NNB9_9STRA (1-phosphatidylinositol-3-phosphate 5-kinase n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NNB9_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.220e-7
Identity = 42/140 (30.00%), Postives = 70/140 (50.00%), Query Frame = 1
Query:    1 RGSVRYVIVMENIFCGATPSLIFDLKGKRRNCILSPEQARLVGKSFNEMRGQKPAPSRTPTSRPVRATFSADTDRDLHAATAPLPTTLFDDDLFSFTGGHPLALTESGLAFLRAAVEADTEHLRALAIMDYSLLVGLDQE 420
            R  +  V++M+N+F   +  L+FDLKG  R+        R+   S  E++   P    +P+SR V++   A           P+   L D++   F+ G PL + ++   F   AV  DT  L  + ++DYS+LVG+D+E
Sbjct: 1549 RRVMEQVVIMQNLFYERSIRLVFDLKGSTRS-----RYTRIA--STPELKSTLPNMDSSPSSRVVQSAAEAQ----------PV---LLDENFLEFSQGKPLPIRDTSRQFFTNAVLNDTLFLSLINVVDYSILVGIDEE 1668          
BLAST of mRNA_M-pyrifera_M_contig120444.4216.1 vs. uniprot
Match: A0A6P6XWF8_DERPT (1-phosphatidylinositol-3-phosphate 5-kinase n=1 Tax=Dermatophagoides pteronyssinus TaxID=6956 RepID=A0A6P6XWF8_DERPT)

HSP 1 Score: 59.3 bits (142), Expect = 1.670e-7
Identity = 46/153 (30.07%), Postives = 71/153 (46.41%), Query Frame = 1
Query:    1 RGSVRYVIVMENIFCGATPSLIFDLKGKRRN--CILSPEQARLVGKSFNEMRGQKPAPSRTPTSRPVRATFSADTDRDL-----------HAATAPLPTTLFDDDLFSFTGGHPLALTESGLAFLRAAVEADTEHLRALAIMDYSLLVGLDQE 420
            +G + Y++VMEN+F     S I+DLKG  RN    +S   +       N+M     A S       + +T ++D                + AT+   T L D++L   +  +PL +      FL  A+  D+E L+   +MDYSLLVG D+E
Sbjct: 1793 KGYIHYILVMENLFYECNVSYIYDLKGSMRNRKIDISSTYSNNKNDDLNDMTKIIDADSS------LNSTLNSDRSXXXXXXXXXXQTIKNTATS---TVLLDENLRQISIAYPLYVHVHSKIFLMEAINRDSEFLKKHCVMDYSLLVGFDEE 1936          
BLAST of mRNA_M-pyrifera_M_contig120444.4216.1 vs. uniprot
Match: A0A7S1YB45_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YB45_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 3.810e-7
Identity = 48/155 (30.97%), Postives = 66/155 (42.58%), Query Frame = 1
Query:    7 SVRYVIVMENIFCGATPSLIFDLKGKRRNCILSPEQARLVGKSFNEMRGQKPAPSRTPTSRPVRATFSADTDRDLH---------------AATAP---LPTTLFDDDLFSFTGGHPLALTESGLAFLRAAVEADTEHLRALAIMDYSLLVGLDQ 417
            S+  V VM+NIF     S  FDLKG  R            G+    ++G +  P  TPT+   R     D+D D                 A T P      TL D D   FT G PL L++   A    +V  DT  L  + ++DYS+LVG+++
Sbjct:  397 SMEQVAVMQNIFYKRKISKTFDLKGSLR------------GRFARHLQGNRDNPG-TPTNNNERRHSRGDSDTDFSVDEVSSSDGFKSESDANTKPELSSEATLLDGDFLEFTNGRPLPLSDRAKAVFHMSVLNDTLFLSIINVLDYSILVGIEE 538          
BLAST of mRNA_M-pyrifera_M_contig120444.4216.1 vs. uniprot
Match: UPI000811915D (1-phosphatidylinositol 3-phosphate 5-kinase-like n=1 Tax=Rhagoletis zephyria TaxID=28612 RepID=UPI000811915D)

HSP 1 Score: 57.8 bits (138), Expect = 5.440e-7
Identity = 43/146 (29.45%), Postives = 63/146 (43.15%), Query Frame = 1
