mRNA_M-pyrifera_M_contig120348.4189.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120348.4189.1
Unique NamemRNA_M-pyrifera_M_contig120348.4189.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig120348.4189.1 vs. uniprot
Match: UPI00190497B2 (carbohydrate binding domain-containing protein n=1 Tax=Pelagicoccus mobilis TaxID=415221 RepID=UPI00190497B2)

HSP 1 Score: 67.8 bits (164), Expect = 3.510e-11
Identity = 29/62 (46.77%), Postives = 40/62 (64.52%), Query Frame = 1
Query:   46 GTWSHLAVTWDGAWVRLFVDGAEVDTVAASGTLATDVLVPLVVGNLASADRGFDGQVDQVHV 231
            G W+HLA ++DG W+RL+V+GA    +A SG L  DV VP  +GN     +GFDG +D V +
Sbjct: 1873 GEWTHLAASYDGNWIRLYVNGAFDSAIAMSGDLVQDVSVPAAIGNQPHGGKGFDGLIDDVQI 1934          
BLAST of mRNA_M-pyrifera_M_contig120348.4189.1 vs. uniprot
Match: A0A518ERP4_9BACT (Quinoprotein glucose dehydrogenase B n=1 Tax=Planctomycetes bacterium Poly30 TaxID=2528018 RepID=A0A518ERP4_9BACT)

HSP 1 Score: 63.2 bits (152), Expect = 1.430e-9
Identity = 26/60 (43.33%), Postives = 43/60 (71.67%), Query Frame = 1
Query:   52 WSHLAVTWDGAWVRLFVDGAEVDTVAASGTLATDVLVPLVVGNLASADRGFDGQVDQVHV 231
            W+ +A T+DGA +R+++DG EV ++A SG ++T   VP  +GN  ++DR FDG +D+V +
Sbjct:  725 WTFVAATYDGARMRMYLDGTEVGSMAKSGAISTSPSVPAAIGNQPASDRPFDGLIDEVRI 784          
BLAST of mRNA_M-pyrifera_M_contig120348.4189.1 vs. uniprot
Match: A0A2V7J8R7_9BACT (LamGL domain-containing protein (Fragment) n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A2V7J8R7_9BACT)

HSP 1 Score: 61.6 bits (148), Expect = 4.970e-9
Identity = 32/70 (45.71%), Postives = 49/70 (70.00%), Query Frame = 1
Query:   43 IGTWSHLAVTWDGAWVRLFVDGAEVDTVAASGTLATDVLVPLVVGNLASADRGFDGQVDQVHVAHVARSA 252
            + TW+HLAVT+DGA +RLFV+G +V+T AA+G+L T    PL +GN    +  F G++D V + + A++A
Sbjct:  102 VNTWTHLAVTYDGATLRLFVNGTQVNTTAATGSLQTGT-TPLRIGNNTYGE-SFQGRIDDVRIYNRAQTA 169          
BLAST of mRNA_M-pyrifera_M_contig120348.4189.1 vs. uniprot
Match: A0A366LSU3_9ACTN (Fibronectin type-III domain-containing protein n=2 Tax=Spongiactinospora TaxID=2871671 RepID=A0A366LSU3_9ACTN)

HSP 1 Score: 61.6 bits (148), Expect = 5.120e-9
Identity = 38/86 (44.19%), Postives = 53/86 (61.63%), Query Frame = 1
Query:   13 PVEVRGGSTT-IGTWSHLAVTWDGAWVRLFVDGAEVDTVAASGTLATDVLVPLVVGNLASADRGFDGQVDQVHVAHVARSAEWVAT 267
            P  V G S   +GTWSH+A+T+DGA +RLFV+GA+    A SG L +D   PL +G  A+    F G +D+V V + A+SA  + T
Sbjct:  934 PTTVNGASPLPVGTWSHVALTYDGAALRLFVNGAQAGQTALSGGLHSDGS-PLRIGGNAAWGEFFGGLIDEVRVYNRAQSATEIQT 1018          
BLAST of mRNA_M-pyrifera_M_contig120348.4189.1 vs. uniprot
Match: UPI00178674CC (DUF1349 domain-containing protein n=1 Tax=Pelagicoccus enzymogenes TaxID=2773457 RepID=UPI00178674CC)

