mRNA_M-pyrifera_M_contig120368.4196.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120368.4196.1
Unique NamemRNA_M-pyrifera_M_contig120368.4196.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig120368.4196.1 vs. uniprot
Match: A0A7S4IM87_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IM87_9EUKA)

HSP 1 Score: 123 bits (308), Expect = 2.310e-30
Identity = 59/111 (53.15%), Postives = 80/111 (72.07%), Query Frame = 1
Query:    4 DFIRKRLSHALCGGFGSITSFLITPVQRLPRYLLFLRELDELTPATHPDREHVDRSYELLKSVTGKIDERKNVYDAIYHKEALLMSFPPSDQRLLQDITHADRHLLAEGPL 336
            +F+ K+LS+ LC GFGS+TSFLITP+QRLPRYLL+L++L   TP  HPDR  V+++YELL  +T +ID++K  YD IYH +AL   F   D+  + +I    R L+AEGPL
Sbjct:  292 EFVNKQLSNDLCLGFGSLTSFLITPIQRLPRYLLYLKDLHSCTPEGHPDRNDVEQAYELLSKMTVQIDQQKLKYDEIYHLQALHQRFVFHDRCRVPEILDPSRKLIAEGPL 402          
BLAST of mRNA_M-pyrifera_M_contig120368.4196.1 vs. uniprot
Match: A0A6B2KZN1_9EUKA (DH domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2KZN1_9EUKA)

HSP 1 Score: 65.9 bits (159), Expect = 3.160e-10
Identity = 33/94 (35.11%), Postives = 54/94 (57.45%), Query Frame = 1
Query:    7 FIRKRLSHALCGGFGSITSFLITPVQRLPRYLLFLRELDELTPATHPDREHVDRSYELLKSVTGKIDERKNVYDAIYHKEALLMSFPPSDQRLL 288
            ++ K  +   C G  S+ SFLI PVQR+PRY L LREL+  TPA HPD  ++  + + ++ V   ++++K   +  +    L+ +F  SD  +L
Sbjct:  431 WLEKTCAQDFCSGL-SLLSFLIMPVQRMPRYSLLLRELNSSTPAGHPDEGNIKEAIQKIEYVNSYLNDKKRETEGQFKMIELISNFVESDAPIL 523          
BLAST of mRNA_M-pyrifera_M_contig120368.4196.1 vs. uniprot
Match: A0A1J4KF27_9EUKA (DH domain-containing protein n=1 Tax=Tritrichomonas foetus TaxID=1144522 RepID=A0A1J4KF27_9EUKA)

HSP 1 Score: 65.5 bits (158), Expect = 4.550e-10
Identity = 27/53 (50.94%), Postives = 42/53 (79.25%), Query Frame = 1
Query:   52 SITSFLITPVQRLPRYLLFLRELDELTPATHPDREHVDRSYELLKSVTGKIDE 210
            ++ S+LITP+QR+PRY+LFLREL + TP +HPD  ++  S E ++++T K+DE
Sbjct:  303 NLASYLITPIQRMPRYMLFLRELIKTTPNSHPDHHYLHCSLEKIQAITSKLDE 355          
BLAST of mRNA_M-pyrifera_M_contig120368.4196.1 vs. uniprot
Match: A0A7S4HVT8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HVT8_9EUKA)

HSP 1 Score: 61.6 bits (148), Expect = 8.020e-10
Identity = 31/68 (45.59%), Postives = 47/68 (69.12%), Query Frame = 1
Query:   10 IRKRLSHAL--CGGFGSITSFLITPVQRLPRYLLFLRELDELTPATHPDREHVDRSYELLKSVTGKID 207
            ++K +S  L     F SI SFLITPVQRLPRYLL L +L + TP  H D+E+++++ E ++ +T +I+
Sbjct:   59 VQKFMSEMLQRTQNFPSIQSFLITPVQRLPRYLLMLNDLKKHTPDDHSDKENLNKAVEQIQRITNQIN 126          
BLAST of mRNA_M-pyrifera_M_contig120368.4196.1 vs. uniprot
Match: L8HJB2_ACACA (Calponin domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HJB2_ACACA)