Query:    1 RGSVRYVIVMENIFCGATPSLIFDLKGKRRN------CILSPEQARLVGKSFNEMRGQKPAPSRTPTSRPVRATFSADTDRDLHAATAPLPTTLFDDDLFSFTGGHPLALTESGLAFLRAAVEADTEHLRALAIMDYSLLVGLDQE 420
            + SV +++VMEN+F     S I+DLKG  RN         + +     G       G   +  +   S   R     D  +      A   T L D++L   +  +PL +       L  A+  D+E LRA  +MDYSLLVG D +
Sbjct:  624 KASVHHILVMENLFYECNISFIYDLKGSMRNRKVEINVAAAADAEMSTGGEETSANGNSASVDQATGSSNSRGNNVHDEAKLYQNNHAQTSTVLMDENLRLISTVYPLYVHPHSKRLLMEAIFRDSEFLRAHVVMDYSLLVGFDDQ 769          
BLAST of mRNA_M-pyrifera_M_contig120444.4216.1 vs. uniprot
Match: A0A3P3YEJ2_PLABS (1-phosphatidylinositol-3-phosphate 5-kinase n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YEJ2_PLABS)

HSP 1 Score: 57.4 bits (137), Expect = 7.530e-7
Identity = 26/55 (47.27%), Postives = 39/55 (70.91%), Query Frame = 1
Query:  253 PTTLFDDDLFSFTGGHPLALTESGLAFLRAAVEADTEHLRALAIMDYSLLVGLDQ 417
            P TL D DL  +T G P++LT + LA LR +V+ DTE L   +++DYS+L+G+D+
Sbjct:  931 PKTLLDGDLLQYTKGVPISLTGNSLADLRLSVQNDTEFLSGRSVVDYSILIGVDE 985          
BLAST of mRNA_M-pyrifera_M_contig120444.4216.1 vs. uniprot
Match: A0A7S1BCZ6_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BCZ6_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.880e-6
Identity = 46/156 (29.49%), Postives = 66/156 (42.31%), Query Frame = 1
Query:    7 SVRYVIVMENIFCGATPSLIFDLKGKRR----NCILSPEQARLV------------GKSFNEMRGQKPAPSRTPTSRPVRATFSADTDRDLHAATAPLPT--TLFDDDLFSFTGGHPLALTESGLAFLRAAVEADTEHLRALAIMDYSLLVGLDQE 420
            S+  V+VM NIF G   S IFDLKG  R    N     E++                KS  + +G K       +     +      D  L +     P   TL D D   FT G PL L++   A    ++  DT  L  + ++DYS+LVG+D++
Sbjct:  695 SMEQVVVMPNIFHGRKISKIFDLKGSLRGRYANVNADKEESATADADGTSKSASNRSKSEKDPKGNKEVYDDVGSDSEESSDSENTDDSTLSSPKEERPNVATLLDGDFLEFTVGRPLPLSDRAKAVFHMSILNDTLFLSIINVLDYSILVGIDED 850          
BLAST of mRNA_M-pyrifera_M_contig120444.4216.1 vs. uniprot
Match: A0A7S1C9V6_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C9V6_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 4.940e-6
Identity = 26/52 (50.00%), Postives = 35/52 (67.31%), Query Frame = 1
Query:  262 LFDDDLFSFTGGHPLALTESGLAFLRAAVEADTEHLRALAIMDYSLLVGLDQ 417
            L D DL ++T GHPLAL+E     L  +V  DTE L  + ++DYSLLVG+D+
Sbjct:   13 LLDADLLAYTHGHPLALSEPAKRRLNWSVLHDTELLAQIKVVDYSLLVGIDE 64          
BLAST of mRNA_M-pyrifera_M_contig120444.4216.1 vs. uniprot
Match: A0A7S3HQB0_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HQB0_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 8.040e-6
Identity = 43/144 (29.86%), Postives = 60/144 (41.67%), Query Frame = 1
Query:    1 RGSVRYVIVMENIFCGATPSLIFDLKGKRRNCILSPEQARLVG-----KSFNEMRGQKPAPSRTPTSRPVRATFSADTDRDLHAATAPLPTTLFDDDLFSFTGGHPLALTESGLAFLRAAVEADTEHLRALAIMDYSLLVGLDQ 417