HSP 1 Score: 60.8 bits (146), Expect = 9.700e-9
Identity = 31/88 (35.23%), Postives = 51/88 (57.95%), Query Frame = 1
Query:    7 AGPVEVRGGSTTI--GTWSHLAVTWDGAWVRLFVDGAEVDTVAASGTLATDVLVPLVVGNLASADRGFDGQVDQVHVAHVARSAEWVA 264
            AG      G+T +  G W H+A+ +DG+++RL+++G     +   G +A +  VP+ +GN     RGFDG +D+V +  VA  AE +A
Sbjct:  951 AGATRTLLGATDLVAGEWMHVAMVYDGSFIRLYLNGVLDSELEHGGEIAQNANVPVAIGNQPQGGRGFDGLIDEVKIYSVAYDAEGIA 1038          
BLAST of mRNA_M-pyrifera_M_contig120348.4189.1 vs. uniprot
Match: UPI00200D3436 (LamG domain-containing protein n=1 Tax=Halocatena sp. DFN5 TaxID=2934937 RepID=UPI00200D3436)

HSP 1 Score: 60.5 bits (145), Expect = 1.240e-8
Identity = 29/73 (39.73%), Postives = 52/73 (71.23%), Query Frame = 1
Query:   19 EVRGGSTTIGTWSHLAVTWDGAWVRLFVDGAEVDTVAASGTLATDVLVPLVVGNL-ASADRGF-DGQVDQVHV 231
            +V GGS T G+W HLAVT+DG++++L+VDG EVD+VA SG+  ++ ++ +      A+ + G+  G++D++ +
Sbjct:  149 KVTGGSPTTGSWIHLAVTYDGSFLKLYVDGTEVDSVATSGSFDSENVIQVGTDEANANDNHGYWKGRIDELRI 221          
BLAST of mRNA_M-pyrifera_M_contig120348.4189.1 vs. uniprot
Match: UPI0019D40AD5 (PKD domain-containing protein n=1 Tax=Parahaliea mediterranea TaxID=651086 RepID=UPI0019D40AD5)

HSP 1 Score: 60.1 bits (144), Expect = 1.750e-8
Identity = 33/84 (39.29%), Postives = 50/84 (59.52%), Query Frame = 1
Query:   10 GPVEVRGGSTTI---------GTWSHLAVTWDGAWVRLFVDGAEVDTVAASGTLATDVLVPLVVGNLASAD-RGFDGQVDQVHV 231
            G V V G +TT+         G W H A+T++GA +RL++DG  V + A SGT+ TD  +P+ +G+    + R FDG +D VH+
Sbjct:  223 GRVRVGGRTTTLIASSGDIGAGNWHHAALTYNGASLRLYLDGQVVGSTALSGTIDTDASMPVAIGSQPLGNTRWFDGLIDGVHI 306          
BLAST of mRNA_M-pyrifera_M_contig120348.4189.1 vs. uniprot
Match: A0A0B7IYV6_9PROT (MotA/TolQ/ExbB proton channel n=1 Tax=Candidatus Methylopumilus turicensis TaxID=1581680 RepID=A0A0B7IYV6_9PROT)

