mRNA_M-pyrifera_M_contig120249.4183.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120249.4183.1
Unique NamemRNA_M-pyrifera_M_contig120249.4183.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig120249.4183.1 vs. uniprot
Match: A0A2E7K7M2_9PLAN (FGE-sulfatase domain-containing protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A2E7K7M2_9PLAN)

HSP 1 Score: 355 bits (911), Expect = 6.160e-121
Identity = 173/179 (96.65%), Postives = 174/179 (97.21%), Query Frame = 1 
Query:    1 ASLYKFWFLLLMLGILTVPAPVLLAEESKAPGKPDRFPFPIKVDVKAGKTEGLPNRVQNPASGMWYALVPAGTYMIGSDQVWDSKEIQVQMSSYYISETCVTRSQLGPELWKHMQQADWHDEKIDSQVRQFPEELQVKFRLLEFMMTYEDERGIWRGMLELNPDLARDFDAAYAEFLKS 537
            ASLYK WFLLLMLGILTVPAPVLLAEESKAPGKPD FPFPIKVDVKAG+TEGLPNRVQNPASGMWYALVP GTY IGSDQVWDSKEIQVQMS YYISETCVTRSQLGPELWKHMQQADWHDEKIDSQVRQFPEELQVKFRLLEFMMTYEDERGIWRGMLELNPDLARDFDAAYAEFLKS
Sbjct:    4 ASLYKLWFLLLMLGILTVPAPVLLAEESKAPGKPDPFPFPIKVDVKAGETEGLPNRVQNPASGMWYALVPGGTYSIGSDQVWDSKEIQVQMSPYYISETCVTRSQLGPELWKHMQQADWHDEKIDSQVRQFPEELQVKFRLLEFMMTYEDERGIWRGMLELNPDLARDFDAAYAEFLKS 182
[Close]
BLAST of mRNA_M-pyrifera_M_contig120249.4183.1 vs. uniprot
Match: A0A518FUT3_9PLAN (Formylglycine-generating sulfatase enzyme n=1 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518FUT3_9PLAN)

HSP 1 Score: 306 bits (785), Expect = 8.130e-102
Identity = 150/179 (83.80%), Postives = 158/179 (88.27%), Query Frame = 1 
Query:    1 ASLYKFWFLLLMLGILTVPAPVLLAEESKAPGKPDRFPFPIKVDVKAGKTEGLPNRVQNPASGMWYALVPAGTYMIGSDQVWDSKEIQVQMSSYYISETCVTRSQLGPELWKHMQQADWHDEKIDSQVRQFPEELQVKFRLLEFMMTYEDERGIWRGMLELNPDLARDFDAAYAEFLKS 537
            ASL+K   +LLM+G+ T P   LLAEE KA  + DRFPFPIKVD+KAGKT+GLPNRVQNPASGMWY LVP GTY IGSDQ  DSKEIQVQMSSYYISETCVTRSQLGPELWKH+QQADWHDEKIDSQVRQFPEELQVKFRLLEFMMTYEDERGIWRGMLELNPDLA DFD AY EFL S
Sbjct:    4 ASLFKLCLVLLMIGVATGPMTALLAEEGKATKETDRFPFPIKVDLKAGKTQGLPNRVQNPASGMWYVLVPGGTYTIGSDQFQDSKEIQVQMSSYYISETCVTRSQLGPELWKHLQQADWHDEKIDSQVRQFPEELQVKFRLLEFMMTYEDERGIWRGMLELNPDLASDFDEAYTEFLDS 182
[Close]
BLAST of mRNA_M-pyrifera_M_contig120249.4183.1 vs. uniprot
Match: A6C8V1_9PLAN (FGE-sulfatase domain-containing protein n=5 Tax=Gimesia maris TaxID=122 RepID=A6C8V1_9PLAN)

HSP 1 Score: 220 bits (560), Expect = 6.030e-68
Identity = 105/174 (60.34%), Postives = 134/174 (77.01%), Query Frame = 1 
Query:    7 LYKFWFLLLMLGILTVPAPVLLAEESKAPGKPDRFPFPIKVDVKAGKTEGLPNRVQNPASGMWYALVPAGTYMIGSDQVWDSKEIQVQMSSYYISETCVTRSQLGPELWKHMQQADWHDEKIDSQVRQFPEELQVKFRLLEFMMTYEDERGIWRGMLELNPDLARDFDAAYAEF 528
            L K WF+LL+LG+   P   LLAEE KA  + DRFPFP+KVD +AG+T+GLPNRVQNP+SGMWYALVP GTY IGSDQ+WDSK+IQ+Q+S YYISETCVTR+QLG  L K++ Q +W  E++ + +RQ PEE Q  FRLL+FM+++  ER  W  +L+LNP+LA  F  AY +F
Sbjct:    6 LIKLWFVLLILGVSLGPTTPLLAEEGKAAKEADRFPFPVKVDSEAGQTDGLPNRVQNPSSGMWYALVPVGTYTIGSDQIWDSKKIQIQLSPYYISETCVTRAQLGQGLLKNLLQKEWFGEEMRTLIRQLPEEQQADFRLLDFMISFYTERDEWGDLLDLNPELASAFKDAYDKF 179
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120249.4183.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2E7K7M2_9PLAN6.160e-12196.65FGE-sulfatase domain-containing protein n=2 Tax=Gi... [more]
A0A518FUT3_9PLAN8.130e-10283.80Formylglycine-generating sulfatase enzyme n=1 Tax=... [more]
A6C8V1_9PLAN6.030e-6860.34FGE-sulfatase domain-containing protein n=5 Tax=Gi... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120249contigM-pyrifera_M_contig120249:2..538 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size537
Cds size537
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815722.3022294-CDS-M-pyrifera_M_contig120249:1..5381622815722.3022294-CDS-M-pyrifera_M_contig120249:1..538Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120249 2..538 -
1692277538.2931364-CDS-M-pyrifera_M_contig120249:1..5381692277538.2931364-CDS-M-pyrifera_M_contig120249:1..538Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120249 2..538 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120249.4183.1prot_M-pyrifera_M_contig120249.4183.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120249 2..538 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120249.4183.1

