mRNA_M-pyrifera_M_contig120397.4205.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120397.4205.1
Unique NamemRNA_M-pyrifera_M_contig120397.4205.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig120397.4205.1 vs. uniprot
Match: A0A2H1FGD6_9ARCH (Putative Multicopper oxidase n=1 Tax=Candidatus Nitrosotalea okcheonensis TaxID=1903276 RepID=A0A2H1FGD6_9ARCH)

HSP 1 Score: 126 bits (317), Expect = 1.670e-32
Identity = 63/133 (47.37%), Postives = 82/133 (61.65%), Query Frame = 1
Query:    1 FSELKDLGSDWEHLGFLGPPLHAEVGDSFEIHFRNNARYSFSMYPAGLSHEQADDDGA--------------AVPPGGEYVYRWDVPGSVGPAPGDWSSTMYQYYSTVDQTADIVAGLVGPIIVTAQGMADGD 357
            F+ LK +   W+HLG LGP +HAEVGD+ ++ F+NNAR+ FS++P G+ + Q D +GA              AVPPGG Y Y W VP   GP P D SS ++ Y+S VD+  D  AGL GPIIVT  G A+ D
Sbjct:  115 FTTLKPIPDKWQHLGILGPVMHAEVGDTIKVVFKNNARFPFSIHPHGVFY-QKDSEGALYNDGVQTSEKKGDAVPPGGNYTYIWQVPERAGPGPHDPSSIVWMYHSHVDEVGDTYAGLAGPIIVTRHGEANPD 246          
BLAST of mRNA_M-pyrifera_M_contig120397.4205.1 vs. uniprot
Match: I4EHU7_9CHLR (Putative Multicopper oxidase n=1 Tax=Nitrolancea hollandica Lb TaxID=1129897 RepID=I4EHU7_9CHLR)

HSP 1 Score: 124 bits (310), Expect = 1.910e-31
Identity = 62/135 (45.93%), Postives = 82/135 (60.74%), Query Frame = 1
Query:    1 FSELKDLGSDWEHLGFLGPPLHAEVGDSFEIHFRNNARYSFSMYPAGLSHE----------------QADDDGAAVPPGGEYVYRWDVPGSVGPAPGDWSSTMYQYYSTVDQTADIVAGLVGPIIVTAQGMADGD 357
            F+ LK+    W+HLG LGP +HAEVGDS ++ F+NN ++  SM+P G+ ++                QADD   AVPPGG Y Y W+VP   GP P D SS ++ Y+S  D+ AD  AGLVGP+I+T QG A  D
Sbjct:  121 FTTLKETDPKWQHLGTLGPVIHAEVGDSIQVVFKNNTQFPASMHPHGVFYQKNAEGAPYNDGTSGGDQADD---AVPPGGTYTYHWEVPERAGPGPHDPSSVIWMYHSHTDEIADGYAGLVGPMIITRQGSAKPD 252          
BLAST of mRNA_M-pyrifera_M_contig120397.4205.1 vs. uniprot
Match: A0A3M9ZYE7_9ARCH (Plastocyanin-like domain-containing protein n=3 Tax=unclassified Nitrosopumilus TaxID=2619919 RepID=A0A3M9ZYE7_9ARCH)

HSP 1 Score: 120 bits (302), Expect = 9.120e-31
Identity = 61/130 (46.92%), Postives = 81/130 (62.31%), Query Frame = 1
Query:    1 FSELKDLGSDWEHLGFLGPPLHAEVGDSFEIHFRNNA-RYSFSMYPAGLSHEQ----------ADDDGAAVPPGGEYVYRWDVPGSVGPAPGDWSSTMYQYYSTVDQTADIVAGLVGPIIVTAQGMADGD 357
            FSEL+    +WEHLG LGP +HA+V D+  + FRNNA   S+SM+P G+ +E+            D G  +PPGGE+ Y W VP   GP P D SS ++ Y+S V+   D  +GLVGPII+TA+ MAD D
Sbjct:  139 FSELEQRAPEWEHLGILGPVIHAKVCDTIVVVFRNNAAEISYSMHPHGVFYEKDSEGARYNDGTSDAGDTIPPGGEHTYVWSVPLRAGPGPNDPSSIVWMYHSHVNSVIDTNSGLVGPIIITAKDMADKD 268          
BLAST of mRNA_M-pyrifera_M_contig120397.4205.1 vs. uniprot
Match: A0A128A287_9ARCH (Putative Multicopper oxidase n=1 Tax=Candidatus Nitrosotalea devanaterra TaxID=1078905 RepID=A0A128A287_9ARCH)