HSP 1 Score: 59.7 bits (143), Expect = 2.310e-8
Identity = 33/87 (37.93%), Postives = 48/87 (55.17%), Query Frame = 1
Query:    1 LGAGPVEVRGGSTTIGTWSHLAVTWDGAWVRLFVDGAEVDTVAASGTLATDVLVPLVVGNLASADRGFDGQVDQVHVAHVARSAEWV 261
            L AG  +V GG     TW H+A+T DG    L+++G  V T      LA D    + VG+       F G++D++ +A+VARSAEW+
Sbjct:  229 LNAGAAKVAGGELKAATWQHVALTVDGTKANLYINGISVAT---GDVLAADASSNIKVGD------AFTGEIDEMQMANVARSAEWL 306          
BLAST of mRNA_M-pyrifera_M_contig120348.4189.1 vs. uniprot
Match: A0A7Y6CTY7_9ACTN (Fibronectin type-III domain-containing protein n=1 Tax=Thermoleophilia bacterium TaxID=2026888 RepID=A0A7Y6CTY7_9ACTN)

HSP 1 Score: 59.3 bits (142), Expect = 3.280e-8
Identity = 28/63 (44.44%), Postives = 44/63 (69.84%), Query Frame = 1
Query:   43 IGTWSHLAVTWDGAWVRLFVDGAEVDTVAASGTLATDVLVPLVVGNLASADRGFDGQVDQVHV 231
            +G+WSH+AVT+DGA +RL+V+GA+   +AA+G+LAT    P  +G   S    F+G +D+V +
Sbjct:  350 VGSWSHVAVTYDGATLRLYVNGAQASQLAAAGSLATSTS-PFHIGGNGSWGEWFNGSIDEVRL 411          
BLAST of mRNA_M-pyrifera_M_contig120348.4189.1 vs. uniprot
Match: A0A524CK69_9ARCH (LamG domain-containing protein (Fragment) n=1 Tax=Candidatus Lokiarchaeota archaeon TaxID=2053489 RepID=A0A524CK69_9ARCH)

HSP 1 Score: 59.3 bits (142), Expect = 3.330e-8
Identity = 29/83 (34.94%), Postives = 45/83 (54.22%), Query Frame = 1
Query:   31 GSTTIGTWSHLAVTWDGAWVRLFVDGAEVDTVAASGTLATDVLVPLVVGNLASADRGFDGQVDQVHVAHVARSAEWVATAHAN 279
            G   + TW H+A+TWDG  V LF+DG EV      G+      V  ++G++A+  R FDG + +V +   A   +W+ T + N
Sbjct:  288 GGIGVNTWHHIALTWDGYNVELFIDGNEVAHTTNQGSNFEYSSVDAIIGDIANKLRPFDGMISEVRILDEALHDDWIKTEYRN 370          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120348.4189.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00190497B23.510e-1146.77carbohydrate binding domain-containing protein n=1... [more]
A0A518ERP4_9BACT1.430e-943.33Quinoprotein glucose dehydrogenase B n=1 Tax=Planc... [more]
A0A2V7J8R7_9BACT4.970e-945.71LamGL domain-containing protein (Fragment) n=1 Tax... [more]
A0A366LSU3_9ACTN5.120e-944.19Fibronectin type-III domain-containing protein n=2... [more]
UPI00178674CC9.700e-935.23DUF1349 domain-containing protein n=1 Tax=Pelagico... [more]
UPI00200D34361.240e-839.73LamG domain-containing protein n=1 Tax=Halocatena ... [more]
UPI0019D40AD51.750e-839.29PKD domain-containing protein n=1 Tax=Parahaliea m... [more]
A0A0B7IYV6_9PROT2.310e-837.93MotA/TolQ/ExbB proton channel n=1 Tax=Candidatus M... [more]
A0A7Y6CTY7_9ACTN3.280e-844.44Fibronectin type-III domain-containing protein n=1... [more]
A0A524CK69_9ARCH3.330e-834.94LamG domain-containing protein (Fragment) n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120348contigM-pyrifera_M_contig120348:173..451 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArchaea
Seed ortholog score65.1
Seed ortholog evalue2e-08
Seed eggNOG ortholog1210908.HSB1_40380
KEGG rclassRC00005,RC00111,RC00482,RC00731
KEGG koko:K03418,ko:K07151
KEGG ReactionR02509,R04216,R05976
KEGG Pathwayko00510,ko00513,ko00630,ko01100,ko04141,map00510,map00513,map00630,map01100,map04141
KEGG ModuleM00072
Hectar predicted targeting categoryother localisation
EggNOG free text desc.LamG domain protein jellyroll fold domain protein
EggNOG OGs23UNM@183963,2XV0J@28890,arCOG07813@1,arCOG07813@2157
EC2.4.99.18,3.5.1.56
COG Functional cat.G
CAZyGT66
Best tax levelHalobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Exons1
Model size279
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815722.582293-CDS-M-pyrifera_M_contig120348:172..4511622815722.582293-CDS-M-pyrifera_M_contig120348:172..451Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120348 173..451 -
1692277538.4540136-CDS-M-pyrifera_M_contig120348:172..4511692277538.4540136-CDS-M-pyrifera_M_contig120348:172..451Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120348 173..451 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120348.4189.1prot_M-pyrifera_M_contig120348.4189.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120348 173..451 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120348.4189.1

