mRNA_M-pyrifera_M_contig12020.4167.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12020.4167.1
Unique NamemRNA_M-pyrifera_M_contig12020.4167.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig12020.4167.1 vs. uniprot
Match: A0A6H5KFI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFI5_9PHAE)

HSP 1 Score: 227 bits (579), Expect = 1.410e-71
Identity = 124/172 (72.09%), Postives = 144/172 (83.72%), Query Frame = 1
Query:    1 MAPSPVVSAALTALVACFAFA-VMYGGQQ--SKHQGGGEYQLGSGKMFDAIAPRYDLINKVISLGLDMQWRRAMIDGLELRPGDRVVDMATGTADVAILISQELAKLESRGGD--TMPGSDVPAVIGIDPSANMLDVGRKKAADAGLSSRVVLQIGDAQDLSDIADGSVDKV 501
            M P    SA LTA+ AC A+A + +GGQQ  S+ +GGGEY+LGSGKMFD+IAPRYDLINKVISLGLDMQWR+AM+ GLELR GDRVVDMATGTADVAI+IS+ELAKLE   GD  T+ G+  P VIGIDPSA ML+VGR+K A+AGL SR+ LQIGDAQDL+DIADGSVDK+
Sbjct:    1 MKPCGATSAVLTAVAACVAYAFIFWGGQQQRSRSEGGGEYELGSGKMFDSIAPRYDLINKVISLGLDMQWRKAMVRGLELRDGDRVVDMATGTADVAIMISEELAKLEGTPGDRGTISGTVEPEVIGIDPSARMLEVGREKVAEAGLCSRIRLQIGDAQDLADIADGSVDKL 172          
BLAST of mRNA_M-pyrifera_M_contig12020.4167.1 vs. uniprot
Match: D8LTT5_ECTSI (Ubiquinone/menaquinone biosynthesis methyltransferase ubiE, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTT5_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 1.140e-57
Identity = 99/124 (79.84%), Postives = 110/124 (88.71%), Query Frame = 1
Query:  130 MFDAIAPRYDLINKVISLGLDMQWRRAMIDGLELRPGDRVVDMATGTADVAILISQELAKLESRGGDTMPGSDVPAVIGIDPSANMLDVGRKKAADAGLSSRVVLQIGDAQDLSDIADGSVDKV 501
            MFD+IAPRYDLINKVISLGLDMQWRRAM+ GL LR GDRVVDMATGTADVAI+IS+ELAKLE     T+PG+  P VIGIDPSA ML+VGR+K A+AGLSSRV LQIGDAQDL+DIADGSVDK+
Sbjct:    1 MFDSIAPRYDLINKVISLGLDMQWRRAMVRGLGLRAGDRVVDMATGTADVAIMISEELAKLEGAPEGTIPGTVEPEVIGIDPSARMLEVGREKVAEAGLSSRVRLQIGDAQDLADIADGSVDKL 124          
BLAST of mRNA_M-pyrifera_M_contig12020.4167.1 vs. uniprot
Match: A0A7S2V4B4_9STRA (2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4B4_9STRA)

HSP 1 Score: 135 bits (340), Expect = 4.930e-36
Identity = 73/138 (52.90%), Postives = 94/138 (68.12%), Query Frame = 1
Query:  106 EYQLGSGKMFDAIAPRYDLINKVISLGLDMQWRRAMIDGLELRPGDRVVDMATGTADVAILISQELAKLESRGGDTMPGSD--VPA----VIGIDPSANMLDVGRKKAADAGLSSRVVLQIGDAQDLSDIADGSVDKV 501
            E ++GSG+MFD IA  YD INK++SLGLD  WR  M+  LEL+  D+V+D+ATGTADVAIL+ Q++ +L  + G+    +D   PA    V+GIDPSANMLD GRKK  +  L   V LQ+GDAQDL  +   S DKV
Sbjct:   35 EVEMGSGRMFDTIAAHYDSINKMMSLGLDQTWRGKMVAALELQHEDKVLDLATGTADVAILVGQKITELAKKSGNQHCSNDGSCPAGKQQVVGIDPSANMLDNGRKKVTEKELDQVVTLQLGDAQDLKGLKSSSFDKV 172          
