mRNA_M-pyrifera_M_contig120349.4190.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120349.4190.1
Unique NamemRNA_M-pyrifera_M_contig120349.4190.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig120349.4190.1 vs. uniprot
Match: A0A1X7SHL1_AMPQE (Uncharacterized protein n=2 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7SHL1_AMPQE)

HSP 1 Score: 107 bits (266), Expect = 2.800e-27
Identity = 49/100 (49.00%), Postives = 70/100 (70.00%), Query Frame = 1 
Query:    1 ISFLVNGEEHRVAELDPRTTLNDYLRSSFGLSGTKKMCGEGGCGACTVMLSWQDS-TGATVNIPINSCLAPLASVTGKSVTTVEGIGSWKEGYSAIQQQL 297
            +SF +NG    + +  P T+LN+++RS +GLSGTK+MCGEGGCG C V  +  D  +   V + INSCL PL S+ G S+TTVEGIGS K+G+  +Q+++
Sbjct:   10 VSFTLNGRRVELTDPSPNTSLNEWIRSQYGLSGTKRMCGEGGCGCCVVSATKTDLLSNEQVTLAINSCLCPLYSINGWSITTVEGIGSSKKGFHPVQKRI 109
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BLAST of mRNA_M-pyrifera_M_contig120349.4190.1 vs. uniprot
Match: UPI001EB05BB8 (xanthine dehydrogenase/oxidase-like n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EB05BB8)

HSP 1 Score: 108 bits (271), Expect = 3.200e-27
Identity = 53/99 (53.54%), Postives = 70/99 (70.71%), Query Frame = 1 
Query:    7 FLVNGEEHRV-AELDPRTTLNDYLRSSFGLSGTKKMCGEGGCGACTVMLSWQD-STGATVNIPINSCLAPLASVTGKSVTTVEGIGSWKEGYSAIQQQL 297
            F +NG++H V  E DP T+LNDY+R + GL GTK MC EGGCG C VM++ +D ++G   +  INSCL PL SV G  +TTVEGIG+ K+GY  IQ ++
Sbjct:   20 FFINGKQHTVHGEYDPTTSLNDYIRDTAGLRGTKVMCREGGCGCCAVMVTQKDVASGQDSSFSINSCLCPLYSVDGWQITTVEGIGNRKDGYHPIQDRI 118
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BLAST of mRNA_M-pyrifera_M_contig120349.4190.1 vs. uniprot
Match: A0A6P4YRY0_BRABE (indole-3-acetaldehyde oxidase-like n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4YRY0_BRABE)

HSP 1 Score: 107 bits (268), Expect = 4.310e-26
Identity = 53/100 (53.00%), Postives = 68/100 (68.00%), Query Frame = 1 
Query:    1 ISFLVNGEEHRVAELDPRTTLNDYLRSSFGLSGTKKMCGEGGCGACTVMLSWQDST-GATVNIPINSCLAPLASVTGKSVTTVEGIGSWKEGYSAIQQQL 297
            ++F VNG+ H V   DP  TLN++LRS  GL+GTK MC EGGCG C VM++  D T G   +  +NSCL PL SV G S+TTVEG+G  K G+  IQ++L
Sbjct:   13 LTFWVNGKRHVVLNPDPGVTLNEWLRSQRGLTGTKVMCREGGCGCCVVMVTHPDPTNGGACSYTLNSCLCPLCSVDGWSITTVEGLGGQKAGFHPIQRRL 112
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BLAST of mRNA_M-pyrifera_M_contig120349.4190.1 vs. uniprot
Match: A0A6P4ZDJ6_BRABE (xanthine dehydrogenase/oxidase-like n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4ZDJ6_BRABE)

HSP 1 Score: 109 bits (272), Expect = 1.100e-25
Identity = 54/100 (54.00%), Postives = 69/100 (69.00%), Query Frame = 1 
Query:    1 ISFLVNGEEHRVAELDPRTTLNDYLRSSFGLSGTKKMCGEGGCGACTVMLSWQDST-GATVNIPINSCLAPLASVTGKSVTTVEGIGSWKEGYSAIQQQL 297
            + F VNG  H V+  DP  TLN +LRS  GL+GTK MCGEGGCG C VM++  D T G T++  +NSCL PL SV G ++TTVEG+G  K G+  IQ++L
Sbjct:   15 LRFWVNGRYHVVSNPDPGMTLNKWLRSQRGLTGTKVMCGEGGCGCCVVMVTHPDLTNGGTLSYTLNSCLCPLCSVDGWTITTVEGLGGQKAGFHPIQRRL 114
[Close]
BLAST of mRNA_M-pyrifera_M_contig120349.4190.1 vs. uniprot
Match: UPI001EB0686E (indole-3-acetaldehyde oxidase-like n=2 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EB0686E)