>prot_M-pyrifera_M_contig120348.4189.1 ID=prot_M-pyrifera_M_contig120348.4189.1|Name=mRNA_M-pyrifera_M_contig120348.4189.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=93bp
LGAGPVEVRGGSTTIGTWSHLAVTWDGAWVRLFVDGAEVDTVAASGTLAT
DVLVPLVVGNLASADRGFDGQVDQVHVAHVARSAEWVATAHAN
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mRNA from alignment at M-pyrifera_M_contig120348:173..451-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120348.4189.1 ID=mRNA_M-pyrifera_M_contig120348.4189.1|Name=mRNA_M-pyrifera_M_contig120348.4189.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=279bp|location=Sequence derived from alignment at M-pyrifera_M_contig120348:173..451- (Macrocystis pyrifera P11B4 male)
CTCGGGGCCGGACCGGTCGAAGTGCGCGGCGGCTCGACGACCATCGGGAC CTGGTCGCATCTTGCGGTCACCTGGGACGGCGCTTGGGTGCGGCTATTCG TCGACGGTGCCGAGGTCGACACGGTGGCTGCGTCCGGCACCCTTGCGACC GACGTCTTGGTGCCGCTCGTCGTCGGCAACCTCGCCTCGGCCGACCGAGG ATTCGACGGGCAGGTCGATCAGGTCCACGTCGCTCACGTCGCTCGCTCGG CCGAGTGGGTCGCAACGGCTCACGCCAAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120348:173..451-

>mRNA_M-pyrifera_M_contig120348.4189.1 ID=mRNA_M-pyrifera_M_contig120348.4189.1|Name=mRNA_M-pyrifera_M_contig120348.4189.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig120348:173..451- (Macrocystis pyrifera P11B4 male)
CTCGGGGCCGGACCGGTCGAAGTGCGCGGCGGCTCGACGACCATCGGGAC
CTGGTCGCATCTTGCGGTCACCTGGGACGGCGCTTGGGTGCGGCTATTCG
TCGACGGTGCCGAGGTCGACACGGTGGCTGCGTCCGGCACCCTTGCGACC
GACGTCTTGGTGCCGCTCGTCGTCGGCAACCTCGCCTCGGCCGACCGAGG
ATTCGACGGGCAGGTCGATCAGGTCCACGTCGCTCACGTCGCTCGCTCGG
CCGAGTGGGTCGCAACGGCTCACGCCAACCTCGGGGCCGGACCGGTCGAA
GTGCGCGGCGGCTCGACGACCATCGGGACCTGGTCGCATCTTGCGGTCAC
CTGGGACGGCGCTTGGGTGCGGCTATTCGTCGACGGTGCCGAGGTCGACA
CGGTGGCTGCGTCCGGCACCCTTGCGACCGACGTCTTGGTGCCGCTCGTC
GTCGGCAACCTCGCCTCGGCCGACCGAGGATTCGACGGGCAGGTCGATCA
GGTCCACGTCGCTCACGTCGCTCGCTCGGCCGAGTGGGTCGCAACGGCTC
ACGCCAAC
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