mRNA_M-pyrifera_M_contig120238.4181.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120238.4181.1
Unique NamemRNA_M-pyrifera_M_contig120238.4181.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig120238.4181.1 vs. uniprot
Match: A0A7Y5C565_9BACT (Penicillin acylase family protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7Y5C565_9BACT)

HSP 1 Score: 190 bits (483), Expect = 6.640e-53
Identity = 91/176 (51.70%), Postives = 118/176 (67.05%), Query Frame = 1
Query:   16 GGYRDFGAIRQLYWMGRASGLVQFQEALQMHQLPTFHVTYADATGNLFYLYNAKVGDKRNLDGMR---IRNQAE---AP----RWDAPLPSNDARFTWRGVVSVTQLPSLQNPASGFLQACGNPPWTVTDDTEALWGTFPVWFGREPDTYRARRVRQMLSSGGKSFRDMQDMLYDV 513
            GG+RDFGAIRQL+ M  A+   QF+ AL   QLPTFH+ YAD  GNL YLYN+KVG K      R   + N+ +   AP     WDAP+P+ND RF W  +V + QLP ++NP SG++QACGNPPWT TD +      +P W   +PDT+RARRVR++LS G +S++D Q M+YDV
Sbjct:  344 GGFRDFGAIRQLHLMASATDYQQFRAALNEQQLPTFHIVYADHAGNLLYLYNSKVGAKNTPPPARDQILANRQQNTNAPLNIISWDAPVPANDTRFAWGPIVRIDQLPLIENPKSGYVQACGNPPWTATDGSGVDPNQYPPWLVHDPDTFRARRVRRLLSMGARSYQDAQAMVYDV 519          
BLAST of mRNA_M-pyrifera_M_contig120238.4181.1 vs. uniprot
Match: A0A7C1CNI8_9BACT (Penicillin acylase family protein (Fragment) n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7C1CNI8_9BACT)

HSP 1 Score: 174 bits (441), Expect = 1.570e-47
Identity = 84/172 (48.84%), Postives = 107/172 (62.21%), Query Frame = 1
Query:    4 TWKAGGYRDFGAIRQLYWMGRASGLVQFQEALQMHQLPTFHVTYADATGNLFYLYNAKVGDKR--NLDGMRIRNQAEAPRWDAPLPSNDARFTWRGVVSVTQLPSLQNPASGFLQACGNPPWTVTDDTEALWGTFPVWFGREPDTYRARRVRQMLSSGGKSFRDMQDMLYDV 513
            +W  GG+ DFG +RQL  M RA  +  F  AL MHQLP FHVTYAD   N+FYLYN K G +     DG    + A   +WD P+ S+ +   W  V ++ +LP++ NPASG++QACGN PWTVT+        +P W   + DTYRA RVRQ+L  G +SFRD Q MLYDV
Sbjct:  347 SWYIGGFTDFGGLRQLVEMARAPNIEMFWAALSMHQLPCFHVTYADCHNNIFYLYNTKAGLRLWPPKDGTNPDDPAINQQWDVPVSSDLSALAWHDVFALNELPAILNPASGYVQACGNTPWTVTEPCPLDPSLWPPWLFFDKDTYRAARVRQLLRKGQRSFRDHQSMLYDV 518          
BLAST of mRNA_M-pyrifera_M_contig120238.4181.1 vs. uniprot
Match: A0A7V2Y6P7_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7V2Y6P7_9BACT)

HSP 1 Score: 171 bits (432), Expect = 4.750e-46
Identity = 88/192 (45.83%), Postives = 105/192 (54.69%), Query Frame = 1
Query:   16 GGYRDFGAIRQLYWMGRASGLVQFQEALQMHQLPTFHVTYADATGNLFYLYNAKVGDKRNLDG--------------------------MRIRNQAEAPRWDAPLPSNDARFTWRGVVSVTQLPSLQNPASGFLQACGNPPWTVTDDTEALWGTFPVWFGREPDTYRARRVRQMLSSGGKSFRDMQDMLYDV 513
            GGY DFGAI QL  M  A  L +F  AL MHQLP FH+ YAD  GN+FY YNAK+GDK   DG                               +     W APL   +  F W+G++    LPSL NP SG+LQACG PPW VTD T       P WF R+ D+ RA+RVR++L+ G +SFRD Q MLYDV
Sbjct:  363 GGYEDFGAIAQLMEMAHAQNLGEFLAALAMHQLPCFHIVYADREGNIFYRYNAKMGDKPVADGPPXXXXXXXKEPEPGMPNLAXXXXXXXXXXREPAIIDWTAPLDGANPLFRWQGIIPPDALPSLANPPSGYLQACGTPPWAVTDGTGLDPAQLPGWFSRDRDSLRAQRVRRLLAMGKRSFRDCQAMLYDV 554          
BLAST of mRNA_M-pyrifera_M_contig120238.4181.1 vs. uniprot
Match: A0A7V7JNG5_9BACT (Penicillin acylase family protein n=2 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7V7JNG5_9BACT)