BLAST of mRNA_M-pyrifera_M_contig12020.4167.1 vs. uniprot
Match: A0A0G4EH38_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EH38_VITBC)

HSP 1 Score: 134 bits (337), Expect = 1.480e-35
Identity = 72/136 (52.94%), Postives = 96/136 (70.59%), Query Frame = 1
Query:   94 QGGGEYQLGSGKMFDAIAPRYDLINKVISLGLDMQWRRAMIDGLELRPGDRVVDMATGTADVAILISQELAKLESRGGDTMPGSDVPAVIGIDPSANMLDVGRKKAADAGLSSRVVLQIGDAQDLSDIADGSVDKV 501
            +G  E  +GSG+MFDA+APRYD +N+V+S+G+D  WRR ++  L+L P DRV+D+ATGTADVAIL+ Q++   +SR  DT    D P VIG+DPSANML VGR K + A L+  V L++GDA  L    D S DK+
Sbjct:   43 KGQSEAAMGSGRMFDAVAPRYDFVNRVMSMGMDRAWRRRLVQTLQLEPSDRVLDVATGTADVAILVGQQM---KSRENDTK--RDGPCVIGVDPSANMLAVGRDKVSRAFLNDTVSLELGDALALQ-YEDSSFDKI 172          
BLAST of mRNA_M-pyrifera_M_contig12020.4167.1 vs. uniprot
Match: A0A7S0DP24_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DP24_9EUKA)

HSP 1 Score: 129 bits (325), Expect = 6.710e-34
Identity = 69/133 (51.88%), Postives = 90/133 (67.67%), Query Frame = 1
Query:  103 GEYQLGSGKMFDAIAPRYDLINKVISLGLDMQWRRAMIDGLELRPGDRVVDMATGTADVAILISQELAKLESRGGDTMPGSDVPAVIGIDPSANMLDVGRKKAADAGLSSRVVLQIGDAQDLSDIADGSVDKV 501
            GE  LGSG+MFD +APRYDLIN+V+SL +D  WR  ++  LEL+ GDRV+D+ATGTADVAIL +++   +E              V+GIDPS NM+++GR K  + GL +R+ LQIGDA  L  I D S DKV
Sbjct:   35 GEPALGSGRMFDEVAPRYDLINRVMSLTMDQSWRLELVSSLELQDGDRVLDLATGTADVAILEAKDEKGVE--------------VLGIDPSENMIELGRSKILNEGLENRISLQIGDAMALDTIQDASFDKV 153          
BLAST of mRNA_M-pyrifera_M_contig12020.4167.1 vs. uniprot
Match: A0A835YHX6_9STRA (UbiE/COQ5 methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHX6_9STRA)

HSP 1 Score: 127 bits (320), Expect = 2.440e-33
Identity = 69/136 (50.74%), Postives = 93/136 (68.38%), Query Frame = 1
Query:  106 EYQLGSGKMFDAIAPRYDLINKVISLGLDMQWRRAMIDGLELRPGDRVVDMATGTADVAILISQEL---AKLESRGGDTMPGSDVPA-VIGIDPSANMLDVGRKKAADAGLSSRVVLQIGDAQDLSDIADGSVDKV 501
            E  LGSG MFD+IA +YD++N+ +SLG+DM WR+ ++  L+L+PGDRV+D+ATGTADVAIL  + L   A+  +  G    G      V+GIDPSANML  GR K A  GL   V LQ+GDAQ L ++++ S DK+
Sbjct:   12 EAPLGSGSMFDSIAGQYDIVNRFLSLGMDMSWRKILLQELQLQPGDRVLDLATGTADVAILEGEALRAMAEAAASSGSKGAGKQKKGMVVGIDPSANMLAHGRDKVAAKGLDGIVKLQLGDAQALKELSNRSFDKI 147          
BLAST of mRNA_M-pyrifera_M_contig12020.4167.1 vs. uniprot
Match: A0A7S2H0R6_9STRA (2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H0R6_9STRA)

HSP 1 Score: 124 bits (311), Expect = 3.840e-32
