mRNA_M-pyrifera_M_contig12037.4197.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12037.4197.1
Unique NamemRNA_M-pyrifera_M_contig12037.4197.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12037.4197.1 vs. uniprot
Match: D8LJK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJK8_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 4.680e-40
Identity = 88/177 (49.72%), Postives = 105/177 (59.32%), Query Frame = 1 
Query:    1 LWDLRKTDSSLLEYTGHTQDTTACVFLDGEIIGGGGAGGEIEGRGGXXXAGGGTELDDWCTFPMIATASKDGTIKIFDRATGNIILDHIEPESGGYTGLSVHHDPATNRSAFYAATITGGLYVLRLETEAVGSGGQGTGDXXXXXXXXXXDXXRGLGGGLSGLALRCVGFVQGYPIL 531
            LWDLR     + EYTGHTQDTTACVF+  +  G GG+G    G G          L    +  MIATASKDGT+KI+D A G+I++DH+EPE GGYTGL++  D  T    FYA+TITGGLY LRLE +   +G   T                GLG G  GL LRCVGFV+G PIL
Sbjct:  147 LWDLRSPGIPVREYTGHTQDTTACVFVTSKEGGDGGSGAREGGYG--LSPAPWPSLSAPSSRGMIATASKDGTVKIYDLADGSILVDHVEPECGGYTGLAIQRDSRTGGPVFYASTITGGLYALRLEEKVATAGTSRT----------------GLGEG--GLRLRCVGFVRGNPIL 303
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BLAST of mRNA_M-pyrifera_M_contig12037.4197.1 vs. uniprot
Match: A0A6H5JBE9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE9_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 6.120e-39
Identity = 86/177 (48.59%), Postives = 103/177 (58.19%), Query Frame = 1 
Query:    1 LWDLRKTDSSLLEYTGHTQDTTACVFLDGEIIGGGGAGGEIEGRGGXXXAGGGTELDDWCTFPMIATASKDGTIKIFDRATGNIILDHIEPESGGYTGLSVHHDPATNRSAFYAATITGGLYVLRLETEAVGSGGQGTGDXXXXXXXXXXDXXRGLGGGLSGLALRCVGFVQGYPIL 531
            LWDLR     + EYTGHTQDTTACVF+  +  G  G+G E  G G        T L    +  MIATASKDGT+KI+D A G+I++DH+EPE GGYTGL++  D  T    FYA+TITGGLY LRLE E   +    T            +   G      GL LRCVGFV+G PIL
Sbjct:  154 LWDLRSPGIPVREYTGHTQDTTACVFVTSKEGGDDGSGVEENGYGVSPSPS--TSLSAPSSRGMIATASKDGTVKIYDLADGSILVDHVEPECGGYTGLAIQRDSRTGAPVFYASTITGGLYALRLEEEVATAAQSQT------------ELQEG------GLRLRCVGFVRGNPIL 310
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BLAST of mRNA_M-pyrifera_M_contig12037.4197.1 vs. uniprot
Match: A0A5D6Y005_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y005_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.830e-9
Identity = 39/124 (31.45%), Postives = 56/124 (45.16%), Query Frame = 1 
Query:    1 LWDLRKTDSSLLEYTGHTQDTTACVFLDGEIIGGGGAGGEIEGRGGXXXAGGGTELDDWCTFPMIATASKDGTIKIFDRATGNIILDHIEPESGGYTGLSVHHDPATNRSAFYAATITGGLYVL 372
            +WD R+T   LLE++GH QD T+C FL G                           D     P+  TASKDGT+K++D A   ++ +  EP  G +TGL      A + S   A+T  G ++  
Sbjct:  278 VWD-RRTGKQLLEFSGHQQDATSCCFLPGTS-------------------------DSQSAIPIPVTASKDGTVKVWDAAASRVLCEASEPTGGMFTGLC-----AVSGSTLLASTFHGAVHAF 370