HSP 1 Score: 120 bits (300), Expect = 5.060e-30
Identity = 60/133 (45.11%), Postives = 81/133 (60.90%), Query Frame = 1
Query:    1 FSELKDLGSDWEHLGFLGPPLHAEVGDSFEIHFRNNARYSFSMYPAGLSHEQADDDGA--------------AVPPGGEYVYRWDVPGSVGPAPGDWSSTMYQYYSTVDQTADIVAGLVGPIIVTAQGMADGD 357
            F++L  +   W+HLG LGP +HAEVGD+ ++ F+NNAR+ FS++P G+ + Q D +GA              AV PG  Y Y W VP   GP P D SS ++ Y+S VD+ +D  AGL GPIIVT  G A+ D
Sbjct:  116 FAKLTPISDKWQHLGILGPVIHAEVGDTIKVVFKNNARFPFSIHPHGVFY-QKDSEGAPYNDGIPDSEKKGDAVQPGENYTYVWQVPERAGPGPHDPSSIVWMYHSHVDEVSDTYAGLAGPIIVTRHGEANPD 247          
BLAST of mRNA_M-pyrifera_M_contig120397.4205.1 vs. uniprot
Match: A0A7V3XBR8_9BACT (Copper oxidase n=1 Tax=bacterium TaxID=1869227 RepID=A0A7V3XBR8_9BACT)

HSP 1 Score: 114 bits (286), Expect = 1.360e-28
Identity = 60/133 (45.11%), Postives = 79/133 (59.40%), Query Frame = 1
Query:    1 FSELKDLGSDWEHLGFLGPPLHAEVGDSFEIHFRNNARYSFSMYPAGLSHEQ--------------ADDDGAAVPPGGEYVYRWDVPGSVGPAPGDWSSTMYQYYSTVDQTADIVAGLVGPIIVTAQGMADGD 357
            FS LK  GS   HLG LGPP+ AEVGD+  +HFRNN R+  S++P G+ +++              ADD   AVPP G + Y W VP   GP P D SS  + Y+S  D+TAD  +GL+GP+I+T +G A  D
Sbjct:   34 FSALKLRGSAEAHLGLLGPPIRAEVGDTLIVHFRNNTRFPLSIHPHGVLYDKNSEGSPYADETDLKADD---AVPPSGNHTYVWRVPQRTGPGPLDPSSIAWVYHSHTDETADSNSGLIGPLIITRKGSAKSD 163          
BLAST of mRNA_M-pyrifera_M_contig120397.4205.1 vs. uniprot
Match: A0A2V9GDZ0_9BACT (Copper oxidase n=2 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9GDZ0_9BACT)

HSP 1 Score: 116 bits (290), Expect = 1.390e-28
Identity = 59/133 (44.36%), Postives = 81/133 (60.90%), Query Frame = 1
Query:    1 FSELKDLGSDWEHLGFLGPPLHAEVGDSFEIHFRNNARYSFSMYPAGLSHEQADDDGA--------------AVPPGGEYVYRWDVPGSVGPAPGDWSSTMYQYYSTVDQTADIVAGLVGPIIVTAQGMADGD 357
            F  LK   S+WEHLGFLGP + AEVGD+ ++ FRNN++  +SM+P G+ + + D +GA               VPPGG + Y W V    GPA GD +S ++ Y+S VD+  D   GLVGP+I+TA+G A  D
Sbjct:  107 FKTLKPRTSEWEHLGFLGPLIRAEVGDTIQVIFRNNSKRPYSMHPHGVFYNK-DSEGAPYEDGTSGADKADDGVPPGGTHKYTWQVRERAGPASGDVNSVLWMYHSHVDEHRDPNTGLVGPMIITARGQAKPD 238          
BLAST of mRNA_M-pyrifera_M_contig120397.4205.1 vs. uniprot
Match: UPI000C70255E (multicopper oxidase domain-containing protein n=1 Tax=Candidatus Nitrosotalea bavarica TaxID=1903277 RepID=UPI000C70255E)