Identity = 67/120 (55.83%), Postives = 86/120 (71.67%), Query Frame = 1
Query:  103 GEYQLGSGKMFDAIAPRYDLINKVISLGLDMQWRRAMIDGLELRPGDRVVDMATGTADVAILISQELAKLESRGGDTMPGSDVPAVIGIDPSANMLDVGRKKAADAGLSSRVVLQIGDAQ 462
            G   LGSG+MFDAIA RYD++NKVISLG D+ WRRA++D L++   D V+D+ATGTADVAI+IS++ +   SRG +         V G+DPSANML++GR+K A A LS  V L  GDAQ
Sbjct:   11 GSQPLGSGEMFDAIAKRYDMVNKVISLGSDVAWRRALVDALDITSEDNVLDLATGTADVAIMISRDAS---SRGAN---------VTGLDPSANMLEIGREKVAAADLSKTVTLIQGDAQ 118          
BLAST of mRNA_M-pyrifera_M_contig12020.4167.1 vs. uniprot
Match: F0XXU4_AURAN (2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XXU4_AURAN)

HSP 1 Score: 122 bits (307), Expect = 8.150e-32
Identity = 66/124 (53.23%), Postives = 80/124 (64.52%), Query Frame = 1
Query:  130 MFDAIAPRYDLINKVISLGLDMQWRRAMIDGLELRPGDRVVDMATGTADVAILISQELAKLESRGGDTMPGSDVPAVIGIDPSANMLDVGRKKAADAGLSSRVVLQIGDAQDLSDIADGSVDKV 501
            MF+ IA RYDL NK +SLG+D  WRR ++  LEL P DRV+D+ATGTADVAIL                 G+  PAV+G+DPSANML +GR K A AGL   V L +GDA DL  +ADG  DK+
Sbjct:    1 MFNRIARRYDLANKFMSLGMDQGWRRGLVAALELAPSDRVLDLATGTADVAIL----------------EGAAGPAVLGVDPSANMLAIGRTKVAAAGLDGTVELALGDATDLEHLADGGFDKI 108          
BLAST of mRNA_M-pyrifera_M_contig12020.4167.1 vs. uniprot
Match: W7TJU2_9STRA (Ubiquinone menaquinone biosynthesis methyltransferase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJU2_9STRA)

HSP 1 Score: 122 bits (306), Expect = 1.850e-31
Identity = 66/129 (51.16%), Postives = 86/129 (66.67%), Query Frame = 1
Query:  115 LGSGKMFDAIAPRYDLINKVISLGLDMQWRRAMIDGLELRPGDRVVDMATGTADVAILISQELAKLESRGGDTMPGSDVPAVIGIDPSANMLDVGRKKAADAGLSSRVVLQIGDAQDLSDIADGSVDKV 501
            LGSG MFDA+A  YD +NK++SLGLD  WR  +I+GLEL+ GD+V+D+ATGTADVA+L ++        GG          V GIDPSA ML +G +K A  GL S V L +GDAQ + ++A  SVDK+
Sbjct:   56 LGSGLMFDAVAKHYDRMNKLMSLGLDQSWRWFLIEGLELQEGDKVLDLATGTADVAVLAAEAFLARNWTGGQ---------VWGIDPSAGMLRIGEEKIAAKGLGSVVRLTLGDAQAMGEVASDSVDKI 175          
BLAST of mRNA_M-pyrifera_M_contig12020.4167.1 vs. uniprot
Match: A0A7S2XAZ6_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2XAZ6_9EUKA)

HSP 1 Score: 122 bits (305), Expect = 4.410e-31
Identity = 74/154 (48.05%), Postives = 94/154 (61.04%), Query Frame = 1
Query:   40 LVACFAFAVMYGGQQSKHQGGGEYQLGSGKMFDAIAPRYDLINKVISLGLDMQWRRAMIDGLELRPGDRVVDMATGTADVAILISQELAKLESRGGDTMPGSDVPAVIGIDPSANMLDVGRKKAADAGLSSRVVLQIGDAQDLSDIADGSVDKV 501
            L+A   FA   G + +   GG    LGSG MFD I  RYDLIN+V+SLG+D  WRR ++  LELR GD V+D+ATGTADVAIL +Q             PG+ V   +GIDPSA M+  GR+K     L  +V L++GDA +L DI  GS DK+