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BLAST of mRNA_M-pyrifera_M_contig12037.4197.1 vs. uniprot
Match: A0A2I0LSY1_COLLI (WD repeat domain 31 n=5 Tax=Columbidae TaxID=8930 RepID=A0A2I0LSY1_COLLI)

HSP 1 Score: 63.2 bits (152), Expect = 1.520e-8
Identity = 42/131 (32.06%), Postives = 57/131 (43.51%), Query Frame = 1 
Query:    1 LWDLRKTDSSLLEYTGHTQDTTACVFL-DGEIIGGGGAGGEIEGRGGXXXAGGGTELDDWCTFPMIATASKDGTIKIFDRATGNIILDHIEPESGGYTGLSVHHDPATNRSAFYAATITGGLYVLRLETEA 390
            LWDLR+T + + EY GH Q  T+CVFL  G                                 P +ATAS DGT+K++DR TG  +     P SG    L+     A   S    A++  G++VLR+   A
Sbjct:  234 LWDLRQTRNQVCEYKGHFQTMTSCVFLPQGPAF-----------------------------TPSVATASCDGTVKVWDRDTGACLATSCPPGSGPLASLA-----ACAGSTLLCASLNSGIHVLRVSDRA 330
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BLAST of mRNA_M-pyrifera_M_contig12037.4197.1 vs. uniprot
Match: UPI000854581F (WD repeat-containing protein 31 isoform X1 n=3 Tax=Ranoidea TaxID=30352 RepID=UPI000854581F)

HSP 1 Score: 63.2 bits (152), Expect = 1.530e-8
Identity = 41/128 (32.03%), Postives = 60/128 (46.88%), Query Frame = 1 
Query:    1 LWDLRKTDSSLLEYTGHTQDTTACVFLDGEIIGGGGAGGEIEGRGGXXXAGGGTELDDWCTFPMIATASKDGTIKIFDRATGNIILDHIEPESGGYTGLSVHHDPATNRSAFYAATITGGLYVLRLET 384
            LWDLR+T   + EY GH Q TT+CVFL                             + W T P++ATAS D T+KI++R TG  +       SG  + L+V  D     S+   A+   G++ LR+++
Sbjct:  237 LWDLRQTKDKVCEYKGHLQSTTSCVFL---------------------------AKNTWDT-PLVATASHDCTVKIWERDTGACLSSLCLDGSGPLSSLAVCDD-----SSILVASFNSGIHSLRMQS 331
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BLAST of mRNA_M-pyrifera_M_contig12037.4197.1 vs. uniprot
Match: K3WSF6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSF6_GLOUD)

HSP 1 Score: 58.5 bits (140), Expect = 6.380e-7
Identity = 33/109 (30.28%), Postives = 51/109 (46.79%), Query Frame = 1 
Query:    1 LWDLRKTDSSLLEYTGHTQDTTACVFLDGEIIGGGGAGGEIEGRGGXXXAGGGTELDDWCT----------FPMIATASKDGTIKIFDRATGNIILDHIEPESGGYTGL 297
            +WD R+T   L E+ GH QDTT+C FL                         G+  +D  T           P+  TASKDG++K++D AT +++ + +EP  G +T +
Sbjct:  235 IWD-RRTGKQLYEFNGHQQDTTSCCFLPSAT---------------------GSSSNDSVTSPADSVRASAIPIPVTASKDGSVKVWDAATSSVLCEALEPSGGMFTSI 321
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BLAST of mRNA_M-pyrifera_M_contig12037.4197.1 vs. uniprot
Match: A0A822AZ23_9NEOB ((mimic poison frog) hypothetical protein (Fragment) n=1 Tax=Ranitomeya imitator TaxID=111125 RepID=A0A822AZ23_9NEOB)

HSP 1 Score: 57.0 bits (136), Expect = 2.250e-6
Identity = 39/127 (30.71%), Postives = 55/127 (43.31%), Query Frame = 1 