HSP 1 Score: 164 bits (415), Expect = 9.560e-44
Identity = 80/173 (46.24%), Postives = 105/173 (60.69%), Query Frame = 1
Query:   16 GGYRDFGAIRQLYWMGRASGLVQFQEALQMHQLPTFHVTYADATGNLFYLYNAKVGDKRN--LDGMRIRNQAEAPR-----WDAPLPSNDARFTWRGVVSVTQLPSLQNPASGFLQACGNPPWTVTDDTEALWGTFPVWFGREPDTYRARRVRQMLSSGGKSFRDMQDMLYDV 513
            GGYRDFG + QL  M  A  L QF EAL+ HQLP FH+ YAD  GN+ Y YNAK+G KR   L G  +R +A+        W  PLP  D R TW   +  + LP++ NP +G++QAC   PW V+DD E     +P W  ++ D+ RA+RVR +L +G +S  +MQ MLYDV
Sbjct:  347 GGYRDFGGLSQLVEMAGAQDLDQFIEALERHQLPCFHIVYADRDGNILYRYNAKLGAKRMVPLPGATVRGEADPEPISYYDWTQPLPGEDLRLTWGDPIPASALPTILNPPAGYVQACETLPWNVSDDLECRPEDWPEWIFQDRDSLRAQRVRSLLRTGARSSHEMQSMLYDV 519          
BLAST of mRNA_M-pyrifera_M_contig120238.4181.1 vs. uniprot
Match: A0A1V5Z094_9BACT (Glutaryl-7-aminocephalosporanic-acid acylase n=1 Tax=Candidatus Hydrogenedentes bacterium ADurb.Bin170 TaxID=1852848 RepID=A0A1V5Z094_9BACT)

HSP 1 Score: 163 bits (412), Expect = 2.410e-43
Identity = 79/173 (45.66%), Postives = 102/173 (58.96%), Query Frame = 1
Query:    1 YTWKAGGYRDFGAIRQLYWMGRASGLVQFQEALQMHQLPTFHVTYADATGNLFYLYNAKVGDKRNLDGMRIRNQA--EAPRWDAPLPSNDARFTWRGVVSVTQLPSLQNPASGFLQACGNPPWTVTDDTEALWGTFPVWFGREPDTYRARRVRQMLSSGGKSFRDMQDMLYDV 513
            ++W  GGYR+    RQL  M  A+ L  FQ AL   Q+P FH+ YAD  G++FY+YN + G + N   +    Q   E  RW  P     A   W  V+    LP L NP SG++QACGNPPWT T+      G +PVW   +PDTYRARR+RQ+L +G +SFRD Q +LYDV
Sbjct:  388 HSWLIGGYRELNGFRQLLDMAFATELGAFQSALNGMQIPCFHIVYADRHGDIFYIYNTRTGTRINEATLTPGGQGAPEPIRWYEPQTFKYAPVAWHRVIPPANLPYLVNPPSGYVQACGNPPWTATEGAALNPGQWPVWLSADPDTYRARRIRQLLHAGIRSFRDHQSILYDV 560          
BLAST of mRNA_M-pyrifera_M_contig120238.4181.1 vs. uniprot
Match: A0A7Z9LRS9_9BACT (Penicillin acylase family protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7Z9LRS9_9BACT)

