mRNA_M-pyrifera_M_contig12019.4164.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12019.4164.1
Unique NamemRNA_M-pyrifera_M_contig12019.4164.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12019.4164.1 vs. uniprot
Match: D7FMS7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS7_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 7.610e-17
Identity = 42/92 (45.65%), Postives = 60/92 (65.22%), Query Frame = 1 
Query:   10 VDVMSVLAGLLS-NQYAFFAEVSKDWSNAWGKQAKTTRAVTPDTSVSQLHWSFDAGLTKSPAICEQIAEHCGLDILRYAHSNGCSLSEEACF 282
            VD++S +   +  NQY FFA VS+ W + WGK+   T+A+T DTSVSQL  SF+ GL ++ A+CE +A    LD+LR A + GC  +E  C+
Sbjct:    9 VDIVSTVGEFVDDNQYLFFASVSRGWRDVWGKRPTVTKALTADTSVSQLSLSFECGLRRTAAVCETVAGLGRLDLLRRARAMGCPWNENTCY 100
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BLAST of mRNA_M-pyrifera_M_contig12019.4164.1 vs. uniprot
Match: D8LDD9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDD9_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 2.570e-11
Identity = 42/99 (42.42%), Postives = 58/99 (58.59%), Query Frame = 1 
Query:    1 QSNVDVMSVLAGLL-SNQYAFFAEVSKDWSNAWGKQAKTTRAVTPDTSVSQLHWSFDAGLTKS-PAICEQIAEHCGLDILRYAHSNGCSLSEEACFKAA 291
            Q+  DV+S  +  +  +Q+ FFA VS+ W  AW  +  +TRA+TPDTS SQL  S D GL+    A+C  IA    LD+LR A + G    +  C+KAA
Sbjct:    6 QATADVISHASEFVHDDQFLFFASVSRAWRGAWRGRPTSTRAITPDTSPSQLRHSVDCGLSPGGTAVCTAIASLGRLDLLRAARALGFRWDKMTCWKAA 104
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12019.4164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMS7_ECTSI7.610e-1745.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LDD9_ECTSI2.570e-1142.42Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12019contigM-pyrifera_M_contig12019:3536..5020 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size756
Cds size738
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12019.4164.1prot_M-pyrifera_M_contig12019.4164.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12019 3536..5002 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815721.4116833-CDS-M-pyrifera_M_contig12019:3535..40031622815721.4116833-CDS-M-pyrifera_M_contig12019:3535..4003Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12019 3536..4003 -
1692277537.899604-CDS-M-pyrifera_M_contig12019:3535..40031692277537.899604-CDS-M-pyrifera_M_contig12019:3535..4003Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12019 3536..4003 -
1622815721.4222577-CDS-M-pyrifera_M_contig12019:4732..50021622815721.4222577-CDS-M-pyrifera_M_contig12019:4732..5002Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12019 4733..5002 -
