mRNA_M-pyrifera_M_contig120373.4198.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120373.4198.1
Unique NamemRNA_M-pyrifera_M_contig120373.4198.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig120373.4198.1 vs. uniprot
Match: A0A0D2WWW8_CAPO3 (E3 ubiquitin protein ligase n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WWW8_CAPO3)

HSP 1 Score: 57.8 bits (138), Expect = 6.510e-8
Identity = 32/69 (46.38%), Postives = 49/69 (71.01%), Query Frame = 1 
Query:   22 LIAEIDSIGEELRKMQEQNARLAKQMAEKDDANAQLMSERIQGKMQEGLLKKEAQLEQQRAAVLDEKVQ 228
            LIAE+DSIG+  + MQEQN+RL +Q+ EKDDAN QLMSER++    + +L+ E  + + + A +  +V+
Sbjct:   77 LIAEMDSIGQSFQDMQEQNSRLLQQLNEKDDANFQLMSERLKASQLQQMLRDEKDIIEGKMAAMQAQVE 145
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120373.4198.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0D2WWW8_CAPO36.510e-846.38E3 ubiquitin protein ligase n=1 Tax=Capsaspora owc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120373contigM-pyrifera_M_contig120373:123..368 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size246
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815723.0175557-CDS-M-pyrifera_M_contig120373:122..3681622815723.0175557-CDS-M-pyrifera_M_contig120373:122..368Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120373 123..368 +
1692277538.6826224-CDS-M-pyrifera_M_contig120373:122..3681692277538.6826224-CDS-M-pyrifera_M_contig120373:122..368Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120373 123..368 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120373.4198.1prot_M-pyrifera_M_contig120373.4198.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120373 123..368 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120373.4198.1

>prot_M-pyrifera_M_contig120373.4198.1 ID=prot_M-pyrifera_M_contig120373.4198.1|Name=mRNA_M-pyrifera_M_contig120373.4198.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=82bp
GAEAEEELIAEIDSIGEELRKMQEQNARLAKQMAEKDDANAQLMSERIQG
KMQEGLLKKEAQLEQQRAAVLDEKVQQLERLA
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mRNA from alignment at M-pyrifera_M_contig120373:123..368+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120373.4198.1 ID=mRNA_M-pyrifera_M_contig120373.4198.1|Name=mRNA_M-pyrifera_M_contig120373.4198.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=246bp|location=Sequence derived from alignment at M-pyrifera_M_contig120373:123..368+ (Macrocystis pyrifera P11B4 male)
GGGGCAGAGGCAGAGGAGGAGCTCATCGCAGAGATCGACTCGATCGGCGA
AGAGCTCCGCAAAATGCAGGAGCAAAACGCACGGCTGGCGAAGCAAATGG
CCGAGAAGGACGACGCCAACGCCCAGCTGATGTCGGAGCGCATCCAGGGG
AAGATGCAGGAGGGCCTCCTCAAGAAGGAGGCGCAGCTCGAGCAGCAGCG
CGCCGCCGTCCTCGACGAGAAGGTGCAGCAGCTCGAGCGCCTCGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120373:123..368+

>mRNA_M-pyrifera_M_contig120373.4198.1 ID=mRNA_M-pyrifera_M_contig120373.4198.1|Name=mRNA_M-pyrifera_M_contig120373.4198.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=492bp|location=Sequence derived from alignment at M-pyrifera_M_contig120373:123..368+ (Macrocystis pyrifera P11B4 male)
GGGGCAGAGGCAGAGGAGGAGCTCATCGCAGAGATCGACTCGATCGGCGA
AGAGCTCCGCAAAATGCAGGAGCAAAACGCACGGCTGGCGAAGCAAATGG
CCGAGAAGGACGACGCCAACGCCCAGCTGATGTCGGAGCGCATCCAGGGG
AAGATGCAGGAGGGCCTCCTCAAGAAGGAGGCGCAGCTCGAGCAGCAGCG
CGCCGCCGTCCTCGACGAGAAGGTGCAGCAGCTCGAGCGCCTCGCCGGGG
CAGAGGCAGAGGAGGAGCTCATCGCAGAGATCGACTCGATCGGCGAAGAG
CTCCGCAAAATGCAGGAGCAAAACGCACGGCTGGCGAAGCAAATGGCCGA
GAAGGACGACGCCAACGCCCAGCTGATGTCGGAGCGCATCCAGGGGAAGA
TGCAGGAGGGCCTCCTCAAGAAGGAGGCGCAGCTCGAGCAGCAGCGCGCC
GCCGTCCTCGACGAGAAGGTGCAGCAGCTCGAGCGCCTCGCC
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