Sbjct:   11 LLAIALFACTLGAEDTCDVGG--ETLGSGAMFDKIFERYDLINRVMSLGMDQSWRRELVQALELRRGDSVLDLATGTADVAILEAQ-----------AEPGAKV---LGIDPSAKMVGRGREKVQGLDLGEQVTLRVGDAMNLQDIESGSFDKL 148          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12020.4167.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KFI5_9PHAE1.410e-7172.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTT5_ECTSI1.140e-5779.84Ubiquinone/menaquinone biosynthesis methyltransfer... [more]
A0A7S2V4B4_9STRA4.930e-3652.902-methoxy-6-polyprenyl-1,4-benzoquinol methylase, ... [more]
A0A0G4EH38_VITBC1.480e-3552.94Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A7S0DP24_9EUKA6.710e-3451.88Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
A0A835YHX6_9STRA2.440e-3350.74UbiE/COQ5 methyltransferase n=1 Tax=Tribonema minu... [more]
A0A7S2H0R6_9STRA3.840e-3255.832-methoxy-6-polyprenyl-1,4-benzoquinol methylase, ... [more]
F0XXU4_AURAN8.150e-3253.232-methoxy-6-polyprenyl-1,4-benzoquinol methylase, ... [more]
W7TJU2_9STRA1.850e-3151.16Ubiquinone menaquinone biosynthesis methyltransfer... [more]
A0A7S2XAZ6_9EUKA4.410e-3148.05Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12020contigM-pyrifera_M_contig12020:2778..9435 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score191.8
Seed ortholog evalue2.5e-46
Seed eggNOG ortholog2880.D8LTT5
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.2-octaprenyl-6-methoxy-1,4-benzoquinone methylase activity
EggNOG OGsCOG2226@1,KOG1540@2759
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size501
Cds size501
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12020.4167.1prot_M-pyrifera_M_contig12020.4167.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12020 2778..9435 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815721.578831-CDS-M-pyrifera_M_contig12020:2777..29481622815721.578831-CDS-M-pyrifera_M_contig12020:2777..2948Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12020 2778..2948 +
1692277537.9855886-CDS-M-pyrifera_M_contig12020:2777..29481692277537.9855886-CDS-M-pyrifera_M_contig12020:2777..2948Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12020 2778..2948 +
1622815721.5937753-CDS-M-pyrifera_M_contig12020:6025..60821622815721.5937753-CDS-M-pyrifera_M_contig12020:6025..6082Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12020 6026..6082 +