HSP 1 Score: 64.3 bits (155), Expect = 1.130e-9
Identity = 32/94 (34.04%), Postives = 52/94 (55.32%), Query Frame = 1
Query:   55 ITSFLITPVQRLPRYLLFLRELDELTPATHPDREHVDRSYELLKSVTGKIDERKNVYDAIYHKEALLMSFPPSDQRLLQDITHADRHLLAEGPL 336
            + SFLI PVQR+PRY+L L+EL++ TP  HPD  ++ +S E+L ++   I+  K   D+ +    +  S    +   +  + H  R  + EG L
Sbjct:  703 LNSFLILPVQRVPRYMLLLQELEKQTPEEHPDSPNIKKSIEILGNILDDINASKTKSDSQHKLSTIESSIAGLEALPIDTLVHPKRRYVREGVL 796          
BLAST of mRNA_M-pyrifera_M_contig120368.4196.1 vs. uniprot
Match: L8HIU1_ACACA (RhoGEF domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HIU1_ACACA)

HSP 1 Score: 63.9 bits (154), Expect = 1.440e-9
Identity = 39/109 (35.78%), Postives = 59/109 (54.13%), Query Frame = 1
Query:    4 DFIRKRLSHALCGGFGSITSFLITPVQRLPRYLLFLRELDELTPATHPDREHVDRSYELLKSVTGKIDERKNVYDAIYHKEALLMSFPPSDQRLLQDITHADRHLLAEG 330
             F+     H+ C G   + +FLITP+QRLPRY+L L+EL +LTP+ H D +++ R+   +K +T  I+  K V + +Y K   +      D  LL       R L+ EG
Sbjct:  138 QFLADANRHSDCRG-RDLPTFLITPIQRLPRYILLLQELQKLTPSKHKDYKNIGRALSDIKQMTDYINREKQVAE-MYQKLLQIQEAFVDDISLLSK----QRQLVQEG 240          
BLAST of mRNA_M-pyrifera_M_contig120368.4196.1 vs. uniprot
Match: A0A1J4L428_9EUKA (DH domain-containing protein n=1 Tax=Tritrichomonas foetus TaxID=1144522 RepID=A0A1J4L428_9EUKA)

HSP 1 Score: 63.9 bits (154), Expect = 1.560e-9
Identity = 30/52 (57.69%), Postives = 41/52 (78.85%), Query Frame = 1
Query:   55 ITSFLITPVQRLPRYLLFLRELDELTPATHPDREHVDRSYELLKSVTGKIDE 210
            ITS+LITPVQR+PRY+LFLREL + TPA+HPD   ++ +   L+ +T +IDE
Sbjct:  310 ITSYLITPVQRMPRYILFLRELIKATPASHPDSALLNAASVKLEEITHQIDE 361          
BLAST of mRNA_M-pyrifera_M_contig120368.4196.1 vs. uniprot
Match: B0EPZ4_ENTDS (Spermatogenesis-associated protein, putative n=8 Tax=Entamoeba TaxID=5758 RepID=B0EPZ4_ENTDS)

HSP 1 Score: 63.2 bits (152), Expect = 2.750e-9
Identity = 35/95 (36.84%), Postives = 58/95 (61.05%), Query Frame = 1
Query:   55 ITSFLITPVQRLPRYLLFLRELDELTPATHPDREHVDRSYELLKSVTGKID---ERKNVYDAIYHKEALLMSFPPSDQRLLQDITHADRHLLAEG 330
            I++FLITPVQRLPRY L L +L + TPA HPD E+V ++ +L+  VT  ++   +++ +++ +   +  + + P   +     I +  R LLAEG
Sbjct:  297 ISAFLITPVQRLPRYKLLLADLLKYTPACHPDHENVKQALKLITEVTITVNNNTKKREMFEKMKEYQMSITNLPEDFK-----INNGSRELLAEG 386          
BLAST of mRNA_M-pyrifera_M_contig120368.4196.1 vs. uniprot
Match: UPI0002C3D75B (spermatogenesis-associated protein, putative n=1 Tax=Entamoeba invadens IP1 TaxID=370355 RepID=UPI0002C3D75B)

