mRNA_M-pyrifera_M_contig120359.4194.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120359.4194.1
Unique NamemRNA_M-pyrifera_M_contig120359.4194.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig120359.4194.1 vs. uniprot
Match: UPI00073D4F42 (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial-like n=4 Tax=Vespidae TaxID=7438 RepID=UPI00073D4F42)

HSP 1 Score: 171 bits (434), Expect = 1.700e-50
Identity = 81/141 (57.45%), Postives = 109/141 (77.30%), Query Frame = 1
Query:   16 KRSLFIKTQDTPNKDALKFIPTEQKVMGEGSHEFNNATQAFCSPLAKTLFRVEGVSSVFFGPDFISVNKA-EDGDWDMMKPFVFSAIMEHYASGQPLFTEEQQATDTAIQDDDDEVVVQIKEMLEARVRPAVQDDGGDIEY 435
            KRS+FI+TQDTPN ++LKF+P  + + G G+ +F NAT A+CSPLAK LFR+EGV SVFFGPDFI++ KA ED +W ++KP +F+ IM+ +ASG P+  E Q   DT I +DDDE+V  IKE+L+ R+RP VQ+DGGDI +
Sbjct:   65 KRSMFIQTQDTPNPNSLKFLPGVKVLEGGGTKDFPNATNAYCSPLAKMLFRIEGVKSVFFGPDFITITKADEDMEWGILKPEIFATIMDFFASGLPILNESQPPPDTQINEDDDEIVQMIKELLDTRIRPTVQEDGGDIVF 205          
BLAST of mRNA_M-pyrifera_M_contig120359.4194.1 vs. uniprot
Match: A0A7S4IJI1_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IJI1_9EUKA)

HSP 1 Score: 167 bits (424), Expect = 2.440e-50
Identity = 84/143 (58.74%), Postives = 111/143 (77.62%), Query Frame = 1
Query:   13 WKRSLFIKTQDTPNKDALKFIPTEQKVMGEGSHEFNNATQAFCSPLAKTLFRVEGVSSVFFGPDFISVNKAEDGDWDMMKPFVFSAIMEHYASGQPLFTEEQQATDTAIQDDDDEVVVQIKEMLEARVRPAVQDDGGDIEYKV 441
            W+RS+FI+TQDTPN+++LKF+P E  V+ EG  EF +  +A  SPLA  LF++EGV++VFFGPDFI+VNK ED  W+++K  VF+ IME YASG+P+   E   TDT+IQ+DDDEVV QIKE+++ RVRP VQ DGG+I Y V
Sbjct:   22 WRRSMFIQTQDTPNENSLKFMPGEV-VLKEGVAEFKSYREAQQSPLANELFKIEGVTNVFFGPDFITVNKEEDTAWNVIKSDVFTKIMEFYASGEPIINLEVPVTDTSIQEDDDEVVQQIKEIIDTRVRPYVQSDGGEITYMV 163          
BLAST of mRNA_M-pyrifera_M_contig120359.4194.1 vs. uniprot
Match: A0A834PFJ4_VESPE (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial n=6 Tax=Vespinae TaxID=7439 RepID=A0A834PFJ4_VESPE)

HSP 1 Score: 170 bits (430), Expect = 6.440e-50
Identity = 79/141 (56.03%), Postives = 109/141 (77.30%), Query Frame = 1
Query:   16 KRSLFIKTQDTPNKDALKFIPTEQKVMGEGSHEFNNATQAFCSPLAKTLFRVEGVSSVFFGPDFISVNKA-EDGDWDMMKPFVFSAIMEHYASGQPLFTEEQQATDTAIQDDDDEVVVQIKEMLEARVRPAVQDDGGDIEY 435
            KR++FI+TQDTPN ++LKF+P  + + G G+ +F NAT A+CSPLAK LFR+EGV SVFFGPDFI++ K  ED +W ++KP +F+ IM+ +ASG P+  E Q + DT I +DDDE+V  IKE+L+ R+RP VQ+DGGDI +
Sbjct:   64 KRNMFIQTQDTPNPNSLKFVPGVKVLEGGGTKDFPNATDAYCSPLAKMLFRIEGVKSVFFGPDFITITKLDEDMEWGILKPEIFATIMDFFASGLPILNESQPSADTQINEDDDEIVQMIKELLDTRIRPTVQEDGGDIVF 204          
BLAST of mRNA_M-pyrifera_M_contig120359.4194.1 vs. uniprot
Match: A0A7L4FRT6_9COLU (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial (Fragment) n=16 Tax=Aves TaxID=8782 RepID=A0A7L4FRT6_9COLU)