>prot_M-pyrifera_M_contig120249.4183.1 ID=prot_M-pyrifera_M_contig120249.4183.1|Name=mRNA_M-pyrifera_M_contig120249.4183.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=179bp
ASLYKFWFLLLMLGILTVPAPVLLAEESKAPGKPDRFPFPIKVDVKAGKT
EGLPNRVQNPASGMWYALVPAGTYMIGSDQVWDSKEIQVQMSSYYISETC
VTRSQLGPELWKHMQQADWHDEKIDSQVRQFPEELQVKFRLLEFMMTYED
ERGIWRGMLELNPDLARDFDAAYAEFLKS
back to top

mRNA from alignment at M-pyrifera_M_contig120249:2..538-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120249.4183.1 ID=mRNA_M-pyrifera_M_contig120249.4183.1|Name=mRNA_M-pyrifera_M_contig120249.4183.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=537bp|location=Sequence derived from alignment at M-pyrifera_M_contig120249:2..538- (Macrocystis pyrifera P11B4 male)
GCTTCGCTCTACAAGTTCTGGTTTCTCCTGCTGATGCTTGGCATCCTCAC
GGTGCCGGCTCCAGTCCTCCTGGCAGAGGAATCAAAGGCTCCCGGGAAAC
CCGACCGCTTTCCGTTTCCGATCAAAGTCGACGTGAAAGCAGGCAAAACA
GAGGGCTTACCAAATCGAGTACAGAATCCCGCATCCGGAATGTGGTATGC
ACTGGTTCCCGCAGGCACCTACATGATCGGCTCAGATCAGGTTTGGGATT
CCAAAGAAATCCAGGTGCAAATGAGCTCTTATTATATCTCTGAAACGTGC
GTGACCCGCTCCCAGCTTGGGCCGGAATTGTGGAAACACATGCAGCAGGC
AGATTGGCATGATGAAAAGATAGATAGTCAGGTCCGCCAGTTTCCCGAAG
AACTACAGGTCAAATTTCGGTTACTGGAATTTATGATGACTTACGAGGAT
GAGCGCGGCATATGGAGAGGAATGCTGGAATTAAATCCAGATTTAGCAAG
AGACTTTGATGCAGCCTATGCAGAGTTTTTGAAAAGT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig120249:2..538-

>mRNA_M-pyrifera_M_contig120249.4183.1 ID=mRNA_M-pyrifera_M_contig120249.4183.1|Name=mRNA_M-pyrifera_M_contig120249.4183.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1074bp|location=Sequence derived from alignment at M-pyrifera_M_contig120249:2..538- (Macrocystis pyrifera P11B4 male)
GCTTCGCTCTACAAGTTCTGGTTTCTCCTGCTGATGCTTGGCATCCTCAC
GGTGCCGGCTCCAGTCCTCCTGGCAGAGGAATCAAAGGCTCCCGGGAAAC
CCGACCGCTTTCCGTTTCCGATCAAAGTCGACGTGAAAGCAGGCAAAACA
GAGGGCTTACCAAATCGAGTACAGAATCCCGCATCCGGAATGTGGTATGC
ACTGGTTCCCGCAGGCACCTACATGATCGGCTCAGATCAGGTTTGGGATT
CCAAAGAAATCCAGGTGCAAATGAGCTCTTATTATATCTCTGAAACGTGC
GTGACCCGCTCCCAGCTTGGGCCGGAATTGTGGAAACACATGCAGCAGGC
AGATTGGCATGATGAAAAGATAGATAGTCAGGTCCGCCAGTTTCCCGAAG
AACTACAGGTCAAATTTCGGTTACTGGAATTTATGATGACTTACGAGGAT
GAGCGCGGCATATGGAGAGGAATGCTGGAATTAAATCCAGATTTAGCAAG
AGACTTTGATGCAGCCTATGCAGAGTTTTTGAAAAGTGCTTCGCTCTACA
AGTTCTGGTTTCTCCTGCTGATGCTTGGCATCCTCACGGTGCCGGCTCCA
GTCCTCCTGGCAGAGGAATCAAAGGCTCCCGGGAAACCCGACCGCTTTCC
GTTTCCGATCAAAGTCGACGTGAAAGCAGGCAAAACAGAGGGCTTACCAA
ATCGAGTACAGAATCCCGCATCCGGAATGTGGTATGCACTGGTTCCCGCA
GGCACCTACATGATCGGCTCAGATCAGGTTTGGGATTCCAAAGAAATCCA
GGTGCAAATGAGCTCTTATTATATCTCTGAAACGTGCGTGACCCGCTCCC
AGCTTGGGCCGGAATTGTGGAAACACATGCAGCAGGCAGATTGGCATGAT
GAAAAGATAGATAGTCAGGTCCGCCAGTTTCCCGAAGAACTACAGGTCAA
ATTTCGGTTACTGGAATTTATGATGACTTACGAGGATGAGCGCGGCATAT
GGAGAGGAATGCTGGAATTAAATCCAGATTTAGCAAGAGACTTTGATGCA
GCCTATGCAGAGTTTTTGAAAAGT
back to top