mRNA_M-pyrifera_M_contig120382.4202.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120382.4202.1
Unique NamemRNA_M-pyrifera_M_contig120382.4202.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig120382.4202.1 vs. uniprot
Match: A0A5S6QXJ1_TRIMR (Uncharacterized protein n=2 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QXJ1_TRIMR)

HSP 1 Score: 56.2 bits (134), Expect = 3.390e-6
Identity = 45/164 (27.44%), Postives = 89/164 (54.27%), Query Frame = 1 
Query:   13 ETLSFPAYSERASTMVQLAILGALAKLHAFSM-------EGEVATVLRDLLAPSLPQLRLLWVSLLRDFAILSTQTLY-TQKAYKGAFYSFSSIAFVLDYYKSIWREVLLASASLVTSSQAWVVQDSRAVAGEAATKSPAQRALDDWF-LLLGLCMQAFAETQN 477
            E++S   Y+E +  + +LAIL A A+++  +M       E   +  L +L+ P L  L   W+S+L+DFA+LS  + + +Q   +GA+++ S+   V  +Y+  W  VLLA+++ ++++     +     +G  A  S    + +DWF +L+G+ M+     ++
Sbjct: 1380 ESVSVHLYNESSIALEKLAILKAWAEVYIVAMQQNSGGNESCYSEALLELVNPELTTLIDHWLSVLKDFALLSLPSEFASQLPEEGAYFTLSTAELVRPFYRDAWAAVLLAASTWLSNNNFEFCRADSISSG--AKPSDEGYSKEDWFYILIGISMETLCNPRS 1541
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BLAST of mRNA_M-pyrifera_M_contig120382.4202.1 vs. uniprot
Match: Q54U23_DICDI (Uncharacterized protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54U23_DICDI)

HSP 1 Score: 55.5 bits (132), Expect = 6.270e-6
Identity = 31/113 (27.43%), Postives = 70/113 (61.95%), Query Frame = 1 
Query:    1 IESVETLSFPAYSERASTMVQLAILGALAKLHAFSMEGE-VATVLRDLLAPSLPQLRLLWVSLLRDFAILSTQTLYTQKAYKGAFYSFSSIAFVLDYYKSIWREVLLASASLV 336
            ++ + TL+FP Y+E+ +T+VQ++IL A A+L+   ++ + + ++L  ++ P L  LR+ W++ L+++++L +Q+      YK   +S  +    ++Y+K  +  V+ A + L+
Sbjct: 1489 VKDLRTLNFPIYNEKTTTLVQVSILKAFAQLYLLCLKDQSLYSILSSVINPLLIYLRVHWITFLKEYSMLVSQSPQIFPLYKPILFSPLTYQDSIEYFKDAYPSVIKALSYLL 1601
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120382.4202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A5S6QXJ1_TRIMR3.390e-627.44Uncharacterized protein n=2 Tax=Trichuris muris Ta... [more]
Q54U23_DICDI6.270e-627.43Uncharacterized protein n=1 Tax=Dictyostelium disc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120382contigM-pyrifera_M_contig120382:63..539 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size477
Cds size477
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815723.1978579-CDS-M-pyrifera_M_contig120382:62..5391622815723.1978579-CDS-M-pyrifera_M_contig120382:62..539Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120382 63..539 -
1692277538.762842-CDS-M-pyrifera_M_contig120382:62..5391692277538.762842-CDS-M-pyrifera_M_contig120382:62..539Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120382 63..539 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120382.4202.1prot_M-pyrifera_M_contig120382.4202.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120382 63..539 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120382.4202.1