HSP 1 Score: 115 bits (289), Expect = 6.260e-28
Identity = 55/132 (41.67%), Postives = 81/132 (61.36%), Query Frame = 1
Query:    1 FSELKDLGSDWEHLGFLGPPLHAEVGDSFEIHFRNNARYSFSMYPAGLSHEQADDD-------------GAAVPPGGEYVYRWDVPGSVGPAPGDWSSTMYQYYSTVDQTADIVAGLVGPIIVTAQGMADGD 357
            F+ L+   + WEHLG LGP +HAEVGD+ ++ F+N+ R   S++P G+ +++A +              G A+PPGG + Y W+VP   GP P D SS ++ Y+S V++  D  AGLVGPII+T  G A+ D
Sbjct:  111 FTTLQPRTAQWEHLGVLGPVIHAEVGDTIKVVFKNDCRIPTSIHPHGVLYDKASEGAPYNDGVPDSEKPGEAIPPGGNFTYVWNVPERAGPGPHDPSSILWMYHSHVNEITDTSAGLVGPIIITRNGEANPD 242          
BLAST of mRNA_M-pyrifera_M_contig120397.4205.1 vs. uniprot
Match: A0A087S1R5_9ARCH (Copper resistance protein A n=1 Tax=Marine Group I thaumarchaeote SCGC AAA799-P11 TaxID=1502295 RepID=A0A087S1R5_9ARCH)

HSP 1 Score: 114 bits (285), Expect = 1.080e-27
Identity = 60/134 (44.78%), Postives = 83/134 (61.94%), Query Frame = 1
Query:    1 FSELKDLGSDWEHLGFLGPPLHAEVGDSFEIHFRNNAR-YSFSMYPAGLSHEQADDDGAA--------------VPPGGEYVYRWDVPGSVGPAPGDWSSTMYQYYSTVDQTADIVAGLVGPIIVTAQGMADGD 357
            FS+LK   S+WEHLG LGP +HAEV D+ ++ F+NNA+   +S++P G+ +E+ D +GA               V PG  Y Y W VP   GP P D SS ++ Y+S V+   D  +GLVGP++VTA+GMAD D
Sbjct:  143 FSKLKPRSSEWEHLGTLGPIIHAEVCDTIKVVFKNNAKELDYSVHPHGVFYEK-DSEGAEYNDDSSTDTKTDGIVSPGQTYTYIWSVPERAGPGPNDPSSIIWMYHSHVNSPMDTNSGLVGPMVVTAKGMADAD 275          
BLAST of mRNA_M-pyrifera_M_contig120397.4205.1 vs. uniprot
Match: A0A2H1EIX9_9ARCH (Putative Multicopper oxidase n=1 Tax=Candidatus Nitrosotalea sinensis TaxID=1499975 RepID=A0A2H1EIX9_9ARCH)

HSP 1 Score: 113 bits (283), Expect = 1.410e-27
Identity = 56/132 (42.42%), Postives = 77/132 (58.33%), Query Frame = 1
Query:    1 FSELKDLGSDWEHLGFLGPPLHAEVGDSFEIHFRNNARYSFSMYPAGLSHEQA-------------DDDGAAVPPGGEYVYRWDVPGSVGPAPGDWSSTMYQYYSTVDQTADIVAGLVGPIIVTAQGMADGD 357
            F+  K LG+ WEHLG LGP +HAEVGD  ++ F+NN     SM+P G+ +++A             D  G ++ PG  + Y W VP   GP P D SS ++ Y+S VD+ +D  AGL GPII+T  G A+ D
Sbjct:  114 FTTQKTLGAKWEHLGMLGPVIHAEVGDVIKVVFKNNCSIPTSMHPHGVLYDKASEGAPYNDGVPDSDKPGESILPGNNFTYIWKVPERAGPGPHDPSSIVWMYHSHVDEVSDSYAGLEGPIIITRHGEANPD 245          
BLAST of mRNA_M-pyrifera_M_contig120397.4205.1 vs. uniprot
Match: A0A7Y2JT82_9BACT (Multicopper oxidase domain-containing protein (Fragment) n=1 Tax=Gemmatimonadales bacterium TaxID=2448054 RepID=A0A7Y2JT82_9BACT)