1692277537.996135-CDS-M-pyrifera_M_contig12020:6025..60821692277537.996135-CDS-M-pyrifera_M_contig12020:6025..6082Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12020 6026..6082 +
1622815721.6038947-CDS-M-pyrifera_M_contig12020:7307..74721622815721.6038947-CDS-M-pyrifera_M_contig12020:7307..7472Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12020 7308..7472 +
1692277538.0051095-CDS-M-pyrifera_M_contig12020:7307..74721692277538.0051095-CDS-M-pyrifera_M_contig12020:7307..7472Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12020 7308..7472 +
1622815721.6143599-CDS-M-pyrifera_M_contig12020:9327..94351622815721.6143599-CDS-M-pyrifera_M_contig12020:9327..9435Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12020 9328..9435 +
1692277538.0151515-CDS-M-pyrifera_M_contig12020:9327..94351692277538.0151515-CDS-M-pyrifera_M_contig12020:9327..9435Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12020 9328..9435 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12020.4167.1

>prot_M-pyrifera_M_contig12020.4167.1 ID=prot_M-pyrifera_M_contig12020.4167.1|Name=mRNA_M-pyrifera_M_contig12020.4167.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=167bp
MAPSPVVSAALTALVACFAFAVMYGGQQSKHQGGGEYQLGSGKMFDAIAP
RYDLINKVISLGLDMQWRRAMIDGLELRPGDRVVDMATGTADVAILISQE
LAKLESRGGDTMPGSDVPAVIGIDPSANMLDVGRKKAADAGLSSRVVLQI
GDAQDLSDIADGSVDKV
back to top

mRNA from alignment at M-pyrifera_M_contig12020:2778..9435+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12020.4167.1 ID=mRNA_M-pyrifera_M_contig12020.4167.1|Name=mRNA_M-pyrifera_M_contig12020.4167.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=6658bp|location=Sequence derived from alignment at M-pyrifera_M_contig12020:2778..9435+ (Macrocystis pyrifera P11B4 male)
ATGGCGCCCTCTCCTGTTGTGTCAGCAGCATTGACGGCCTTGGTGGCATG CTTTGCATTTGCTGTGATGTACGGAGGGCAGCAGTCAAAGCATCAGGGTG GTGGAGAATACCAGCTCGGGTCGGGGAAGATGTTCGACGCCATCGCCCCT CGATACGATCTCATCAACAAGGTGCGGCAGCAGCAGTAGAGTGGTACCAG AGAACGGAGTACAAATCGTTTCCTCACATGCTCATGTCCGGCTGATCAGA CTGCCCGGGAGGACGTTTTGTATCACTGCTGCTGCTCCTGTTGTCCTGTT GGTCTGTTTGTGTTTGCTACTGCACTGCTGCTACTGCCGTTGTGCTAACC AAACATCTTACATTTGCTGCGGCTGCAACCATACTGGTAGCTACTACTGT ACCTACTGTTTAGATGTTTTGACCGCGTATGTATGGCACGGCTCATGTGC ACAGGTGGCTACAAGCTACGCGTACCCGAATTACTTGTAGCAGTACCTTC GCCACCTACCGTGGTAACTGATAACTAGCCGTCAAGTCCACCCAACTCCC AGCCCGAACTTACAGACTCTACTTACCGCATACCGGCATTCGGATAGTCG GTGTCTCCGGGAAACGACTATTACGGGGGTCCATAGTTAATAGGACCTAT GGTATACATTAAAACCTATATATTTACCTATTTTTACTAACAAAATTTGG TCCCATTAACTATGGACCCCCGTAACAACAATTTGTCCGACTAATATGAT ACACGCAAGGTTCGTTTAGCTACGCCACAGCAGCCGTCCCGCGCACGCGC