1692277537.9171038-CDS-M-pyrifera_M_contig12019:4732..50021692277537.9171038-CDS-M-pyrifera_M_contig12019:4732..5002Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12019 4733..5002 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815721.4318318-UTR-M-pyrifera_M_contig12019:5002..50201622815721.4318318-UTR-M-pyrifera_M_contig12019:5002..5020Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12019 5003..5020 -
1692277537.9328568-UTR-M-pyrifera_M_contig12019:5002..50201692277537.9328568-UTR-M-pyrifera_M_contig12019:5002..5020Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12019 5003..5020 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12019.4164.1

>prot_M-pyrifera_M_contig12019.4164.1 ID=prot_M-pyrifera_M_contig12019.4164.1|Name=mRNA_M-pyrifera_M_contig12019.4164.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=246bp
MSVLAGLLSNQYAFFAEVSKDWSNAWGKQAKTTRAVTPDTSVSQLHWSFD
AGLTKSPAICEQIAEHCGLDILRYAHSNGCSLSEEACFKAAAKGGHFELL
EWARSDGCSWDEATCASAAGGGHFEVLKWARRSGCPWNGGTCAGAASVGH
FKMLKWARRNGCPWDGDTCTAAAGGGRLDILRWARAEGCPWDSNTCSEAA
RFGHLEVLEWARSNGCPWDERTCSSAADAGRLDILQWARRGGCPWD
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mRNA from alignment at M-pyrifera_M_contig12019:3536..5020-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12019.4164.1 ID=mRNA_M-pyrifera_M_contig12019.4164.1|Name=mRNA_M-pyrifera_M_contig12019.4164.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1485bp|location=Sequence derived from alignment at M-pyrifera_M_contig12019:3536..5020- (Macrocystis pyrifera P11B4 male)
CAAAGCAACGTGGACGTTATGAGCGTGCTGGCGGGACTGCTCTCCAACCA
GTACGCGTTTTTCGCGGAGGTGTCAAAGGACTGGAGCAACGCTTGGGGCA
AGCAAGCGAAGACCACGCGAGCCGTAACGCCGGACACCTCTGTATCTCAG
CTGCACTGGAGCTTCGACGCCGGCCTCACGAAGAGTCCAGCCATATGCGA
ACAGATCGCCGAACACTGCGGCCTTGACATTCTGCGGTACGCCCACTCGA
ACGGATGCTCGTTGAGCGAGGAGGCATGCTTCAAGGCGGTGGCCCGGGGC
GATATGGAAATGATCCAGTGGGGACTCGACCAGAACTGCGGCTGGCGTGA
GGCCCTGTGCAAAGCGGCTGCGGCCGTGGGAAACCTGCACATTTTGAAGT
GGGCACGCGCTATTGGCTGTCCTTGGGGCAATTCCACGTGCTCCTCCGCT
GCCCGCTCAGGGCATCTCGCTATTCTGCAGTGGGCCCGGTCCGAGGATTG
TCCTTGGGGTGACCGAACATGCTGGAGCGCGGCGAGGGGTGGCCATCTTG
ACGTCCTTCAGTGGGTGCGAGAAGAGAGGTGTCGTTGGGACGATCAGACG
TGCGCGGCTGCTGCCATCGACGGGCATCTGGAGCTGATTCAGTGGGCAAG
AGATGACGGCGCTCGTTTGGGATACCGCGTGGCGTACTGGGCTGCCGCGG
GGGGACACTTGGACCTGCTTCGGTGGGCGACGGCTCAAGGGTGCCCCGGG
GGACGCGAAGGCTTCTCGGCCGCTACAGAAAACGGGCATCTGGATACGTT
GAAGTGGATGATTGATCACGGCTGCCGCTGGCCAGACGAGGCCAAGGCCA
TCGCAGCTCGAAATGGGCACCTTCACATTTTGGAGTGGATGCAGGCCAGC