HSP 1 Score: 110 bits (274), Expect = 2.790e-27
Identity = 57/132 (43.18%), Postives = 79/132 (59.85%), Query Frame = 1
Query:    1 FSELKDLGSDWEHLGFLGPPLHAEVGDSFEIHFRNNARYSFSMYPAGLSHEQ-------ADDDGA------AVPPGGEYVYRWDVPGSVGPAPGDWSSTMYQYYSTVDQTADIVAGLVGPIIVTAQGMADGD 357
            F+ LK   ++WEHLGFLGP L AEVGD+  + FRNN  +  S++P G+ +++       ADD         AVPPGG + Y W VP   GPA GD +S  + Y+S   +  D+ AGL+GP+IV+A+G    D
Sbjct:  121 FTALKPRPAEWEHLGFLGPLLRAEVGDTIRVVFRNNVTFPASVHPHGVFYDKNSEGAPSADDAXXXXXXDDAVPPGGMHTYVWPVPERAGPAEGDLNSIFWMYHSHTVEDRDVNAGLMGPMIVSARGTTKRD 252          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120397.4205.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2H1FGD6_9ARCH1.670e-3247.37Putative Multicopper oxidase n=1 Tax=Candidatus Ni... [more]
I4EHU7_9CHLR1.910e-3145.93Putative Multicopper oxidase n=1 Tax=Nitrolancea h... [more]
A0A3M9ZYE7_9ARCH9.120e-3146.92Plastocyanin-like domain-containing protein n=3 Ta... [more]
A0A128A287_9ARCH5.060e-3045.11Putative Multicopper oxidase n=1 Tax=Candidatus Ni... [more]
A0A7V3XBR8_9BACT1.360e-2845.11Copper oxidase n=1 Tax=bacterium TaxID=1869227 Rep... [more]
A0A2V9GDZ0_9BACT1.390e-2844.36Copper oxidase n=2 Tax=Acidobacteria bacterium Tax... [more]
UPI000C70255E6.260e-2841.67multicopper oxidase domain-containing protein n=1 ... [more]
A0A087S1R5_9ARCH1.080e-2744.78Copper resistance protein A n=1 Tax=Marine Group I... [more]
A0A2H1EIX9_9ARCH1.410e-2742.42Putative Multicopper oxidase n=1 Tax=Candidatus Ni... [more]
A0A7Y2JT82_9BACT2.790e-2743.18Multicopper oxidase domain-containing protein (Fra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120397contigM-pyrifera_M_contig120397:1..536 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score108.2
Seed ortholog evalue2.6e-21
Seed eggNOG ortholog1267533.KB906735_gene4481
KEGG rclassRC00086
KEGG koko:K00368,ko:K22348,ko:K22349
KEGG ReactionR00783,R00785
KEGG Pathwayko00910,ko01120,map00910,map01120
KEGG ModuleM00529
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Multicopper oxidase
EggNOG OGsCOG2132@1,COG2132@2
EC1.16.3.3,1.7.2.1
COG Functional cat.Q
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons2
Model size357
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815723.323611-CDS-M-pyrifera_M_contig120397:0..901622815723.323611-CDS-M-pyrifera_M_contig120397:0..90Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120397 1..90 +
1692277538.8026824-CDS-M-pyrifera_M_contig120397:0..901692277538.8026824-CDS-M-pyrifera_M_contig120397:0..90Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120397 1..90 +
1622815723.340663-CDS-M-pyrifera_M_contig120397:269..5361622815723.340663-CDS-M-pyrifera_M_contig120397:269..536Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120397 270..536 +
1692277538.8142252-CDS-M-pyrifera_M_contig120397:269..5361692277538.8142252-CDS-M-pyrifera_M_contig120397:269..536Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120397 270..536 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120397.4205.1prot_M-pyrifera_M_contig120397.4205.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120397 1..536 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120397.4205.1