GGTGAAACAAGGAGACTCCTTTTTTTTCGTAATTTTCGGCCATACCAGAA GCGAACGCGACGTGGAATCGACGTCACAGCTTGACTGGTTTCCGGTGTGT CCGACCGTTCCCCCCTGACATTTACGTTGCGACACCACACCAGTCGACAA ATGATGGTGTCCAGGTCTCTGCGAGAGCTGCAGGACTCTCCAACTATTAA TAGTACTTTGGGTGTCATTATTTTTTTGGGGGGGGTATTGTTTCTGGCTT CCTTGACAGAAGAACACCATCCCACCCCTGCAGCACACCAAAACGGCGAT TCATAGAGCTGTGAGTCGGCAGGGTTTCGCGACTATTAATTAATGCGCAA TAGTCGATAGATACCGTTAGCCAACTAACTGACTTGAGTCAGGCGAGAGA AGCGAGCCGAGAACAGCCCTTCCCGGCCGAAGGGGTCCCATCCAAAAAAT GTAAATATACCCCGCATTCAATAATTCTTCAATCAAGTATGGAGACCCAA TAAGTCGGATAGTTGGTACCTCCGGGAAGCGACCACCTATTTGTCCGACT TATAACTAGTTGGCAACTTGAGTCGCGCCGGCCCACAGCTCTGGCTATTC GGCTTTTTTTGCTTGCCGACGACCGACCATTTCGGCCTACTGTCTGTAGC ACTCCCCTCATACGTATACATAGACATGGCGGTGTCCGGCTTCGCATCCT TCGGTTGCTGTTGTGGCGTGTGGGCAGAAGCCATCCACGACCTCAAACCG TTTTTCAAACAGGCTTGTATTTTGTGTTTTCGGTTTTGGTTTATTTCAAG CACCAAACTCGGGCCACACAGCTCTAGCTCTAGCCCTATTAGCTCTATTA ATAGTGCACTATTAGTAACATCTGGGGGGAAACTCCCTTACGTCACTGGG ACCATAAAATTCTGCACACCAAACAGGTCCACGTTGACGCGCGTGTTGTG CTTACAAAGAAACACAAAAAAAAATAACAGTTTTCTCGCAAAAAAAATCA ACAAATGATAGAAAATGAAGAGGGTCGAGGGATAATGCGCCCACTAACTG TACAACCTGTTAGCCTGTAGTGCAAAGAACGTGCGAGAAAAAAGGAGATG GGGGGGAGGGGGAAGTCCGGCCCGCGGCCTTAACTTGTGAATATATCTTG TGAGTATATCTCTACTACAGTATAATATGAAGACGACTCGATGATTAGGA ACCTGAGCGTGTAGAGTGGGGAGAACGGCCACATACAAGGCAATACTGCA GACACAAAGACGTTGCCTGCTATCTCCAGCATCACCAGCCACCAGTCATG TACCAAGGAAAATGAAATGGAACGCAAAAGGAACAATACAAACAGCAAGG AAAACAGAGAGGACAAACATATATTGTAAGACCAAAAATACATAGAGGGT ATATGCCACCAGTATACGTTCCATTGCGTTGAAGTAATTACCAGAGTTTT AAAAGTCACGAAAAAAAAGGGAAAAAAAAACGAAACAAGGAACACCAAAC GAAAAGGAGAGGAAGAGGTACCTGGCAACTTAACGGATGAAACAAAATCA CGACCGCTTCGACTTTTTATTGTCGCTCTAGACTACGGCAGCAACAGGAC CGAAACTCCTTTGAAAGAATGAAGCGTCCACTGCCTCAGGCCGGAGATTC TTGAAGACGGGTCCAGGGGGTTAGAGTCCCCCACGAGCTGACTGGGCGAG GAAATTACCCGGTTTGACATGAGTAGAGACAATGTGTTGCTGCCTACCCC TCCTCTCTGCAAAACCACAGCCATATATGGGAATGCTAGCCGGCTGGGGA TGGAGAGATAACCAGACCGCGTACGTGAAAGCCTTCGACCGTAAGTGTGA GGGCAGGGGTCTGCCTAAGGCTCTCCGTTCCCTGAAAGAAAAAAGCCGCA CTGAACCACGTTACACAGACAATGCGCCCCATACATTTTCCCGCCGGCAC TACTGTGTTCATTTTTGTACTATTTTAACGCTCGAATATTCGACAAGGCG GACAGATGAGATAACTGCTGTACAGATGACACAGATTATTTTCACGGATC TGCATCAGCTGTGCAAGTTTCCCACAGCAATGATTCTGCATGATTTGAAC CATCTGTACCTTTGATCTACAGGGTGCGGCCTTTTTTCCTTGAGTGTTGT GCCCTGTTGTGTGCCTTGGTTTGAAAGCACGTTGCTCTCTGATGTGGCAC GACCTGTGTGATCTATACACGTTTCTCTCGGGATGGTCTGCGGGGTACGC ATGACCTACACATATCATATGTCCCAACCCATTGGTCTGTACGATCTAGG TCAGGCGTGTGATCTATGCGTATGCCCCAACCCATGGGCATGTACGAACT AGGTCAGGCAGATCATGCTTTGTCAGACGTGCGGATTATTCTTGAACGTT