HSP 1 Score: 157 bits (398), Expect = 1.780e-41
Identity = 77/172 (44.77%), Postives = 103/172 (59.88%), Query Frame = 1
Query:    1 YTWKAGGYRDFGAIRQLYWMGRASGLVQFQEALQMHQLPTFHVTYADATGNLFYLYNAKVGDKRNL-DGMRIRNQAEAPRWDAPLPSNDARFTWRGVVSVTQLPSLQNPASGFLQACGNPPWTVTDDTEALWGTFPVWFGREPDTYRARRVRQMLSSGGKSFRDMQDMLYDV 513
            Y ++ GGYRDFG +RQL+ MGRA  L +FQ+     QLP FH  Y D +GNLFY YNAKVGDK  L D      +     W++P+ ++     W   ++  QLP L NP SG++QA G P   VT+ T     ++  WF R+PD+YRA+R+RQ+   G  SF D Q +LYD 
Sbjct:  360 YAYQVGGYRDFGGLRQLFDMGRAQDLERFQKVWNRQQLPLFHAVYTDRSGNLFYSYNAKVGDKSYLQDHREFEPRLSKTLWESPVSTDTPGAYWGSTLAPGQLPWLINPESGYIQASGTPXXXVTEGTGWSRDSWADWFVRDPDSYRAKRLRQLFQHGKFSFEDNQSILYDT 531          
BLAST of mRNA_M-pyrifera_M_contig120238.4181.1 vs. uniprot
Match: A0A847GB70_9BACT (Penicillin acylase family protein (Fragment) n=1 Tax=Candidatus Hydrogenedens sp. TaxID=2654184 RepID=A0A847GB70_9BACT)

HSP 1 Score: 152 bits (384), Expect = 1.060e-40
Identity = 72/161 (44.72%), Postives = 100/161 (62.11%), Query Frame = 1
Query:    1 YTWKAGGYRDFGAIRQLYWMGRASGLVQFQEALQMHQLPTFHVTYADATGNLFYLYNAKVGDKRNLDGMRIRNQAEAP-RWDAPLPSNDARFTWRGVVSVTQLPSLQNPASGFLQACGNPPWTVTDDTEALWGTFPVWFGREPDTYRARRVRQMLSSGGKS 480
            ++W+ GGY   G +RQL  MGRA  L QFQ AL   Q+P FHV YAD  GN+FYLYN + G + ++  +      + P  +D PLP       W  +V+V  LP++ NPASG++QACGNPPWTVT++       +P W  R+ D++RA R RQ+L +G +S
Sbjct:  342 FSWRIGGYGMTGGLRQLIEMGRAQNLAQFQAALSAGQIPCFHVVYADREGNIFYLYNTRPGLRPDMPPVLNNTPGQEPLSYDRPLPLTLDVLGWAELVAVDALPAITNPASGYVQACGNPPWTVTENPPFGPANWPGWLARDGDSHRAMRARQLLRAGTRS 502          
BLAST of mRNA_M-pyrifera_M_contig120238.4181.1 vs. uniprot
Match: A0A831UP03_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A831UP03_9BACT)

HSP 1 Score: 145 bits (366), Expect = 8.840e-38
Identity = 70/150 (46.67%), Postives = 88/150 (58.67%), Query Frame = 1
Query:   94 ALQMHQLPTFHVTYADATGNLFYLYNAKVGDKRNLDGMRIRNQAEAPR----------WDAPLPSNDARFTWRGVVSVTQLPSLQNPASGFLQACGNPPWTVTDDTEALWGTFPVWFGREPDTYRARRVRQMLSSGGKSFRDMQDMLYDV 513
            AL MHQLP FHV YAD  GN+FYLYNAK G +       +    E             W AP    D    W G+V V  LP+++NPA+G++QACGNPPW V+  +      +P W   +PDTYRA+RVRQ+L  G +SFRD Q M+YDV
Sbjct:    1 ALAMHQLPCFHVVYADREGNIFYLYNAKTGQRFVPLPSPLPETEEXXXXXXXXPLHIDWSAPRAGEDPVGAWEGIVPVEALPAIENPATGYIQACGNPPWGVSSASPLRPTHWPSWLVTDPDTYRAKRVRQLLDMGRRSFRDSQSMVYDV 150          
BLAST of mRNA_M-pyrifera_M_contig120238.4181.1 vs. uniprot
Match: A0A7C4V3K4_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7C4V3K4_9BACT)