            R ++  V+VMENIF     +  FDLKG  R        AR V      ++F+E   ++    R     P  A                +   L DD+L   T G P  L      F   AV+ DT  L  + ++DYS+LVG D+
Sbjct:   16 RKAIENVVVMENIFYQRNITRSFDLKGSSR--------ARYVDLGYKVENFDEALARRRLARRFGGEEPAEA--------------EQVSQVLMDDNLMELTKGRPFPLKHRAKLFFHKAVQNDTLFLSIVNVVDYSILVGFDE 137          
BLAST of mRNA_M-pyrifera_M_contig120444.4216.1 vs. uniprot
Match: A0A7S3HPL1_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HPL1_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.400e-5
Identity = 43/144 (29.86%), Postives = 60/144 (41.67%), Query Frame = 1
Query:    1 RGSVRYVIVMENIFCGATPSLIFDLKGKRRNCILSPEQARLVG-----KSFNEMRGQKPAPSRTPTSRPVRATFSADTDRDLHAATAPLPTTLFDDDLFSFTGGHPLALTESGLAFLRAAVEADTEHLRALAIMDYSLLVGLDQ 417
            R ++  V+VMENIF     +  FDLKG  R        AR V      ++F+E   ++    R     P  A                +   L DD+L   T G P  L      F   AV+ DT  L  + ++DYS+LVG D+
Sbjct:   16 RKAIENVVVMENIFYQRNITRSFDLKGSSR--------ARYVDLGYKVENFDEALARRRLARRFGGEEPAEA--------------EQVSQVLMDDNLMELTKGRPFPLKHRAKLFFHKAVQNDTLFLSIVNVVDYSILVGFDE 137          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120444.4216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A1Z5KGF3_FISSO6.530e-829.711-phosphatidylinositol-3-phosphate 5-kinase n=2 Ta... [more]
A0A7S3NNB9_9STRA1.220e-730.001-phosphatidylinositol-3-phosphate 5-kinase n=1 Ta... [more]
A0A6P6XWF8_DERPT1.670e-730.071-phosphatidylinositol-3-phosphate 5-kinase n=1 Ta... [more]
A0A7S1YB45_9STRA3.810e-730.97Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
UPI000811915D5.440e-729.451-phosphatidylinositol 3-phosphate 5-kinase-like n... [more]
A0A3P3YEJ2_PLABS7.530e-747.271-phosphatidylinositol-3-phosphate 5-kinase n=2 Ta... [more]
A0A7S1BCZ6_9STRA1.880e-629.49Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S1C9V6_9STRA4.940e-650.00Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S3HQB0_9STRA8.040e-629.86Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S3HPL1_9STRA1.400e-529.86Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120444contigM-pyrifera_M_contig120444:14..433 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size420
Cds size393
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815724.135068-CDS-M-pyrifera_M_contig120444:13..4061622815724.135068-CDS-M-pyrifera_M_contig120444:13..406Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120444 14..406 -
1692277539.3029902-CDS-M-pyrifera_M_contig120444:13..4061692277539.3029902-CDS-M-pyrifera_M_contig120444:13..406Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120444 14..406 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815724.1451945-UTR-M-pyrifera_M_contig120444:406..4331622815724.1451945-UTR-M-pyrifera_M_contig120444:406..433Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig120444 407..433 -