TTATGGCTGCCACGGCGCGATGCTCCATCCTCCTTCATGCCCTGGTAGGT AATATCGCTGGGTTTGGACATGCAGTGGCGAAGAGCGATGATCGACGGGC TTGAGGTGAGACGTCGCTCTAAATTTCTGGGATGAATCTATATCGGTGTT TTCGGGTTGACGGTGCTGGCGGCCCCGCGCTCCAGGGCTGGGCTGTCGAG GATAACAATTAACACGCCGGACATATCACGATCTACATCATACAGATCCT AATCTACCGTTTTGAGGTGCTGTGCAGGATCTATATAGCACAGATCCAAC CAAGGAAACGTGTCCTAGGTCATGCAGATTATATAACTCCCACCCGGCAA CGTGAGCTATAGATCATACAGATCATACAGATCATACAGATCAGGAAACA TATCTATATCCTGAAATACGTAGGTAATAAAGTGGCAATGACCTGTAGAT GATCTGTCTGAGGTGTGCAGCATTTTCGGGTTTGTTTTATTCGTGCTTGG CACCGTCCGCGCACACACGCTGTTGTCAGTATCTACAGATTTTTCTCTCT TTGTGCCTGCCGGCCCCTCTCTGTGTATCTGTCTCTGTCCGTCCCACGCT CTTTCTCTCTCTGTTTACCCTCCCCCGTCCCCCCGTCCCCGTGATAATGA GTACACCCCCGTCCCCGCTTCTCTCTCTCTCTCTCGCTCTTTCCCTCTTT TTTCGCTCTCTCCCTCTTCCTCACTCTCCAACCCTGGCTTATCTCTCCCT GTCATCTTCATCAGAAACAACGGGAAGAGCGTTAAAGCTCGGAAAGCACG ACTTTAGTGATGACGATGACATGAACAATACCGATAACGTGAACGATAAC GATATCGATGACAGTAACGATAACGATATCGATGACAGCAACGATAACGA TAACGATATCGACGACAGGAACGATAATGAGATCGATATCGATGGCAACG ACGATAATGATAACTATATCGATGACAACAACGATAATGATAACATTATC GATGCCAACAACAATAACGATATCGATGACAACAATGATACCTATAGCGA TATCGATGACAAAAACGATGATGATAACGATATCGAAGACAGCAACGATA CTGATAGCGATTACAATAACGACGACGATAGCAATCACGAAAAATCTCAC CAACGACAAAAGCGATAGCGATGTTTCAGCAAATGACGAGAATGTCAGCA ACAACACCAACAAACAACGAAAACCACAAACACCACCACACACTCATCGC AAACCAAAACCGCACACCCACCCATGCCGCACTAAACACGTCTCCCCTCT GCTCTGCCCCACCCACGTCCTAAACGTTAGCTCCGGCCGGGAGATCGAGT TGTCGACATGGCCACCGGAACCGCCGATGTGGCAATCCTGATCTCTCAGG AGCTGGCCAAGCTGGAGTCGCGCGGCGGGGACACCATGCCGGGATCGGAC GTCCCCGCGGTGATTGGAATCGACCCCAGCGCCAACATGCTTGACGTGAG CACGCTTCCTTGTGTTTCAATAGGTTACAAACATACAAGTAGCAGGGCTG TGAAGTTGGCTGACTAAGTGTCGCCGACTAGGCATTTTAGTTGGTCAGGT ATTGCAGTAACTAGGGCTGTGAGTTGGCTGGCTAGAAGTCGCCGACTAGT CGTTTAGTTGGCTAGGTATTGCAGTAGATTTTTATGGCTGGCTATAACTC GGCGACTAGTTATCAGTTGGCTAGGTATTACAGCAGTGGATTGTTGTGGC TGTTTATTTGTCGCCGGCTAGTTACTAGCTGGCTAGGTATTGCAGTAGGT TTTCATGGCTGGCTGTAAGTCGCCGACCAGTCGTGTAACTGGCTAGCTTG GCTCGGCTCGAGTGTTTTTTATTACTCTAGCGGGTTAGTTGGATTACTTC CCCACCCAAATATTGCGAGGGGGGGGGGGCATAGCAACCGGAGCCCACAA TGGACTCAAAAACCACGTATCCCCCTGTGTGTACACAACCATGTTTAATT GTGATTACTATGTTCCCCCGCAAGAGTAACGGCCCGTAACGTCCGGGTAA CTAACTAACCAACGGCCCTAACAAACACAGTACGTACGCGACAAAACCTC TTGACCCCCATTTAGAACTACTAGTAACTGCCTCTTGCACGTTTTTTTTG TTTTTTTTGTTTTTCGTTTTTGGGGACAATCTGAGAGTATTTTGGAAGTA GTGTAGGATGTTTTTTTTATAGTGTTTCTACGAGCTGACATGGTTAGAAA TCTTGACCAAATAATGACTCGTAAACATCTGGAGCCTTCACGGATTATGA CCCGACCCGCGGATCGGGTCAGGAGGTCTTCAAAATCTCACGAGTCGTGT TGGGTCGGGTCGGGTCGGGTCGGGTCGGGTCCGGTCCGGCCCGGTCCGGT