HSP 1 Score: 129 bits (324), Expect = 1.610e-31
Identity = 63/173 (36.42%), Postives = 96/173 (55.49%), Query Frame = 1
Query:    1 YTWKAGGYRDFGAIRQLYWMGRASGLVQFQEALQMHQLPTFHVTYADATGNLFYLYNAKVGDKRNLDGMRIRNQAEAP--RWDAPLPSNDARFTWRGVVSVTQLPSLQNPASGFLQACGNPPWTVTDDTE-ALWGTFPVWFGREPDTYRARRVRQMLSSGGKSFRDMQDMLYD 510
            +TWK GGY D G   QL+ MGRA    QF  A+ MHQLP FH+ YAD +  L+Y+Y++K G +    G++I    +    +W  P+ S      WR ++   QLPS+ NP +G++Q CG PP + TDD +   +  +      + +   +RRV+  L +  +S  D+Q +L D
Sbjct:  327 FTWKIGGYEDIGIFLQLWEMGRAKSCEQFISAVWMHQLPCFHILYADNSNQLYYIYSSKAGTREPPPGLKINEAIDIQNIKWHTPVQSKYYSIGWRYLIPPEQLPSILNPPNGYIQVCGGPPDSTTDDIQFPNYELYKEKLIMDVENVVSRRVKGYLRTDKRSLHDVQSILLD 499          
BLAST of mRNA_M-pyrifera_M_contig120238.4181.1 vs. uniprot
Match: A0A1V6EIN9_9BACT (Glutaryl-7-aminocephalosporanic-acid acylase n=1 Tax=Candidatus Hydrogenedentes bacterium ADurb.Bin101 TaxID=1852847 RepID=A0A1V6EIN9_9BACT)

HSP 1 Score: 94.0 bits (232), Expect = 3.360e-19
Identity = 41/81 (50.62%), Postives = 54/81 (66.67%), Query Frame = 1
Query:  271 FTWRGVVSVTQLPSLQNPASGFLQACGNPPWTVTDDTEALWGTFPVWFGREPDTYRARRVRQMLSSGGKSFRDMQDMLYDV 513
              WRGVV    LP + NP SGF+QACGNPPWT T        ++P W  ++ D++RA+R+RQ+L  G +SFRD Q ML+DV
Sbjct:    1 MAWRGVVLPDMLPCIINPPSGFIQACGNPPWTATTPGALNPVSWPEWLVQDRDSFRAKRLRQLLREGKRSFRDHQSMLFDV 81          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120238.4181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Y5C565_9BACT6.640e-5351.70Penicillin acylase family protein n=1 Tax=Candidat... [more]
A0A7C1CNI8_9BACT1.570e-4748.84Penicillin acylase family protein (Fragment) n=1 T... [more]
A0A7V2Y6P7_9BACT4.750e-4645.83Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
A0A7V7JNG5_9BACT9.560e-4446.24Penicillin acylase family protein n=2 Tax=Candidat... [more]
A0A1V5Z094_9BACT2.410e-4345.66Glutaryl-7-aminocephalosporanic-acid acylase n=1 T... [more]
A0A7Z9LRS9_9BACT1.780e-4144.77Penicillin acylase family protein n=1 Tax=Candidat... [more]
A0A847GB70_9BACT1.060e-4044.72Penicillin acylase family protein (Fragment) n=1 T... [more]
A0A831UP03_9BACT8.840e-3846.67Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
A0A7C4V3K4_9BACT1.610e-3136.42Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
A0A1V6EIN9_9BACT3.360e-1950.62Glutaryl-7-aminocephalosporanic-acid acylase n=1 T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120238contigM-pyrifera_M_contig120238:11..523 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score89.7
Seed ortholog evalue1.4e-15
Seed eggNOG ortholog1173026.Glo7428_1780
KEGG koko:K07116
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PFAM peptidase S45 penicillin amidase
EggNOG OGs1G0QT@1117,COG2366@1,COG2366@2
EC3.5.1.97
COG Functional cat.S
Best tax levelCyanobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons1
Model size513
Cds size513
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815722.2306342-CDS-M-pyrifera_M_contig120238:10..5231622815722.2306342-CDS-M-pyrifera_M_contig120238:10..523Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120238 11..523 -
1692277538.27182-CDS-M-pyrifera_M_contig120238:10..5231692277538.27182-CDS-M-pyrifera_M_contig120238:10..523Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120238 11..523 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120238.4181.1prot_M-pyrifera_M_contig120238.4181.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120238 11..523 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120238.4181.1