HSP 1 Score: 63.2 bits (152), Expect = 2.770e-9
Identity = 31/75 (41.33%), Postives = 49/75 (65.33%), Query Frame = 1
Query:   52 SITSFLITPVQRLPRYLLFLRELDELTPATHPDREHVDRSYELLKSVTGKIDE---RKNVYDAIYHKEALLMSFP 267
            S+TSFLITP+QRLPRY LFL +L + TPA HPD + V ++  ++  VT ++++   +K + D +   +  L+  P
Sbjct:  314 SLTSFLITPIQRLPRYKLFLIDLVKCTPACHPDHDDVKKALSVISVVTSQVNDGKKQKEMLDKMKELQKRLVGVP 388          
BLAST of mRNA_M-pyrifera_M_contig120368.4196.1 vs. uniprot
Match: A0A0A1U871_ENTIV (Rho/RAC guanine nucleotide exchange factor, putative n=1 Tax=Entamoeba invadens IP1 TaxID=370355 RepID=A0A0A1U871_ENTIV)

HSP 1 Score: 62.0 bits (149), Expect = 7.180e-9
Identity = 34/76 (44.74%), Postives = 48/76 (63.16%), Query Frame = 1
Query:    4 DFIRKRLSHALCGGFGSITSFLITPVQRLPRYLLFLRELDELTPATHPDREHVDRSYELLKSVTGKIDERKNVYDA 231
            D++++ L  A  G    ++S+LI PVQRLPRY+L L EL + T   HPD + +D    L+K VT +I+E KN  DA
Sbjct:  325 DYVKQGLDEAK-GNDKDMSSYLIMPVQRLPRYVLLLNELKKHTWEGHPDGKTLDEMMVLVKRVTTEINESKNKADA 399          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120368.4196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4IM87_9EUKA2.310e-3053.15Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
A0A6B2KZN1_9EUKA3.160e-1035.11DH domain-containing protein n=1 Tax=Arcella inter... [more]
A0A1J4KF27_9EUKA4.550e-1050.94DH domain-containing protein n=1 Tax=Tritrichomona... [more]
A0A7S4HVT8_9EUKA8.020e-1045.59Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
L8HJB2_ACACA1.130e-934.04Calponin domain containing protein n=1 Tax=Acantha... [more]
L8HIU1_ACACA1.440e-935.78RhoGEF domain containing protein n=1 Tax=Acanthamo... [more]
A0A1J4L428_9EUKA1.560e-957.69DH domain-containing protein n=1 Tax=Tritrichomona... [more]
B0EPZ4_ENTDS2.750e-936.84Spermatogenesis-associated protein, putative n=8 T... [more]
UPI0002C3D75B2.770e-941.33spermatogenesis-associated protein, putative n=1 T... [more]
A0A0A1U871_ENTIV7.180e-944.74Rho/RAC guanine nucleotide exchange factor, putati... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120368contigM-pyrifera_M_contig120368:3..338 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score65.1
Seed ortholog evalue2.4e-08
Seed eggNOG ortholog5297.GMQ_01602T0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.RhoGEF domain
EggNOG OGs39WAT@33154,3P13Y@4751,3V02G@5204,COG5422@1,KOG4305@2759
Ec32 ortholog descriptionPleckstrin homology domain
Ec32 orthologEc-11_006060.1
COG Functional cat.T
Best tax levelBasidiomycota
Best eggNOG OGNA|NA|NA
Exons1
Model size336
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815722.9202268-CDS-M-pyrifera_M_contig120368:2..3381622815722.9202268-CDS-M-pyrifera_M_contig120368:2..338Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120368 3..338 +
1692277538.6347258-CDS-M-pyrifera_M_contig120368:2..3381692277538.6347258-CDS-M-pyrifera_M_contig120368:2..338Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120368 3..338 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120368.4196.1prot_M-pyrifera_M_contig120368.4196.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120368 3..338 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120368.4196.1

