mRNA_M-pyrifera_M_contig120383.4203.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120383.4203.1
Unique NamemRNA_M-pyrifera_M_contig120383.4203.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig120383.4203.1 vs. uniprot
Match: A0A5C7J9R6_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Candidatus Dojkabacteria bacterium TaxID=2099670 RepID=A0A5C7J9R6_9BACT)

HSP 1 Score: 57.4 bits (137), Expect = 4.860e-7
Identity = 46/135 (34.07%), Postives = 73/135 (54.07%), Query Frame = 1 
Query:    1 MHTLSKTAPGATAVACGDLDGASAEDVVV---GFESGRAVVYFN---NNNGESFTPVVVRSEATPVIAVGIGRFNTDVHPDVIVAH--TDRIVYLPGTS---TTSFGQPLTIRI-SDIKAAAVGDVNEDGRVDVV 369
            + TL+        VA GD DG    D+VV      SG   V+ N   ++N  SF+   V + AT +I VG+G F++D   D++ A+  ++++++L   S   T SFG  + + + S     AVGD+++DGR DVV
Sbjct: 1082 LQTLTSAYTDRYGVAIGDFDGDGWPDIVVDAYNANSGAVSVFRNVTASSNTLSFSAEQVVATATGMIGVGVGDFDSDGRTDIVAANYGSNQVLFLRNLSVSGTISFGSGVGVAVGSQPWGLAVGDLDKDGRPDVV 1216
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BLAST of mRNA_M-pyrifera_M_contig120383.4203.1 vs. uniprot
Match: A0A4Q5RHS7_9BACT (T9SS type A sorting domain-containing protein n=1 Tax=Cytophagaceae bacterium TaxID=2026729 RepID=A0A4Q5RHS7_9BACT)

HSP 1 Score: 51.6 bits (122), Expect = 4.510e-5
Identity = 38/120 (31.67%), Postives = 59/120 (49.17%), Query Frame = 1 
Query:   28 GATAVACGDLDGASAEDVVVGFESGRAVVYFNNNNGE-SFTPVVVRSEATPVIAVGIGRFNTDVHPDVIVAHT--DRIVYLPGTSTTSFGQPLTIRI---SDIKAAAVGDVNEDGRVDVV 369
            G  ++  GDL+G S  D++ G   G   V  N+  G    +P    +  + V  V +G  N D   DV  A+T  + +  L GT T + G   +      S + + A+GD+N+DGR+DVV
Sbjct:  190 GIQSITAGDLNGDSKPDIIFGASGGSVGVLLNSGTGTFPGSPTSYPTGGSSVQRVKVGDVNNDGKLDVATANTFENTVSILLGTGTGTLGTAASYSAGSNSGLTSVALGDLNKDGRLDVV 309
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120383.4203.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A5C7J9R6_9BACT4.860e-734.07Uncharacterized protein (Fragment) n=1 Tax=Candida... [more]
A0A4Q5RHS7_9BACT4.510e-531.67T9SS type A sorting domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120383contigM-pyrifera_M_contig120383:41..415 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size375
Cds size375
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815723.2403388-CDS-M-pyrifera_M_contig120383:40..4151622815723.2403388-CDS-M-pyrifera_M_contig120383:40..415Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120383 41..415 +
1692277538.7706046-CDS-M-pyrifera_M_contig120383:40..4151692277538.7706046-CDS-M-pyrifera_M_contig120383:40..415Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120383 41..415 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120383.4203.1prot_M-pyrifera_M_contig120383.4203.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120383 41..415 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120383.4203.1

>prot_M-pyrifera_M_contig120383.4203.1 ID=prot_M-pyrifera_M_contig120383.4203.1|Name=mRNA_M-pyrifera_M_contig120383.4203.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=125bp
MHTLSKTAPGATAVACGDLDGASAEDVVVGFESGRAVVYFNNNNGESFTP
VVVRSEATPVIAVGIGRFNTDVHPDVIVAHTDRIVYLPGTSTTSFGQPLT
IRISDIKAAAVGDVNEDGRVDVVYL
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mRNA from alignment at M-pyrifera_M_contig120383:41..415+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120383.4203.1 ID=mRNA_M-pyrifera_M_contig120383.4203.1|Name=mRNA_M-pyrifera_M_contig120383.4203.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=375bp|location=Sequence derived from alignment at M-pyrifera_M_contig120383:41..415+ (Macrocystis pyrifera P11B4 male)
ATGCACACCCTATCCAAGACCGCTCCTGGCGCCACAGCGGTCGCCTGCGG
AGACCTCGACGGTGCCAGCGCGGAGGACGTTGTTGTCGGCTTCGAAAGCG
GCCGAGCTGTTGTGTACTTCAACAACAACAACGGCGAGTCCTTCACTCCA
GTGGTAGTCCGATCCGAGGCAACCCCTGTCATTGCAGTCGGAATCGGGCG
GTTTAACACCGATGTCCATCCAGATGTCATCGTTGCGCACACCGACCGCA
TCGTGTACCTGCCCGGCACCTCCACCACCTCCTTCGGTCAACCTCTCACC
ATCCGCATCTCCGACATCAAGGCAGCCGCTGTTGGCGACGTGAATGAGGA
TGGCAGAGTAGACGTTGTATACCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120383:41..415+

>mRNA_M-pyrifera_M_contig120383.4203.1 ID=mRNA_M-pyrifera_M_contig120383.4203.1|Name=mRNA_M-pyrifera_M_contig120383.4203.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=750bp|location=Sequence derived from alignment at M-pyrifera_M_contig120383:41..415+ (Macrocystis pyrifera P11B4 male)
ATGCACACCCTATCCAAGACCGCTCCTGGCGCCACAGCGGTCGCCTGCGG
AGACCTCGACGGTGCCAGCGCGGAGGACGTTGTTGTCGGCTTCGAAAGCG
GCCGAGCTGTTGTGTACTTCAACAACAACAACGGCGAGTCCTTCACTCCA
GTGGTAGTCCGATCCGAGGCAACCCCTGTCATTGCAGTCGGAATCGGGCG
GTTTAACACCGATGTCCATCCAGATGTCATCGTTGCGCACACCGACCGCA
TCGTGTACCTGCCCGGCACCTCCACCACCTCCTTCGGTCAACCTCTCACC
ATCCGCATCTCCGACATCAAGGCAGCCGCTGTTGGCGACGTGAATGAGGA
TGGCAGAGTAGACGTTGTATACCTCATGCACACCCTATCCAAGACCGCTC
CTGGCGCCACAGCGGTCGCCTGCGGAGACCTCGACGGTGCCAGCGCGGAG
GACGTTGTTGTCGGCTTCGAAAGCGGCCGAGCTGTTGTGTACTTCAACAA
CAACAACGGCGAGTCCTTCACTCCAGTGGTAGTCCGATCCGAGGCAACCC
CTGTCATTGCAGTCGGAATCGGGCGGTTTAACACCGATGTCCATCCAGAT
GTCATCGTTGCGCACACCGACCGCATCGTGTACCTGCCCGGCACCTCCAC
CACCTCCTTCGGTCAACCTCTCACCATCCGCATCTCCGACATCAAGGCAG
CCGCTGTTGGCGACGTGAATGAGGATGGCAGAGTAGACGTTGTATACCTC
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