HSP 1 Score: 168 bits (425), Expect = 6.960e-50
Identity = 81/141 (57.45%), Postives = 111/141 (78.72%), Query Frame = 1
Query:   19 RSLFIKTQDTPNKDALKFIPTEQKVMGEGSHEFNNATQAFCSPLAKTLFRVEGVSSVFFGPDFISVNK-AEDGDWDMMKPFVFSAIMEHYASGQPLFTEEQQATDTAIQDDDDEVVVQIKEMLEARVRPAVQDDGGDIEYK 438
            RS+FI+TQDTPN ++LKFIP +Q V+   + EF+    AFCSPLA+ LFR+EGV SVFFGPDFI++ K +ED DW+++KP +++ IM+ +ASG P+ T+E   TDTA  +DDDEVV+ IKE+L+ R+RP VQ+DGGD+ YK
Sbjct:   37 RSMFIQTQDTPNPNSLKFIPGKQ-VLESRTMEFSTPAAAFCSPLARQLFRIEGVKSVFFGPDFITITKESEDLDWNLLKPDIYATIMDFFASGLPVVTDEAPRTDTAASEDDDEVVLMIKELLDTRIRPTVQEDGGDVIYK 176          
BLAST of mRNA_M-pyrifera_M_contig120359.4194.1 vs. uniprot
Match: A0A7K9E776_BARMA (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial (Fragment) n=10 Tax=Neognathae TaxID=8825 RepID=A0A7K9E776_BARMA)

HSP 1 Score: 166 bits (420), Expect = 1.340e-49
Identity = 80/141 (56.74%), Postives = 111/141 (78.72%), Query Frame = 1
Query:   19 RSLFIKTQDTPNKDALKFIPTEQKVMGEGSHEFNNATQAFCSPLAKTLFRVEGVSSVFFGPDFISVNKA-EDGDWDMMKPFVFSAIMEHYASGQPLFTEEQQATDTAIQDDDDEVVVQIKEMLEARVRPAVQDDGGDIEYK 438
            RS+FI+TQDTPN ++LKFIP ++ V+   + EF+    AFCSPLA+ LFR+EGV SVFFGPDFI++ K  ED DW+++KP +++AIM+ +ASG P+ T+E   TDTA  ++DDEVV+ IKE+L+ R+RP VQ+DGGD+ YK
Sbjct:    1 RSMFIQTQDTPNPNSLKFIPGKE-VLESRTMEFSTPAAAFCSPLARQLFRIEGVKSVFFGPDFITITKENEDLDWNLLKPDIYAAIMDFFASGLPVVTDEAPRTDTAASEEDDEVVLMIKELLDTRIRPTVQEDGGDVIYK 140          
BLAST of mRNA_M-pyrifera_M_contig120359.4194.1 vs. uniprot
Match: A0A7K6TB15_CALNI (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial (Fragment) n=1 Tax=Caloenas nicobarica TaxID=187106 RepID=A0A7K6TB15_CALNI)