>prot_M-pyrifera_M_contig120238.4181.1 ID=prot_M-pyrifera_M_contig120238.4181.1|Name=mRNA_M-pyrifera_M_contig120238.4181.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=171bp
YTWKAGGYRDFGAIRQLYWMGRASGLVQFQEALQMHQLPTFHVTYADATG
NLFYLYNAKVGDKRNLDGMRIRNQAEAPRWDAPLPSNDARFTWRGVVSVT
QLPSLQNPASGFLQACGNPPWTVTDDTEALWGTFPVWFGREPDTYRARRV
RQMLSSGGKSFRDMQDMLYDV
back to top

mRNA from alignment at M-pyrifera_M_contig120238:11..523-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120238.4181.1 ID=mRNA_M-pyrifera_M_contig120238.4181.1|Name=mRNA_M-pyrifera_M_contig120238.4181.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=513bp|location=Sequence derived from alignment at M-pyrifera_M_contig120238:11..523- (Macrocystis pyrifera P11B4 male)
TACACTTGGAAGGCGGGCGGATACCGGGACTTTGGCGCGATTCGACAGTT GTATTGGATGGGGCGTGCGTCGGGGTTGGTTCAATTTCAGGAAGCGCTGC AGATGCACCAGCTTCCTACATTCCATGTGACGTATGCGGATGCTACGGGC AATCTTTTTTATCTCTACAATGCGAAAGTCGGGGACAAGCGAAATCTCGA TGGCATGCGAATTCGGAATCAGGCTGAAGCGCCGCGTTGGGATGCGCCCT TGCCTTCCAATGATGCGCGATTCACATGGCGCGGCGTCGTTTCGGTTACT CAGTTGCCATCGTTGCAAAACCCGGCTAGTGGATTCTTGCAGGCGTGTGG CAATCCGCCGTGGACGGTGACCGACGATACCGAAGCGCTGTGGGGGACGT TTCCTGTGTGGTTTGGGCGGGAGCCGGACACCTATCGAGCGCGGCGAGTT CGCCAGATGTTGAGCAGCGGGGGGAAATCATTTCGCGATATGCAGGACAT GCTGTACGACGTG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig120238:11..523-

>mRNA_M-pyrifera_M_contig120238.4181.1 ID=mRNA_M-pyrifera_M_contig120238.4181.1|Name=mRNA_M-pyrifera_M_contig120238.4181.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1026bp|location=Sequence derived from alignment at M-pyrifera_M_contig120238:11..523- (Macrocystis pyrifera P11B4 male)
TACACTTGGAAGGCGGGCGGATACCGGGACTTTGGCGCGATTCGACAGTT
GTATTGGATGGGGCGTGCGTCGGGGTTGGTTCAATTTCAGGAAGCGCTGC
AGATGCACCAGCTTCCTACATTCCATGTGACGTATGCGGATGCTACGGGC
AATCTTTTTTATCTCTACAATGCGAAAGTCGGGGACAAGCGAAATCTCGA
TGGCATGCGAATTCGGAATCAGGCTGAAGCGCCGCGTTGGGATGCGCCCT
TGCCTTCCAATGATGCGCGATTCACATGGCGCGGCGTCGTTTCGGTTACT
CAGTTGCCATCGTTGCAAAACCCGGCTAGTGGATTCTTGCAGGCGTGTGG
CAATCCGCCGTGGACGGTGACCGACGATACCGAAGCGCTGTGGGGGACGT
TTCCTGTGTGGTTTGGGCGGGAGCCGGACACCTATCGAGCGCGGCGAGTT
CGCCAGATGTTGAGCAGCGGGGGGAAATCATTTCGCGATATGCAGGACAT
GCTGTACGACGTGTACACTTGGAAGGCGGGCGGATACCGGGACTTTGGCG
CGATTCGACAGTTGTATTGGATGGGGCGTGCGTCGGGGTTGGTTCAATTT
CAGGAAGCGCTGCAGATGCACCAGCTTCCTACATTCCATGTGACGTATGC
GGATGCTACGGGCAATCTTTTTTATCTCTACAATGCGAAAGTCGGGGACA
AGCGAAATCTCGATGGCATGCGAATTCGGAATCAGGCTGAAGCGCCGCGT
TGGGATGCGCCCTTGCCTTCCAATGATGCGCGATTCACATGGCGCGGCGT
CGTTTCGGTTACTCAGTTGCCATCGTTGCAAAACCCGGCTAGTGGATTCT
TGCAGGCGTGTGGCAATCCGCCGTGGACGGTGACCGACGATACCGAAGCG
CTGTGGGGGACGTTTCCTGTGTGGTTTGGGCGGGAGCCGGACACCTATCG
AGCGCGGCGAGTTCGCCAGATGTTGAGCAGCGGGGGGAAATCATTTCGCG
ATATGCAGGACATGCTGTACGACGTG
back to top