mRNA_M-pyrifera_M_contig120255.4186.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120255.4186.1
Unique NamemRNA_M-pyrifera_M_contig120255.4186.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig120255.4186.1 vs. uniprot
Match: A0A2D5H2I2_9PLAN (HTH_17 domain-containing protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A2D5H2I2_9PLAN)

HSP 1 Score: 142 bits (359), Expect = 9.890e-43
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = 1 
Query:    1 MFEIKSSRNIANLITCKQGVDMSSFFKQNRQSINEVAQELEVHPGTVWRWTIQGVKGRRLKTVQIGGRRY 210
            MFEIKSSRNIANLITCKQGVDMSSFFKQNRQSINEVA ELEVHPGTVWRWTIQGVKGRRLKTVQIGGRRY
Sbjct:    1 MFEIKSSRNIANLITCKQGVDMSSFFKQNRQSINEVAHELEVHPGTVWRWTIQGVKGRRLKTVQIGGRRY 70
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BLAST of mRNA_M-pyrifera_M_contig120255.4186.1 vs. uniprot
Match: A0A2E7KFP6_9PLAN (HTH_17 domain-containing protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KFP6_9PLAN)

HSP 1 Score: 83.2 bits (204), Expect = 2.490e-19
Identity = 38/49 (77.55%), Postives = 42/49 (85.71%), Query Frame = 1 
Query:   64 MSSFFKQNRQSINEVAQELEVHPGTVWRWTIQGVKGRRLKTVQIGGRRY 210
            M+S F QNRQSINEVAQ L VHP TVWRWT  GVKGRRLKT++IGGRR+
Sbjct:    1 MNSVFNQNRQSINEVAQNLGVHPATVWRWTHSGVKGRRLKTIRIGGRRF 49
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BLAST of mRNA_M-pyrifera_M_contig120255.4186.1 vs. uniprot
Match: A0A3A0DIY9_9BACT (HTH_17 domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3A0DIY9_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 2.280e-8
Identity = 24/41 (58.54%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:   88 RQSINEVAQELEVHPGTVWRWTIQGVKGRRLKTVQIGGRRY 210
            R S+  +A EL V   TVWRWT++GV+G RL T+Q+GGRRY
Sbjct:   10 RVSLTRLAHELGVSTSTVWRWTLRGVRGHRLPTMQLGGRRY 50
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BLAST of mRNA_M-pyrifera_M_contig120255.4186.1 vs. uniprot
Match: A0A5C6CVR5_9BACT (Uncharacterized protein n=1 Tax=Bythopirellula polymerisocia TaxID=2528003 RepID=A0A5C6CVR5_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 1.800e-7
Identity = 22/49 (44.90%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:   64 MSSFFKQNRQSINEVAQELEVHPGTVWRWTIQGVKGRRLKTVQIGGRRY 210
            M   F +   S+N+VA+E  V+P T WRW + GV+G +L+T+ +GGRR+
Sbjct:    1 MYDLFSEEPISLNQVAKEEGVNPSTPWRWYLSGVRGVKLETIVVGGRRF 49
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BLAST of mRNA_M-pyrifera_M_contig120255.4186.1 vs. uniprot
Match: A0A517YGS3_9BACT (Helix-turn-helix domain protein n=1 Tax=Anatilimnocola aggregata TaxID=2528021 RepID=A0A517YGS3_9BACT)

HSP 1 Score: 52.8 bits (125), Expect = 2.720e-7
Identity = 25/44 (56.82%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:   82 QNRQSINEVAQELEVHPGTVWRWTIQ-GVKGRRLKTVQIGGRRY 210
            + R +IN+VA   +VH GTVWRW  + GV+GRRL +V +GGRRY
Sbjct:   13 RERFTINQVAAMFDVHVGTVWRWVSRRGVRGRRLPSVVVGGRRY 56
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120255.4186.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2D5H2I2_9PLAN9.890e-4398.57HTH_17 domain-containing protein n=2 Tax=Gimesia T... [more]
A0A2E7KFP6_9PLAN2.490e-1977.55HTH_17 domain-containing protein n=2 Tax=Gimesia T... [more]
A0A3A0DIY9_9BACT2.280e-858.54HTH_17 domain-containing protein n=1 Tax=Planctomy... [more]
A0A5C6CVR5_9BACT1.800e-744.90Uncharacterized protein n=1 Tax=Bythopirellula pol... [more]
A0A517YGS3_9BACT2.720e-756.82Helix-turn-helix domain protein n=1 Tax=Anatilimno... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120255contigM-pyrifera_M_contig120255:330..539 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size210
Cds size210
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815722.4020407-CDS-M-pyrifera_M_contig120255:329..5391622815722.4020407-CDS-M-pyrifera_M_contig120255:329..539Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120255 330..539 +
1692277538.3216736-CDS-M-pyrifera_M_contig120255:329..5391692277538.3216736-CDS-M-pyrifera_M_contig120255:329..539Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120255 330..539 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120255.4186.1prot_M-pyrifera_M_contig120255.4186.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120255 330..539 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120255.4186.1

>prot_M-pyrifera_M_contig120255.4186.1 ID=prot_M-pyrifera_M_contig120255.4186.1|Name=mRNA_M-pyrifera_M_contig120255.4186.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=70bp
MFEIKSSRNIANLITCKQGVDMSSFFKQNRQSINEVAQELEVHPGTVWRW
TIQGVKGRRLKTVQIGGRRY
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mRNA from alignment at M-pyrifera_M_contig120255:330..539+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120255.4186.1 ID=mRNA_M-pyrifera_M_contig120255.4186.1|Name=mRNA_M-pyrifera_M_contig120255.4186.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=210bp|location=Sequence derived from alignment at M-pyrifera_M_contig120255:330..539+ (Macrocystis pyrifera P11B4 male)
ATGTTTGAAATTAAATCCTCGCGAAACATAGCAAACTTAATCACTTGTAA
GCAAGGAGTGGATATGAGCAGTTTCTTTAAGCAGAACAGGCAATCCATTA
ACGAAGTCGCTCAAGAACTTGAAGTCCACCCCGGCACTGTCTGGCGTTGG
ACAATCCAAGGTGTGAAAGGTCGACGCCTTAAAACCGTTCAGATCGGTGG
TCGGCGGTAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120255:330..539+

>mRNA_M-pyrifera_M_contig120255.4186.1 ID=mRNA_M-pyrifera_M_contig120255.4186.1|Name=mRNA_M-pyrifera_M_contig120255.4186.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig120255:330..539+ (Macrocystis pyrifera P11B4 male)
ATGTTTGAAATTAAATCCTCGCGAAACATAGCAAACTTAATCACTTGTAA
GCAAGGAGTGGATATGAGCAGTTTCTTTAAGCAGAACAGGCAATCCATTA
ACGAAGTCGCTCAAGAACTTGAAGTCCACCCCGGCACTGTCTGGCGTTGG
ACAATCCAAGGTGTGAAAGGTCGACGCCTTAAAACCGTTCAGATCGGTGG
TCGGCGGTACATGTTTGAAATTAAATCCTCGCGAAACATAGCAAACTTAA
TCACTTGTAAGCAAGGAGTGGATATGAGCAGTTTCTTTAAGCAGAACAGG
CAATCCATTAACGAAGTCGCTCAAGAACTTGAAGTCCACCCCGGCACTGT
CTGGCGTTGGACAATCCAAGGTGTGAAAGGTCGACGCCTTAAAACCGTTC
AGATCGGTGGTCGGCGGTAC
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