Query:    1 LWDLRKTDSSLLEYTGHTQDTTACVFLDGEIIGGGGAGGEIEGRGGXXXAGGGTELDDWCTFPMIATASKDGTIKIFDRATGNIILDHIEPESGGYTGLSVHHDPATNRSAFYAATITGGLYVLRLE 381
            LWDLRKT   + EY GH Q TT+CVFL    IG                          C  P++ATAS D T+KI++R T   +       SG  + L+V      + S+    +   G+  L ++
Sbjct:  271 LWDLRKTKDIVCEYKGHLQSTTSCVFLP---IG-------------------------TCDTPLVATASHDCTVKIWERDTAVCVSSLFLEGSGPLSSLAV-----CDNSSILCGSFNSGIQSLHID 364
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BLAST of mRNA_M-pyrifera_M_contig12037.4197.1 vs. uniprot
Match: A0A7K5YEE2_9AVES (WDR31 protein (Fragment) n=1 Tax=Pterocles burchelli TaxID=2585816 RepID=A0A7K5YEE2_9AVES)

HSP 1 Score: 53.5 bits (127), Expect = 2.800e-5
Identity = 34/82 (41.46%), Postives = 39/82 (47.56%), Query Frame = 1 
Query:    1 LWDLRKTDSSLLEYTGHTQDTTACVFLDGEIIGGGGAGGEIEGRGGXXXAGGGTELDDWCTFPMIATASKDGTIKIFDRATG 246
            LWDLR+T   L EY GH Q TT+CVFL                RG                 P IATAS DGT+K++DR TG
Sbjct:  222 LWDLRQTRGWLCEYKGHFQTTTSCVFLP---------------RGAALP-------------PGIATASSDGTVKVWDRDTG 275
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12037.4197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LJK8_ECTSI4.680e-4049.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JBE9_9PHAE6.120e-3948.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A5D6Y005_9STRA1.830e-931.45Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A2I0LSY1_COLLI1.520e-832.06WD repeat domain 31 n=5 Tax=Columbidae TaxID=8930 ... [more]
UPI000854581F1.530e-832.03WD repeat-containing protein 31 isoform X1 n=3 Tax... [more]
K3WSF6_GLOUD6.380e-730.28Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A822AZ23_9NEOB2.250e-630.71(mimic poison frog) hypothetical protein (Fragment... [more]
A0A7K5YEE2_9AVES2.800e-541.46WDR31 protein (Fragment) n=1 Tax=Pterocles burchel... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12037contigM-pyrifera_M_contig12037:224..1993 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.1
Seed ortholog evalue7.7e-33
Seed eggNOG ortholog2880.D8LJK8
Preferred nameWDR31
Hectar predicted targeting categoryother localisation
EggNOG free text desc.positive regulation of Golgi to plasma membrane protein transport
EggNOG OGsKOG0279@1,KOG0279@2759
Ec32 ortholog descriptionWD40/YVTN repeat-like-containing domain
Ec32 orthologEc-17_002380.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size534
Cds size534
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12037.4197.1prot_M-pyrifera_M_contig12037.4197.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12037 224..1993 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815722.9526644-CDS-M-pyrifera_M_contig12037:223..3091622815722.9526644-CDS-M-pyrifera_M_contig12037:223..309Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12037 224..309 +