HSP 1 Score: 108 bits (271), Expect = 1.500e-25
Identity = 53/99 (53.54%), Postives = 70/99 (70.71%), Query Frame = 1 
Query:    7 FLVNGEEHRV-AELDPRTTLNDYLRSSFGLSGTKKMCGEGGCGACTVMLSWQD-STGATVNIPINSCLAPLASVTGKSVTTVEGIGSWKEGYSAIQQQL 297
            F +NG++H V  E DP T+LNDY+R + GL GTK MC EGGCG C VM++ +D ++G   +  INSCL PL SV G  +TTVEGIG+ K+GY  IQ ++
Sbjct:   20 FFINGKQHTVHGEYDPTTSLNDYIRDTAGLRGTKVMCREGGCGCCAVMVTQKDVASGQDSSFSINSCLCPLYSVDGWQITTVEGIGNRKDGYHPIQDRI 118
[Close]
BLAST of mRNA_M-pyrifera_M_contig120349.4190.1 vs. uniprot
Match: UPI0016045DFA (xanthine dehydrogenase-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI0016045DFA)

HSP 1 Score: 99.8 bits (247), Expect = 2.310e-25
Identity = 47/85 (55.29%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:    1 ISFLVNGEEHRVAELDPRTTLNDYLRSSFGLSGTKKMCGEGGCGACTVMLSWQD-STGATVNIPINSCLAPLASVTGKSVTTVEG 252
            ++F VNG +H V   DP  TLN++LRS  GL+GTK MCGEGGCG C VM++  D + G T++  +NSCL PL SV G ++TTVEG
Sbjct:    9 LTFWVNGTQHEVQNPDPSMTLNEWLRSQRGLTGTKVMCGEGGCGCCVVMVTHPDPANGGTLSYTVNSCLCPLCSVEGWTITTVEG 93
[Close]
BLAST of mRNA_M-pyrifera_M_contig120349.4190.1 vs. uniprot
Match: A0A8J9Z600_BRALA (XDH protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9Z600_BRALA)

HSP 1 Score: 108 bits (269), Expect = 2.800e-25
Identity = 53/100 (53.00%), Postives = 70/100 (70.00%), Query Frame = 1 
Query:    1 ISFLVNGEEHRVAELDPRTTLNDYLRSSFGLSGTKKMCGEGGCGACTVMLSWQDST-GATVNIPINSCLAPLASVTGKSVTTVEGIGSWKEGYSAIQQQL 297
            ++F VNG  H V   DP  TLN++LRS  GL+GTK MCGEGGCG C VM++  D+T G  ++  +NSCL PL SV G ++TTVEG+G  K G+  IQ++L
Sbjct:   12 LTFWVNGRCHVVPNPDPLMTLNEWLRSQRGLTGTKVMCGEGGCGCCVVMVTHPDTTNGGKLSYTVNSCLCPLCSVDGWTITTVEGLGVQKAGFHPIQRRL 111
[Close]
BLAST of mRNA_M-pyrifera_M_contig120349.4190.1 vs. uniprot
Match: UPI001EE5DEAD (probable aldehyde oxidase 2 n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE5DEAD)

HSP 1 Score: 107 bits (267), Expect = 5.220e-25
Identity = 53/101 (52.48%), Postives = 67/101 (66.34%), Query Frame = 1 
Query:    1 ISFLVNGEEHRV-AELDPRTTLNDYLRSSFGLSGTKKMCGEGGCGACTVMLSWQDST-GATVNIPINSCLAPLASVTGKSVTTVEGIGSWKEGYSAIQQQL 297
            + F +NG++H V  E DP T+LNDY+R + GL GTK MC EGGCG C V ++  D T G   +  INSCL PL S  G  +TTVEGIGS K+GY  IQ ++
Sbjct:   18 VRFFINGKQHTVHGEYDPTTSLNDYIRDTAGLRGTKVMCREGGCGCCAVTVTLNDVTSGQNSSFSINSCLCPLYSADGWQITTVEGIGSRKDGYHPIQDRI 118
[Close]
BLAST of mRNA_M-pyrifera_M_contig120349.4190.1 vs. uniprot
Match: UPI001600423B (xanthine dehydrogenase-like isoform X1 n=14 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI001600423B)