HSP 1 Score: 166 bits (421), Expect = 1.410e-49
Identity = 80/141 (56.74%), Postives = 110/141 (78.01%), Query Frame = 1
Query:   19 RSLFIKTQDTPNKDALKFIPTEQKVMGEGSHEFNNATQAFCSPLAKTLFRVEGVSSVFFGPDFISVNK-AEDGDWDMMKPFVFSAIMEHYASGQPLFTEEQQATDTAIQDDDDEVVVQIKEMLEARVRPAVQDDGGDIEYK 438
            R +FI+TQDTPN ++LKFIP +Q V+   + EF+    AFCSPLA+ LFR+EGV SVFFGPDFI++ K +ED DW+++KP +++ IM+ +ASG P+ T+E   TDTA  +DDDEVV+ IKE+L+ R+RP VQ+DGGD+ YK
Sbjct:    1 RGMFIQTQDTPNPNSLKFIPGKQ-VLESRTMEFSTPAAAFCSPLARQLFRIEGVKSVFFGPDFITITKESEDLDWNLLKPDIYATIMDFFASGLPVVTDEAPQTDTAASEDDDEVVLMIKELLDTRIRPTVQEDGGDVIYK 140          
BLAST of mRNA_M-pyrifera_M_contig120359.4194.1 vs. uniprot
Match: A0A540L3F9_MALBA (Nfu_N domain-containing protein n=4 Tax=Maleae TaxID=721813 RepID=A0A540L3F9_MALBA)

HSP 1 Score: 169 bits (427), Expect = 1.680e-49
Identity = 85/150 (56.67%), Postives = 113/150 (75.33%), Query Frame = 1
Query:    1 WGV--AWKRSLFIKTQDTPNKDALKFIPTEQKVMGEGSHEFNNATQAFCSPLAKTLFRVEGVSSVFFGPDFISVNKAEDGDWDMMKPFVFSAIMEHYASGQPLFTEEQQAT--DTAIQDDDDEVVVQIKEMLEARVRPAVQDDGGDIEYK 438
            WG+    KRS+FI+TQ TPN  +L F P +  VM  GS +F NA  A  SPLAK L+ ++GV+ VF+G DF++V K+ED  WD++KP +F+AIM+ Y+SGQPLF +E+ A+  DTAIQ+DD E+V  IKE+LE R+RPAVQDDGGDIEY+
Sbjct:   66 WGILGGQKRSMFIQTQSTPNPASLMFYPGKP-VMEVGSADFPNARSAMNSPLAKALYGIDGVTRVFYGSDFVTVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFVDEKAASAMDTAIQEDDSEIVAMIKELLETRIRPAVQDDGGDIEYR 214          
BLAST of mRNA_M-pyrifera_M_contig120359.4194.1 vs. uniprot
Match: A0A7M7GC57_NASVI (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial n=1 Tax=Nasonia vitripennis TaxID=7425 RepID=A0A7M7GC57_NASVI)

HSP 1 Score: 168 bits (426), Expect = 2.440e-49
Identity = 83/142 (58.45%), Postives = 113/142 (79.58%), Query Frame = 1
Query:   16 KRSLFIKTQDTPNKDALKFIPTEQKVMGEG-SHEFNNATQAFCSPLAKTLFRVEGVSSVFFGPDFISVNKA-EDGDWDMMKPFVFSAIMEHYASGQPLFTEEQQATDTAIQDDDDEVVVQIKEMLEARVRPAVQDDGGDIEY 435
            KRS+FI+TQDTPN ++LKFIP  + V+G+G + +F +AT AFCSPLAK LFR+EGV SVFFG DFI++ K  ED +W ++KP +F+ IM+ +ASG P+FTE Q ++DT I +DDDE+V  IKE+L+ R+RP VQ+DGGDI +
Sbjct:   64 KRSMFIQTQDTPNPNSLKFIPGVE-VLGKGQTKDFPSATDAFCSPLAKMLFRIEGVKSVFFGSDFITITKIDEDVEWKLIKPEIFATIMDFFASGLPIFTEAQSSSDTVINEDDDEIVQMIKELLDTRIRPTVQEDGGDIVF 204          
BLAST of mRNA_M-pyrifera_M_contig120359.4194.1 vs. uniprot
Match: UPI0007679954 (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial-like n=1 Tax=Dufourea novaeangliae TaxID=178035 RepID=UPI0007679954)