>prot_M-pyrifera_M_contig120368.4196.1 ID=prot_M-pyrifera_M_contig120368.4196.1|Name=mRNA_M-pyrifera_M_contig120368.4196.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=112bp
GDFIRKRLSHALCGGFGSITSFLITPVQRLPRYLLFLRELDELTPATHPD
REHVDRSYELLKSVTGKIDERKNVYDAIYHKEALLMSFPPSDQRLLQDIT
HADRHLLAEGPL
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mRNA from alignment at M-pyrifera_M_contig120368:3..338+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120368.4196.1 ID=mRNA_M-pyrifera_M_contig120368.4196.1|Name=mRNA_M-pyrifera_M_contig120368.4196.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=336bp|location=Sequence derived from alignment at M-pyrifera_M_contig120368:3..338+ (Macrocystis pyrifera P11B4 male)
GGAGACTTCATCAGGAAACGGCTCTCGCATGCTCTGTGCGGTGGCTTCGG TTCGATCACCTCCTTCCTCATTACGCCCGTGCAGCGTCTCCCTCGCTACC TTCTCTTTCTGCGCGAGCTGGATGAGCTCACGCCCGCCACCCACCCCGAT CGAGAGCACGTGGACCGCAGCTACGAACTACTGAAGAGTGTGACGGGGAA GATCGACGAGCGCAAGAACGTGTACGACGCCATCTACCACAAGGAAGCCC TTCTCATGAGCTTTCCCCCCAGCGACCAGAGGCTCCTGCAGGACATCACC CACGCAGACCGCCACCTCCTCGCAGAAGGCCCACTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120368:3..338+

>mRNA_M-pyrifera_M_contig120368.4196.1 ID=mRNA_M-pyrifera_M_contig120368.4196.1|Name=mRNA_M-pyrifera_M_contig120368.4196.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig120368:3..338+ (Macrocystis pyrifera P11B4 male)
GGAGACTTCATCAGGAAACGGCTCTCGCATGCTCTGTGCGGTGGCTTCGG
TTCGATCACCTCCTTCCTCATTACGCCCGTGCAGCGTCTCCCTCGCTACC
TTCTCTTTCTGCGCGAGCTGGATGAGCTCACGCCCGCCACCCACCCCGAT
CGAGAGCACGTGGACCGCAGCTACGAACTACTGAAGAGTGTGACGGGGAA
GATCGACGAGCGCAAGAACGTGTACGACGCCATCTACCACAAGGAAGCCC
TTCTCATGAGCTTTCCCCCCAGCGACCAGAGGCTCCTGCAGGACATCACC
CACGCAGACCGCCACCTCCTCGCAGAAGGCCCACTGGGAGACTTCATCAG
GAAACGGCTCTCGCATGCTCTGTGCGGTGGCTTCGGTTCGATCACCTCCT
TCCTCATTACGCCCGTGCAGCGTCTCCCTCGCTACCTTCTCTTTCTGCGC
GAGCTGGATGAGCTCACGCCCGCCACCCACCCCGATCGAGAGCACGTGGA
CCGCAGCTACGAACTACTGAAGAGTGTGACGGGGAAGATCGACGAGCGCA
AGAACGTGTACGACGCCATCTACCACAAGGAAGCCCTTCTCATGAGCTTT
CCCCCCAGCGACCAGAGGCTCCTGCAGGACATCACCCACGCAGACCGCCA
CCTCCTCGCAGAAGGCCCACTG
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