>prot_M-pyrifera_M_contig120382.4202.1 ID=prot_M-pyrifera_M_contig120382.4202.1|Name=mRNA_M-pyrifera_M_contig120382.4202.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=159bp
IESVETLSFPAYSERASTMVQLAILGALAKLHAFSMEGEVATVLRDLLAP
SLPQLRLLWVSLLRDFAILSTQTLYTQKAYKGAFYSFSSIAFVLDYYKSI
WREVLLASASLVTSSQAWVVQDSRAVAGEAATKSPAQRALDDWFLLLGLC
MQAFAETQN
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mRNA from alignment at M-pyrifera_M_contig120382:63..539-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120382.4202.1 ID=mRNA_M-pyrifera_M_contig120382.4202.1|Name=mRNA_M-pyrifera_M_contig120382.4202.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=477bp|location=Sequence derived from alignment at M-pyrifera_M_contig120382:63..539- (Macrocystis pyrifera P11B4 male)
ATCGAGTCTGTCGAGACACTCTCCTTCCCTGCCTATAGCGAGAGGGCCTC
GACGATGGTGCAACTGGCCATCTTGGGCGCACTGGCCAAGCTGCACGCCT
TCTCCATGGAGGGAGAGGTGGCGACTGTTCTTCGTGATCTCTTGGCTCCC
TCTCTTCCTCAACTGAGGCTCCTGTGGGTGTCGCTCCTCCGCGACTTTGC
CATTCTCTCTACGCAGACCCTCTACACGCAGAAGGCCTACAAGGGCGCCT
TCTACAGCTTCTCCTCCATTGCCTTCGTCCTCGACTACTACAAGAGCATC
TGGCGGGAGGTATTGCTGGCCTCGGCCTCGCTCGTCACCTCCTCACAGGC
CTGGGTCGTCCAGGACTCACGTGCTGTTGCAGGCGAGGCTGCCACCAAGT
CCCCTGCTCAGAGGGCCCTGGATGATTGGTTCCTTCTCCTTGGTCTCTGC
ATGCAGGCCTTTGCCGAGACCCAGAAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120382:63..539-

>mRNA_M-pyrifera_M_contig120382.4202.1 ID=mRNA_M-pyrifera_M_contig120382.4202.1|Name=mRNA_M-pyrifera_M_contig120382.4202.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=954bp|location=Sequence derived from alignment at M-pyrifera_M_contig120382:63..539- (Macrocystis pyrifera P11B4 male)
ATCGAGTCTGTCGAGACACTCTCCTTCCCTGCCTATAGCGAGAGGGCCTC
GACGATGGTGCAACTGGCCATCTTGGGCGCACTGGCCAAGCTGCACGCCT
TCTCCATGGAGGGAGAGGTGGCGACTGTTCTTCGTGATCTCTTGGCTCCC
TCTCTTCCTCAACTGAGGCTCCTGTGGGTGTCGCTCCTCCGCGACTTTGC
CATTCTCTCTACGCAGACCCTCTACACGCAGAAGGCCTACAAGGGCGCCT
TCTACAGCTTCTCCTCCATTGCCTTCGTCCTCGACTACTACAAGAGCATC
TGGCGGGAGGTATTGCTGGCCTCGGCCTCGCTCGTCACCTCCTCACAGGC
CTGGGTCGTCCAGGACTCACGTGCTGTTGCAGGCGAGGCTGCCACCAAGT
CCCCTGCTCAGAGGGCCCTGGATGATTGGTTCCTTCTCCTTGGTCTCTGC
ATGCAGGCCTTTGCCGAGACCCAGAACATCGAGTCTGTCGAGACACTCTC
CTTCCCTGCCTATAGCGAGAGGGCCTCGACGATGGTGCAACTGGCCATCT
TGGGCGCACTGGCCAAGCTGCACGCCTTCTCCATGGAGGGAGAGGTGGCG
ACTGTTCTTCGTGATCTCTTGGCTCCCTCTCTTCCTCAACTGAGGCTCCT
GTGGGTGTCGCTCCTCCGCGACTTTGCCATTCTCTCTACGCAGACCCTCT
ACACGCAGAAGGCCTACAAGGGCGCCTTCTACAGCTTCTCCTCCATTGCC
TTCGTCCTCGACTACTACAAGAGCATCTGGCGGGAGGTATTGCTGGCCTC
GGCCTCGCTCGTCACCTCCTCACAGGCCTGGGTCGTCCAGGACTCACGTG
CTGTTGCAGGCGAGGCTGCCACCAAGTCCCCTGCTCAGAGGGCCCTGGAT
GATTGGTTCCTTCTCCTTGGTCTCTGCATGCAGGCCTTTGCCGAGACCCA
GAAC
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