>prot_M-pyrifera_M_contig120397.4205.1 ID=prot_M-pyrifera_M_contig120397.4205.1|Name=mRNA_M-pyrifera_M_contig120397.4205.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=119bp
FSELKDLGSDWEHLGFLGPPLHAEVGDSFEIHFRNNARYSFSMYPAGLSH
EQADDDGAAVPPGGEYVYRWDVPGSVGPAPGDWSSTMYQYYSTVDQTADI
VAGLVGPIIVTAQGMADGD
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mRNA from alignment at M-pyrifera_M_contig120397:1..536+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120397.4205.1 ID=mRNA_M-pyrifera_M_contig120397.4205.1|Name=mRNA_M-pyrifera_M_contig120397.4205.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=536bp|location=Sequence derived from alignment at M-pyrifera_M_contig120397:1..536+ (Macrocystis pyrifera P11B4 male)
TTTTCAGAGCTGAAGGACCTGGGCTCCGACTGGGAGCACCTCGGCTTCCT CGGCCCTCCCCTCCACGCCGAAGTGGGCGACAGCTTTGAAGTACGACTCC CCCTCTCGCTCCCTGGCTGGCTCCGTGGGAGCCGACGGGCACCCACCACT GCGCATGGTTGAACTGCCCTTCCCTTTACGTTCTTTTATTGGTTTATCTT TCATTTGAGTCCGTCGCTCGCGCGCTTCGCGGAGTGAAGATCACCGCCCC AGTCACTGACCCGGGCCAGATCCACTTCAGAAACAACGCTCGCTACAGTT TCTCGATGTACCCCGCGGGCTTGAGCCACGAGCAGGCAGACGACGACGGT GCGGCCGTCCCGCCTGGCGGCGAGTACGTCTACCGCTGGGACGTGCCCGG CAGCGTGGGCCCGGCGCCAGGCGACTGGAGCTCGACGATGTACCAGTACT ACTCCACCGTCGACCAGACGGCAGACATCGTGGCCGGCCTCGTGGGGCCC ATCATCGTCACTGCCCAGGGCATGGCCGACGGCGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120397:1..536+

>mRNA_M-pyrifera_M_contig120397.4205.1 ID=mRNA_M-pyrifera_M_contig120397.4205.1|Name=mRNA_M-pyrifera_M_contig120397.4205.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=714bp|location=Sequence derived from alignment at M-pyrifera_M_contig120397:1..536+ (Macrocystis pyrifera P11B4 male)
TTTTCAGAGCTGAAGGACCTGGGCTCCGACTGGGAGCACCTCGGCTTCCT
CGGCCCTCCCCTCCACGCCGAAGTGGGCGACAGCTTTGAATTTTCAGAGC
TGAAGGACCTGGGCTCCGACTGGGAGCACCTCGGCTTCCTCGGCCCTCCC
CTCCACGCCGAAGTGGGCGACAGCTTTGAAATCCACTTCAGAAACAACGC
TCGCTACAGTTTCTCGATGTACCCCGCGGGCTTGAGCCACGAGCAGGCAG
ACGACGACGGTGCGGCCGTCCCGCCTGGCGGCGAGTACGTCTACCGCTGG
GACGTGCCCGGCAGCGTGGGCCCGGCGCCAGGCGACTGGAGCTCGACGAT
GTACCAGTACTACTCCACCGTCGACCAGACGGCAGACATCGTGGCCGGCC
TCGTGGGGCCCATCATCGTCACTGCCCAGGGCATGGCCGACGGCGACATC
CACTTCAGAAACAACGCTCGCTACAGTTTCTCGATGTACCCCGCGGGCTT
GAGCCACGAGCAGGCAGACGACGACGGTGCGGCCGTCCCGCCTGGCGGCG
AGTACGTCTACCGCTGGGACGTGCCCGGCAGCGTGGGCCCGGCGCCAGGC
GACTGGAGCTCGACGATGTACCAGTACTACTCCACCGTCGACCAGACGGC
AGACATCGTGGCCGGCCTCGTGGGGCCCATCATCGTCACTGCCCAGGGCA
TGGCCGACGGCGAC
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