1692277538.648389-CDS-M-pyrifera_M_contig12037:223..3091692277538.648389-CDS-M-pyrifera_M_contig12037:223..309Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12037 224..309 +
1622815722.965598-CDS-M-pyrifera_M_contig12037:456..6141622815722.965598-CDS-M-pyrifera_M_contig12037:456..614Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12037 457..614 +
1692277538.662376-CDS-M-pyrifera_M_contig12037:456..6141692277538.662376-CDS-M-pyrifera_M_contig12037:456..614Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12037 457..614 +
1622815722.976525-CDS-M-pyrifera_M_contig12037:1703..19931622815722.976525-CDS-M-pyrifera_M_contig12037:1703..1993Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12037 1704..1993 +
1692277538.672657-CDS-M-pyrifera_M_contig12037:1703..19931692277538.672657-CDS-M-pyrifera_M_contig12037:1703..1993Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12037 1704..1993 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12037.4197.1

>prot_M-pyrifera_M_contig12037.4197.1 ID=prot_M-pyrifera_M_contig12037.4197.1|Name=mRNA_M-pyrifera_M_contig12037.4197.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=178bp
LWDLRKTDSSLLEYTGHTQDTTACVFLDGEIIGGGGAGGEIEGRGGEGGA
GGGTELDDWCTFPMIATASKDGTIKIFDRATGNIILDHIEPESGGYTGLS
VHHDPATNRSAFYAATITGGLYVLRLETEAVGSGGQGTGDGQGGVEGQGW
DRGRGLGGGLSGLALRCVGFVQGYPIL*
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mRNA from alignment at M-pyrifera_M_contig12037:224..1993+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12037.4197.1 ID=mRNA_M-pyrifera_M_contig12037.4197.1|Name=mRNA_M-pyrifera_M_contig12037.4197.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1770bp|location=Sequence derived from alignment at M-pyrifera_M_contig12037:224..1993+ (Macrocystis pyrifera P11B4 male)
CTGTGGGACCTTCGAAAGACAGACTCTTCCCTTCTGGAGTATACCGGGCA
CACCCAGGACACAACTGCCTGTGTATTTCTTGATGGGTTTGGAAACCCCG
CCGCAGGCGGAGGGGGAGGAAGCGGAGGGGGGACAGGAGAGGAAAATAGA
AGAGGAAGGGGGGGAGAAGGGGAAGGAGGGGAGAGGGAAAGAGGAGGAGG
AGGAGGAGGAGGGGGGGAGGGGAGAGAAGGTAGAGAGATAATAGGAGGAG
GAGGAGCAGGAGGGGAGATAGAGGGACGGGGAGGCGAGGGAGGGGCTGGG
GGTGGCACGGAGCTGGATGATTGGTGCACCTTCCCCATGATCGCCACAGC
TTCGAAAGATGGCACCATCAAGATATTCGACCGGGCGACCGGTGGGTAGG
GGATCATAGTTATTGGCGTTGGTGTGTTGATGTTGACATTACCGGGGACC
ATAGTAAGTAGGACCAAATACTGTTAGTAAAAAATATCCAAATATATAGG
TGTTCGTGTGTACCGTAGGTCCTGTTTAATATGCCCCCCCCCGTAATAGT
GTTGGTGATGGTATCGGTGATGTTGGTAATGTTAGTAGCAGTGGTACGAC
ACTGACTGGTGGTGCTGTACGTGTTGGGGCCCATTTCATTATGGCGCGAG