HSP 1 Score: 107 bits (267), Expect = 5.220e-25
Identity = 53/100 (53.00%), Postives = 68/100 (68.00%), Query Frame = 1 
Query:    1 ISFLVNGEEHRVAELDPRTTLNDYLRSSFGLSGTKKMCGEGGCGACTVMLSWQDST-GATVNIPINSCLAPLASVTGKSVTTVEGIGSWKEGYSAIQQQL 297
            ++F VNG+ H V   DP  TLN++LRS  GL+GTK MC EGGCG C VM++  D T G   +  +NSCL PL SV G S+TTVEG+G  K G+  IQ++L
Sbjct:   43 LTFWVNGKRHVVQNPDPAMTLNEWLRSQRGLTGTKVMCREGGCGCCVVMVTHSDLTNGGACSYSLNSCLCPLCSVDGWSITTVEGLGGQKGGFHPIQRRL 142
[Close]
BLAST of mRNA_M-pyrifera_M_contig120349.4190.1 vs. uniprot
Match: A0A2P6N9W6_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N9W6_9EUKA)

HSP 1 Score: 106 bits (265), Expect = 9.760e-25
Identity = 50/100 (50.00%), Postives = 71/100 (71.00%), Query Frame = 1 
Query:    1 ISFLVNGEEHRVAELDPRTTLNDYLRSSFGLSGTKKMCGEGGCGACTVMLSWQD-STGATVNIPINSCLAPLASVTGKSVTTVEGIGSWKEGYSAIQQQL 297
            + F +NG+ H + + DP TTLN+Y+RS  GL+GTKK CGEGGCG CTV++  +D STG TV   INSCL P+ ++ G  V T EG+G  ++G+  IQ+++
Sbjct:   96 VKFTINGQPHTLTQPDPYTTLNEYIRS-VGLTGTKKSCGEGGCGVCTVVVRKKDASTGQTVTASINSCLKPVCTLNGYDVLTTEGLGDKRKGHHDIQKKM 194
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120349.4190.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1X7SHL1_AMPQE2.800e-2749.00Uncharacterized protein n=2 Tax=Amphimedon queensl... [more]
UPI001EB05BB83.200e-2753.54xanthine dehydrogenase/oxidase-like n=1 Tax=Haliot... [more]
A0A6P4YRY0_BRABE4.310e-2653.00indole-3-acetaldehyde oxidase-like n=1 Tax=Branchi... [more]
A0A6P4ZDJ6_BRABE1.100e-2554.00xanthine dehydrogenase/oxidase-like n=1 Tax=Branch... [more]
UPI001EB0686E1.500e-2553.54indole-3-acetaldehyde oxidase-like n=2 Tax=Halioti... [more]
UPI0016045DFA2.310e-2555.29xanthine dehydrogenase-like n=1 Tax=Branchiostoma ... [more]
A0A8J9Z600_BRALA2.800e-2553.00XDH protein n=1 Tax=Branchiostoma lanceolatum TaxI... [more]
UPI001EE5DEAD5.220e-2552.48probable aldehyde oxidase 2 n=1 Tax=Haliotis rubra... [more]
UPI001600423B5.220e-2553.00xanthine dehydrogenase-like isoform X1 n=14 Tax=Br... [more]
A0A2P6N9W6_9EUKA9.760e-2550.00Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120349contigM-pyrifera_M_contig120349:242..538 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.1
Seed ortholog evalue4.9e-21
Seed eggNOG ortholog400682.PAC_15699560
KEGG rclassRC00143,RC02017,RC02199
KEGG koko:K00106
KEGG ReactionR01768,R01769,R02103,R02107,R07942,R07977,R07978,R07979,R08235
KEGG Pathwayko00230,ko00232,ko00983,ko01100,ko01110,ko01120,ko04146,map00230,map00232,map00983,map01100,map01110,map01120,map04146
KEGG ModuleM00546
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004854,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006144,GO:0006145,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009112,GO:0009115,GO:0009987,GO:0016491,GO:0016725,GO:0016726,GO:0016903,GO:0019439,GO:0034641,GO:0036094,GO:0043167,GO:0043168,GO:0043546,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046110,GO:0046113,GO:0046483,GO:0046700,GO:0048037,GO:0050660,GO:0050662,GO:0051536,GO:0051537,GO:0051540,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:0072523,GO:0097159,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.Xanthine dehydrogenase
EggNOG OGsCOG4631@1,KOG0430@2759
Ec32 ortholog description2Fe-2S ferredoxin-type domain
Ec32 orthologEc-00_002570.1
EC1.17.1.4,1.17.3.2
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Exons1
Model size297
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815722.616684-CDS-M-pyrifera_M_contig120349:241..5381622815722.616684-CDS-M-pyrifera_M_contig120349:241..538Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120349 242..538 +
1692277538.471715-CDS-M-pyrifera_M_contig120349:241..5381692277538.471715-CDS-M-pyrifera_M_contig120349:241..538Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120349 242..538 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120349.4190.1prot_M-pyrifera_M_contig120349.4190.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120349 242..538 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120349.4190.1