CGGGTCGGGTTGAGTCGAGTCGGGTCGAGTCGAGCCGAGTCGAGCCGATT CGAGTCGAGTCGAGCTCGGTCGGGTCCGGTCAAGTCGAGTCGAGTCGAGT CGAGTCGAGTCGAATCGAATCGAGTCGAGTCCGGCCGGGTTCGGTCGGGT CGGGTCAGGAGGCTTTCAAAGTCTCACGGGTCGGGCCAGGCCGACCCGCG AGGTTTGACCTGACCCATGAGGGACATGTACGGTTTTTGATTTCCACGAT GGGTTCTGATTCCTGTGTATTACTATGTATTCCTACGGCCCCCCGTAATA GTCAAAAGGTTTAAAGTCTCTTATTTTTGGCCAGGCTCATTTTCTCATGC CTTGGCAGGGGGTGTTCTGTCCTATCAGTATTGTTTGGTCGGCTTCCTCA TGACGCATTTTCAGCCCGCATCACGAATACACCGCTGATGAGGGACACAC GTTTTGTTTTTTTTCATGGCTCTATACTGGAACGACCTGTGCACTTGTCC GAAGAACCAACATAACGTTGGTTGCAATCGAATCGCTGGCCGGTGCGGTG CATCAGATGCGCTTGGTTCGATCTAATCGCTGGCCAGTGTAACGTAACGC ATCGATTTGTTCTATCTGGTCTGTTCGCTGACCAGTGCGGCGCATCGAAC AGTCCACACCTTGGAACAGGTCAACGATTCCTACTTTGCGATCTAGATCT TTCAGGGCAAACATATTCATCCCTGATCTGTATGATCTGTATGATCTGTA TGATCTGTATGATCTATAGTTCATGTTGCCGAGTGGGACCCGTATATCCT GTATCATCTACTGTAGTTGTTGGGTTGCATGTGCGCTAGACAGATGCTGC ACAGCATATCGTAACGGCGGTTGAGGAACTAGATGATCTAGATCGTGATC TGACTGTCCGAGGTCGGCAAAATTCGAACTGCACCGCTCGCCCCTCTCAG GTGGGGCGAAAAAAAGCAGCGGATGCCGGCCTTTCCTCGAGGGTGGTGCT TCAAATCGGAGACGCTCAAGACCTGTCCGACATCGCCGACGGATCTGTTG ACAAGGTA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig12020:2778..9435+

>mRNA_M-pyrifera_M_contig12020.4167.1 ID=mRNA_M-pyrifera_M_contig12020.4167.1|Name=mRNA_M-pyrifera_M_contig12020.4167.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1002bp|location=Sequence derived from alignment at M-pyrifera_M_contig12020:2778..9435+ (Macrocystis pyrifera P11B4 male)
ATGGCGCCCTCTCCTGTTGTGTCAGCAGCATTGACGGCCTTGGTGGCATG
CTTTGCATTTGCTGTGATGTACGGAGGGCAGCAGTCAAAGCATCAGGGTG
GTGGAGAATACCAGCTCGGGTCGGGGAAGATGTTCGACGCCATCGCCCCT
CGATACGATCTCATCAACAAGATGGCGCCCTCTCCTGTTGTGTCAGCAGC
ATTGACGGCCTTGGTGGCATGCTTTGCATTTGCTGTGATGTACGGAGGGC
AGCAGTCAAAGCATCAGGGTGGTGGAGAATACCAGCTCGGGTCGGGGAAG
ATGTTCGACGCCATCGCCCCTCGATACGATCTCATCAACAAGGTAATATC
GCTGGGTTTGGACATGCAGTGGCGAAGAGCGATGATCGACGGGCTTGAGG
TAATATCGCTGGGTTTGGACATGCAGTGGCGAAGAGCGATGATCGACGGG
CTTGAGCTCCGGCCGGGAGATCGAGTTGTCGACATGGCCACCGGAACCGC
CGATGTGGCAATCCTGATCTCTCAGGAGCTGGCCAAGCTGGAGTCGCGCG
GCGGGGACACCATGCCGGGATCGGACGTCCCCGCGGTGATTGGAATCGAC
CCCAGCGCCAACATGCTTGACCTCCGGCCGGGAGATCGAGTTGTCGACAT
GGCCACCGGAACCGCCGATGTGGCAATCCTGATCTCTCAGGAGCTGGCCA
AGCTGGAGTCGCGCGGCGGGGACACCATGCCGGGATCGGACGTCCCCGCG
GTGATTGGAATCGACCCCAGCGCCAACATGCTTGACGTGGGGCGAAAAAA
AGCAGCGGATGCCGGCCTTTCCTCGAGGGTGGTGCTTCAAATCGGAGACG
CTCAAGACCTGTCCGACATCGCCGACGGATCTGTTGACAAGGTAGTGGGG
CGAAAAAAAGCAGCGGATGCCGGCCTTTCCTCGAGGGTGGTGCTTCAAAT
CGGAGACGCTCAAGACCTGTCCGACATCGCCGACGGATCTGTTGACAAGG
TA
back to top