ACGGCTCCCCCCGGATATCTACGTGAGGGATTTCGAGGGGTATTCCACTA
TTTTTCTGAGGCTACAGTACTGTCGTACTACGGGGGGCCATAGTAAATGG
GACCAAATTTTGCCAGTAAAAATAGGGAAATATATAGATTTTTGTGTATA
TCGTAGGTCCTATTTACTATGGCCCTCCGTAATAGTACAGTAGTGGCAGC
AGTAGTAATATCAGTAGCAACAGCGATAGAAGCAGAAGAAGCGGAGGTAG
CAATTGGTGCGACATAACAACGAACGTATTTCCATGTTTCCGGACAAACA
ACTTACTGCTACGATAGCACCATCGGCGGGTGGCGAAGATATCAACAGTA
CCAATAACATTTTTGTCCCGAGTGCCCTCCCCGTTCCCCCCCTCCCCCCT
CCCCCGCCCCCCCCCTTCACCTCGCCCAACACATCACGGCGCTTCGCGCT
TGGTGCAAGCAATGTCTGCCCGGTCGGTGACTACCCGACGCGCTCCGTCC
CGGCATTGTAGGGACGCGAAGGTCTATGTTCATACGACTACGACCATGCA
TGACATGAACACACGCCCCCCCCCCCCCCCCCCCGCCCCCCCCCCACCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCGCAGTGCAGCGGCGCGAAGCCCTAGGTCCAACCGTCTCCGTCCA
TGCATCCCCTGAACCCCCGCCCCCCCCCCACCCCCCCTTGCCCCCCCCCC
CCCCCCCCCTCATCCCACCCCCTCGCACCCACCGCCGTATTTTTCTTTAC
CGTCTTTTGTTTACCTGCCATCGGATCCAGGAAACATTATCCTCGACCAC
ATCGAACCAGAAAGTGGCGGTTACACTGGGCTCTCCGTTCACCACGACCC
CGCAACAAATCGTTCCGCTTTTTACGCCGCCACCATCACGGGCGGGCTGT
ACGTGCTAAGGCTGGAAACGGAGGCGGTCGGGAGTGGGGGGCAGGGGACG
GGGGATGGCCAAGGAGGAGTCGAGGGGCAGGGGTGGGACCGGGGACGCGG
GCTGGGGGGGGGGCTAAGCGGGCTGGCGTTGCGCTGCGTGGGCTTTGTTC
AAGGATACCCGATTTTGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12037:224..1993+

>mRNA_M-pyrifera_M_contig12037.4197.1 ID=mRNA_M-pyrifera_M_contig12037.4197.1|Name=mRNA_M-pyrifera_M_contig12037.4197.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1068bp|location=Sequence derived from alignment at M-pyrifera_M_contig12037:224..1993+ (Macrocystis pyrifera P11B4 male)
CTGTGGGACCTTCGAAAGACAGACTCTTCCCTTCTGGAGTATACCGGGCA
CACCCAGGACACAACTGCCTGTGTATTTCTTGATGGCTGTGGGACCTTCG
AAAGACAGACTCTTCCCTTCTGGAGTATACCGGGCACACCCAGGACACAA
CTGCCTGTGTATTTCTTGATGGAGAGATAATAGGAGGAGGAGGAGCAGGA
GGGGAGATAGAGGGACGGGGAGGCGAGGGAGGGGCTGGGGGTGGCACGGA
GCTGGATGATTGGTGCACCTTCCCCATGATCGCCACAGCTTCGAAAGATG
GCACCATCAAGATATTCGACCGGGCGACCGAGAGATAATAGGAGGAGGAG
GAGCAGGAGGGGAGATAGAGGGACGGGGAGGCGAGGGAGGGGCTGGGGGT
GGCACGGAGCTGGATGATTGGTGCACCTTCCCCATGATCGCCACAGCTTC
GAAAGATGGCACCATCAAGATATTCGACCGGGCGACCGGAAACATTATCC
TCGACCACATCGAACCAGAAAGTGGCGGTTACACTGGGCTCTCCGTTCAC
CACGACCCCGCAACAAATCGTTCCGCTTTTTACGCCGCCACCATCACGGG
CGGGCTGTACGTGCTAAGGCTGGAAACGGAGGCGGTCGGGAGTGGGGGGC
AGGGGACGGGGGATGGCCAAGGAGGAGTCGAGGGGCAGGGGTGGGACCGG
GGACGCGGGCTGGGGGGGGGGCTAAGCGGGCTGGCGTTGCGCTGCGTGGG
CTTTGTTCAAGGATACCCGATTTTGTGAGAAACATTATCCTCGACCACAT
CGAACCAGAAAGTGGCGGTTACACTGGGCTCTCCGTTCACCACGACCCCG
CAACAAATCGTTCCGCTTTTTACGCCGCCACCATCACGGGCGGGCTGTAC
GTGCTAAGGCTGGAAACGGAGGCGGTCGGGAGTGGGGGGCAGGGGACGGG
GGATGGCCAAGGAGGAGTCGAGGGGCAGGGGTGGGACCGGGGACGCGGGC
TGGGGGGGGGGCTAAGCGGGCTGGCGTTGCGCTGCGTGGGCTTTGTTCAA
GGATACCCGATTTTGTGA
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