>prot_M-pyrifera_M_contig120349.4190.1 ID=prot_M-pyrifera_M_contig120349.4190.1|Name=mRNA_M-pyrifera_M_contig120349.4190.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=99bp
ISFLVNGEEHRVAELDPRTTLNDYLRSSFGLSGTKKMCGEGGCGACTVML
SWQDSTGATVNIPINSCLAPLASVTGKSVTTVEGIGSWKEGYSAIQQQL
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mRNA from alignment at M-pyrifera_M_contig120349:242..538+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120349.4190.1 ID=mRNA_M-pyrifera_M_contig120349.4190.1|Name=mRNA_M-pyrifera_M_contig120349.4190.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=297bp|location=Sequence derived from alignment at M-pyrifera_M_contig120349:242..538+ (Macrocystis pyrifera P11B4 male)
ATCTCGTTCCTTGTGAATGGAGAAGAGCACAGGGTGGCAGAGTTAGACCC
TCGTACGACTTTGAACGACTACCTCCGCTCTAGCTTTGGCTTGAGCGGCA
CCAAGAAGATGTGTGGAGAGGGTGGCTGTGGAGCGTGCACGGTGATGCTG
TCCTGGCAGGATTCCACTGGTGCAACTGTCAACATTCCCATCAACTCCTG
TCTTGCTCCTTTGGCCTCAGTCACAGGAAAGAGCGTCACCACAGTGGAGG
GTATTGGCTCCTGGAAGGAGGGCTACAGCGCGATCCAGCAGCAGCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120349:242..538+

>mRNA_M-pyrifera_M_contig120349.4190.1 ID=mRNA_M-pyrifera_M_contig120349.4190.1|Name=mRNA_M-pyrifera_M_contig120349.4190.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=594bp|location=Sequence derived from alignment at M-pyrifera_M_contig120349:242..538+ (Macrocystis pyrifera P11B4 male)
ATCTCGTTCCTTGTGAATGGAGAAGAGCACAGGGTGGCAGAGTTAGACCC
TCGTACGACTTTGAACGACTACCTCCGCTCTAGCTTTGGCTTGAGCGGCA
CCAAGAAGATGTGTGGAGAGGGTGGCTGTGGAGCGTGCACGGTGATGCTG
TCCTGGCAGGATTCCACTGGTGCAACTGTCAACATTCCCATCAACTCCTG
TCTTGCTCCTTTGGCCTCAGTCACAGGAAAGAGCGTCACCACAGTGGAGG
GTATTGGCTCCTGGAAGGAGGGCTACAGCGCGATCCAGCAGCAGCTGATC
TCGTTCCTTGTGAATGGAGAAGAGCACAGGGTGGCAGAGTTAGACCCTCG
TACGACTTTGAACGACTACCTCCGCTCTAGCTTTGGCTTGAGCGGCACCA
AGAAGATGTGTGGAGAGGGTGGCTGTGGAGCGTGCACGGTGATGCTGTCC
TGGCAGGATTCCACTGGTGCAACTGTCAACATTCCCATCAACTCCTGTCT
TGCTCCTTTGGCCTCAGTCACAGGAAAGAGCGTCACCACAGTGGAGGGTA
TTGGCTCCTGGAAGGAGGGCTACAGCGCGATCCAGCAGCAGCTG
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