CCCCACGCCTTCGAAAACCATGGTGTGTGCAAGGCGGCTGCTACCGGAGG
CCACATGCATGTGCTACAGTGGGCCCGAGAAAATGAAATGTTCTCGCCGG
TCGATGTCTGCACCGAGGCAGCGAAGGGAGGGCATTTCGAGCTACTCGAG
TGGGCACGGAGTGACGGCTGCTCTTGGGACGAAGCCACGTGCGCCAGTGC
GGCCGGGGGGGGGCATTTCGAGGTTCTCAAGTGGGCCCGGCGTAGCGGTT
GCCCCTGGAATGGTGGTACCTGTGCCGGGGCAGCCTCGGTCGGCCACTTC
AAAATGCTCAAATGGGCCCGGCGCAACGGCTGCCCCTGGGACGGAGACAC
TTGCACCGCTGCCGCCGGGGGGGGGCGGTTGGACATACTGCGGTGGGCGC
GGGCGGAAGGCTGTCCCTGGGATAGTAACACCTGTTCCGAAGCAGCCAGG
TTCGGCCACTTAGAAGTGCTTGAATGGGCTCGGTCTAACGGCTGCCCCTG
GGACGAAAGGACGTGCTCTAGTGCCGCCGACGCTGGTCGCTTGGACATAC
TGCAATGGGCACGGAGAGGAGGCTGCCCGTGGGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12019:3536..5020-

>mRNA_M-pyrifera_M_contig12019.4164.1 ID=mRNA_M-pyrifera_M_contig12019.4164.1|Name=mRNA_M-pyrifera_M_contig12019.4164.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1476bp|location=Sequence derived from alignment at M-pyrifera_M_contig12019:3536..5020- (Macrocystis pyrifera P11B4 male)
ATGAGCGTGCTGGCGGGACTGCTCTCCAACCAGTACGCGTTTTTCGCGGA
GGTGTCAAAGGACTGGAGCAACGCTTGGGGCAAGCAAGCGAAGACCACGC
GAGCCGTAACGCCGGACACCTCTGTATCTCAGCTGCACTGGAGCTTCGAC
GCCGGCCTCACGAAGAGTCCAGCCATATGCGAACAGATCGCCGAACACTG
CGGCCTTGACATTCTGCGGTACGCCCACTCGAACGGATGCTCGTTGAGCG
AGGAGGCATGCTTCAAGGCGATGAGCGTGCTGGCGGGACTGCTCTCCAAC
CAGTACGCGTTTTTCGCGGAGGTGTCAAAGGACTGGAGCAACGCTTGGGG
CAAGCAAGCGAAGACCACGCGAGCCGTAACGCCGGACACCTCTGTATCTC
AGCTGCACTGGAGCTTCGACGCCGGCCTCACGAAGAGTCCAGCCATATGC
GAACAGATCGCCGAACACTGCGGCCTTGACATTCTGCGGTACGCCCACTC
GAACGGATGCTCGTTGAGCGAGGAGGCATGCTTCAAGGCGGCAGCGAAGG
GAGGGCATTTCGAGCTACTCGAGTGGGCACGGAGTGACGGCTGCTCTTGG
GACGAAGCCACGTGCGCCAGTGCGGCCGGGGGGGGGCATTTCGAGGTTCT
CAAGTGGGCCCGGCGTAGCGGTTGCCCCTGGAATGGTGGTACCTGTGCCG
GGGCAGCCTCGGTCGGCCACTTCAAAATGCTCAAATGGGCCCGGCGCAAC
GGCTGCCCCTGGGACGGAGACACTTGCACCGCTGCCGCCGGGGGGGGGCG
GTTGGACATACTGCGGTGGGCGCGGGCGGAAGGCTGTCCCTGGGATAGTA
ACACCTGTTCCGAAGCAGCCAGGTTCGGCCACTTAGAAGTGCTTGAATGG
GCTCGGTCTAACGGCTGCCCCTGGGACGAAAGGACGTGCTCTAGTGCCGC
CGACGCTGGTCGCTTGGACATACTGCAATGGGCACGGAGAGGAGGCTGCC
CGTGGGATGCAGCGAAGGGAGGGCATTTCGAGCTACTCGAGTGGGCACGG
AGTGACGGCTGCTCTTGGGACGAAGCCACGTGCGCCAGTGCGGCCGGGGG
GGGGCATTTCGAGGTTCTCAAGTGGGCCCGGCGTAGCGGTTGCCCCTGGA
ATGGTGGTACCTGTGCCGGGGCAGCCTCGGTCGGCCACTTCAAAATGCTC
AAATGGGCCCGGCGCAACGGCTGCCCCTGGGACGGAGACACTTGCACCGC
TGCCGCCGGGGGGGGGCGGTTGGACATACTGCGGTGGGCGCGGGCGGAAG
GCTGTCCCTGGGATAGTAACACCTGTTCCGAAGCAGCCAGGTTCGGCCAC
TTAGAAGTGCTTGAATGGGCTCGGTCTAACGGCTGCCCCTGGGACGAAAG
GACGTGCTCTAGTGCCGCCGACGCTGGTCGCTTGGACATACTGCAATGGG
CACGGAGAGGAGGCTGCCCGTGGGAT
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