1692277539.3133311-UTR-M-pyrifera_M_contig120444:406..4331692277539.3133311-UTR-M-pyrifera_M_contig120444:406..433Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig120444 407..433 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120444.4216.1prot_M-pyrifera_M_contig120444.4216.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120444 14..406 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120444.4216.1

>prot_M-pyrifera_M_contig120444.4216.1 ID=prot_M-pyrifera_M_contig120444.4216.1|Name=mRNA_M-pyrifera_M_contig120444.4216.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=131bp
MENIFCGATPSLIFDLKGKRRNCILSPEQARLVGKSFNEMRGQKPAPSRT
PTSRPVRATFSADTDRDLHAATAPLPTTLFDDDLFSFTGGHPLALTESGL
AFLRAAVEADTEHLRALAIMDYSLLVGLDQE
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mRNA from alignment at M-pyrifera_M_contig120444:14..433-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120444.4216.1 ID=mRNA_M-pyrifera_M_contig120444.4216.1|Name=mRNA_M-pyrifera_M_contig120444.4216.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig120444:14..433- (Macrocystis pyrifera P11B4 male)
CGTGGATCAGTACGTTATGTTATTGTGATGGAGAACATTTTTTGTGGAGC GACTCCAAGTTTGATTTTTGATCTGAAAGGAAAACGTCGAAATTGCATTC TCTCCCCTGAACAAGCACGCCTTGTTGGAAAGAGTTTCAATGAAATGCGC GGTCAGAAACCAGCTCCTTCCCGCACACCAACGAGTCGACCTGTTCGTGC AACCTTTTCAGCTGACACAGATCGTGATCTTCATGCTGCAACAGCTCCAC TTCCAACCACTCTTTTCGACGACGACCTCTTCTCCTTCACAGGTGGTCAT CCACTTGCTCTCACTGAATCTGGGCTTGCATTCCTTCGTGCAGCAGTTGA GGCTGATACGGAGCATTTACGTGCATTGGCAATTATGGACTATAGTCTCT TGGTTGGTCTTGATCAAGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120444:14..433-

>mRNA_M-pyrifera_M_contig120444.4216.1 ID=mRNA_M-pyrifera_M_contig120444.4216.1|Name=mRNA_M-pyrifera_M_contig120444.4216.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=786bp|location=Sequence derived from alignment at M-pyrifera_M_contig120444:14..433- (Macrocystis pyrifera P11B4 male)
ATGGAGAACATTTTTTGTGGAGCGACTCCAAGTTTGATTTTTGATCTGAA
AGGAAAACGTCGAAATTGCATTCTCTCCCCTGAACAAGCACGCCTTGTTG
GAAAGAGTTTCAATGAAATGCGCGGTCAGAAACCAGCTCCTTCCCGCACA
CCAACGAGTCGACCTGTTCGTGCAACCTTTTCAGCTGACACAGATCGTGA
TCTTCATGCTGCAACAGCTCCACTTCCAACCACTCTTTTCGACGACGACC
TCTTCTCCTTCACAGGTGGTCATCCACTTGCTCTCACTGAATCTGGGCTT
GCATTCCTTCGTGCAGCAGTTGAGGCTGATACGGAGCATTTACGTGCATT
GGCAATTATGGACTATAGTCTCTTGGTTGGTCTTGATCAAGAAATGGAGA
ACATTTTTTGTGGAGCGACTCCAAGTTTGATTTTTGATCTGAAAGGAAAA
CGTCGAAATTGCATTCTCTCCCCTGAACAAGCACGCCTTGTTGGAAAGAG
TTTCAATGAAATGCGCGGTCAGAAACCAGCTCCTTCCCGCACACCAACGA
GTCGACCTGTTCGTGCAACCTTTTCAGCTGACACAGATCGTGATCTTCAT
GCTGCAACAGCTCCACTTCCAACCACTCTTTTCGACGACGACCTCTTCTC
CTTCACAGGTGGTCATCCACTTGCTCTCACTGAATCTGGGCTTGCATTCC
TTCGTGCAGCAGTTGAGGCTGATACGGAGCATTTACGTGCATTGGCAATT
ATGGACTATAGTCTCTTGGTTGGTCTTGATCAAGAA
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