HSP 1 Score: 168 bits (425), Expect = 3.460e-49
Identity = 81/141 (57.45%), Postives = 107/141 (75.89%), Query Frame = 1
Query:   16 KRSLFIKTQDTPNKDALKFIPTEQKVMGEGSHEFNNATQAFCSPLAKTLFRVEGVSSVFFGPDFISVNKA-EDGDWDMMKPFVFSAIMEHYASGQPLFTEEQQATDTAIQDDDDEVVVQIKEMLEARVRPAVQDDGGDIEY 435
            KR +FI+TQDTPN ++LKF+P    +    + +F NAT+A+CSPLAK LFRVEGV SVFFGPDFI++ K  ED +W ++KP VF+ IM+ +ASG P+  E+Q A DT I DDDDE+V  IKE+L+ R+RP VQ+DGGDI +
Sbjct:   63 KRDMFIQTQDTPNPNSLKFLPGVNVLQQGQTKDFPNATEAYCSPLAKMLFRVEGVKSVFFGPDFITITKIDEDVEWKLLKPEVFAVIMDFFASGLPVLNEDQPAADTQITDDDDEIVQMIKELLDTRIRPTVQEDGGDIVF 203          
BLAST of mRNA_M-pyrifera_M_contig120359.4194.1 vs. uniprot
Match: A0A7S4MMR3_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MMR3_9EUKA)

HSP 1 Score: 166 bits (421), Expect = 3.770e-49
Identity = 83/141 (58.87%), Postives = 110/141 (78.01%), Query Frame = 1
Query:   13 WKRSLFIKTQDTPNKDALKFIPTEQKVMGEGSHEFNNATQAFCSPLAKTLFRVEGVSSVFFGPDFISVNKAEDGDWDMMKPFVFSAIMEHYASGQPLFTEEQQATDTAIQDDDDEVVVQIKEMLEARVRPAVQDDGGDIEY 435
            W+RS+FI+TQDTPN+++LKF+P E  V+ EG  EF +  +A  SPLA  LF++EGV++VFFGPDFI+VNK ED  W+++K  VF+ IME YASG+P+   E   TDT+IQ+DDDEVV QIKE+++ RVRP VQ DGG+I Y
Sbjct:   22 WRRSMFIQTQDTPNENSLKFMPGEV-VLKEGVAEFKSYREAQQSPLANELFKIEGVTNVFFGPDFITVNKEEDTAWNVIKSDVFTKIMEFYASGEPIINLEVPVTDTSIQEDDDEVVQQIKEIIDTRVRPYVQSDGGEITY 161          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120359.4194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00073D4F421.700e-5057.45NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
A0A7S4IJI1_9EUKA2.440e-5058.74Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A834PFJ4_VESPE6.440e-5056.03NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
A0A7L4FRT6_9COLU6.960e-5057.45NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
A0A7K9E776_BARMA1.340e-4956.74NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
A0A7K6TB15_CALNI1.410e-4956.74NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
A0A540L3F9_MALBA1.680e-4956.67Nfu_N domain-containing protein n=4 Tax=Maleae Tax... [more]
A0A7M7GC57_NASVI2.440e-4958.45NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
UPI00076799543.460e-4957.45NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
A0A7S4MMR3_9EUKA3.770e-4958.87Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120359contigM-pyrifera_M_contig120359:73..522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score169.9
Seed ortholog evalue9.3e-40
Seed eggNOG ortholog3750.XP_008337535.1
Preferred nameNFU4
KEGG koko:K22074
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0005198,GO:0005488,GO:0005507,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0008144,GO:0017076,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0097159,GO:0097367,GO:1901265,GO:1901363
EggNOG free text desc.NifU-like protein 4
EggNOG OGs37IUM@33090,3G9KI@35493,4JS5S@91835,COG0694@1,KOG2358@2759
COG Functional cat.O
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Exons1
Model size450
Cds size450
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815722.8469906-CDS-M-pyrifera_M_contig120359:72..5221622815722.8469906-CDS-M-pyrifera_M_contig120359:72..522Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120359 73..522 +
1692277538.6128073-CDS-M-pyrifera_M_contig120359:72..5221692277538.6128073-CDS-M-pyrifera_M_contig120359:72..522Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120359 73..522 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120359.4194.1prot_M-pyrifera_M_contig120359.4194.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120359 73..522 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120359.4194.1

>prot_M-pyrifera_M_contig120359.4194.1 ID=prot_M-pyrifera_M_contig120359.4194.1|Name=mRNA_M-pyrifera_M_contig120359.4194.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=150bp
WGVAWKRSLFIKTQDTPNKDALKFIPTEQKVMGEGSHEFNNATQAFCSPL
AKTLFRVEGVSSVFFGPDFISVNKAEDGDWDMMKPFVFSAIMEHYASGQP
LFTEEQQATDTAIQDDDDEVVVQIKEMLEARVRPAVQDDGGDIEYKVCP*
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mRNA from alignment at M-pyrifera_M_contig120359:73..522+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120359.4194.1 ID=mRNA_M-pyrifera_M_contig120359.4194.1|Name=mRNA_M-pyrifera_M_contig120359.4194.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=450bp|location=Sequence derived from alignment at M-pyrifera_M_contig120359:73..522+ (Macrocystis pyrifera P11B4 male)
TGGGGAGTGGCATGGAAGCGGTCGCTCTTCATTAAGACGCAGGACACACC CAACAAGGATGCGCTGAAGTTCATTCCCACGGAGCAGAAGGTCATGGGCG AGGGATCGCATGAGTTCAACAACGCTACGCAGGCTTTCTGCTCTCCCTTG GCAAAGACCCTCTTCAGGGTCGAAGGCGTGAGCTCCGTCTTCTTTGGGCC CGACTTCATCTCTGTCAACAAGGCAGAAGACGGCGACTGGGACATGATGA AACCCTTTGTCTTCTCCGCCATCATGGAGCATTACGCCTCTGGCCAGCCG CTCTTCACTGAAGAGCAGCAGGCAACCGACACCGCCATCCAGGACGATGA CGATGAGGTGGTCGTCCAGATCAAGGAGATGCTTGAGGCTCGTGTCCGCC CTGCCGTGCAGGACGACGGCGGCGACATCGAGTACAAGGTTTGTCCTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120359:73..522+

>mRNA_M-pyrifera_M_contig120359.4194.1 ID=mRNA_M-pyrifera_M_contig120359.4194.1|Name=mRNA_M-pyrifera_M_contig120359.4194.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=900bp|location=Sequence derived from alignment at M-pyrifera_M_contig120359:73..522+ (Macrocystis pyrifera P11B4 male)
TGGGGAGTGGCATGGAAGCGGTCGCTCTTCATTAAGACGCAGGACACACC
CAACAAGGATGCGCTGAAGTTCATTCCCACGGAGCAGAAGGTCATGGGCG
AGGGATCGCATGAGTTCAACAACGCTACGCAGGCTTTCTGCTCTCCCTTG
GCAAAGACCCTCTTCAGGGTCGAAGGCGTGAGCTCCGTCTTCTTTGGGCC
CGACTTCATCTCTGTCAACAAGGCAGAAGACGGCGACTGGGACATGATGA
AACCCTTTGTCTTCTCCGCCATCATGGAGCATTACGCCTCTGGCCAGCCG
CTCTTCACTGAAGAGCAGCAGGCAACCGACACCGCCATCCAGGACGATGA
CGATGAGGTGGTCGTCCAGATCAAGGAGATGCTTGAGGCTCGTGTCCGCC
CTGCCGTGCAGGACGACGGCGGCGACATCGAGTACAAGGTTTGTCCTTGA
TGGGGAGTGGCATGGAAGCGGTCGCTCTTCATTAAGACGCAGGACACACC
CAACAAGGATGCGCTGAAGTTCATTCCCACGGAGCAGAAGGTCATGGGCG
AGGGATCGCATGAGTTCAACAACGCTACGCAGGCTTTCTGCTCTCCCTTG
GCAAAGACCCTCTTCAGGGTCGAAGGCGTGAGCTCCGTCTTCTTTGGGCC
CGACTTCATCTCTGTCAACAAGGCAGAAGACGGCGACTGGGACATGATGA
AACCCTTTGTCTTCTCCGCCATCATGGAGCATTACGCCTCTGGCCAGCCG
CTCTTCACTGAAGAGCAGCAGGCAACCGACACCGCCATCCAGGACGATGA
CGATGAGGTGGTCGTCCAGATCAAGGAGATGCTTGAGGCTCGTGTCCGCC
CTGCCGTGCAGGACGACGGCGGCGACATCGAGTACAAGGTTTGTCCTTGA
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