mRNA_M-pyrifera_M_contig120171.4159.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120171.4159.1
Unique NamemRNA_M-pyrifera_M_contig120171.4159.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig120171.4159.1 vs. uniprot
Match: A0A1E5WH13_9POAL (Uncharacterized protein n=1 Tax=Dichanthelium oligosanthes TaxID=888268 RepID=A0A1E5WH13_9POAL)

HSP 1 Score: 73.6 bits (179), Expect = 6.830e-15
Identity = 36/80 (45.00%), Postives = 50/80 (62.50%), Query Frame = 1 
Query:    1 RTPDHSKWVGLFQCKQDFIDLVEVGIP-----LASRVAWLLAADGC-EVFYRGAIHGKFIVASPVPQERTPSYSLLFADV 222
            RTPDH+KW+G F  KQDFID+VE+        + + +  L+ +  C +  +RGA+ GK IV  P+P ER P + LLF DV
Sbjct:   65 RTPDHTKWIGSFSSKQDFIDVVELFASSFMKRMFTGIICLIPSISCWQAIFRGAMKGKLIVPCPLPPERIPKFQLLFKDV 144
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BLAST of mRNA_M-pyrifera_M_contig120171.4159.1 vs. uniprot
Match: A0A7N2LHH1_QUELO (Uncharacterized protein n=3 Tax=Quercus lobata TaxID=97700 RepID=A0A7N2LHH1_QUELO)

HSP 1 Score: 70.1 bits (170), Expect = 2.410e-13
Identity = 38/73 (52.05%), Postives = 46/73 (63.01%), Query Frame = 1 
Query:    4 TPDHSKWVGLFQCKQDFIDLVEVGIPLASRVAWLLAADGCEVFYRGAIHGKFIVASPVPQERTPSYSLLFADV 222
            T DH+KWVG F  KQDFID+VEV I    ++    AA      YRGA+ GK IV+ P+P ER P Y LL+ DV
Sbjct:   99 TADHTKWVGAFHKKQDFIDVVEVCIA-PQKLNGFKAA-----IYRGAMKGKLIVSCPLPLERIPKYQLLYKDV 165
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BLAST of mRNA_M-pyrifera_M_contig120171.4159.1 vs. uniprot
Match: UPI0007754C24 (thioredoxin-like protein 4B isoform X2 n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=UPI0007754C24)

HSP 1 Score: 48.5 bits (114), Expect = 3.740e-5
Identity = 20/40 (50.00%), Postives = 26/40 (65.00%), Query Frame = 1 
Query:    4 TPDHSKWVGLFQCKQDFIDLVEVGIPLASRVAWLLAADGC 123
            TPDH+KW+G F  KQDFID+VE G P +S  + +     C
Sbjct:   99 TPDHTKWIGSFSSKQDFIDVVERGYPNSSSFSRMFEQGKC 138
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120171.4159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A1E5WH13_9POAL6.830e-1545.00Uncharacterized protein n=1 Tax=Dichanthelium olig... [more]
A0A7N2LHH1_QUELO2.410e-1352.05Uncharacterized protein n=3 Tax=Quercus lobata Tax... [more]
UPI0007754C243.740e-550.00thioredoxin-like protein 4B isoform X2 n=1 Tax=Ory... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120171contigM-pyrifera_M_contig120171:206..430 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.2
Seed ortholog evalue2.3e-10
Seed eggNOG ortholog112098.XP_008603964.1
Preferred nameTXNL4B
KEGG koko:K03243,ko:K12859
KEGG Pathwayko03013,ko03040,map03013,map03040
KEGG ModuleM00354
Hectar predicted targeting categoryother localisation
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000398,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008284,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0034622,GO:0034641,GO:0042127,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046540,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0065003,GO:0065007,GO:0070013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1990904
EggNOG free text desc.spliceosomal complex assembly
EggNOG OGsKOG3414@1,KOG3414@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03012,ko03041
Exons1
Model size225
Cds size225
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815721.2248588-CDS-M-pyrifera_M_contig120171:205..4301622815721.2248588-CDS-M-pyrifera_M_contig120171:205..430Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120171 206..430 +
1692277537.8342714-CDS-M-pyrifera_M_contig120171:205..4301692277537.8342714-CDS-M-pyrifera_M_contig120171:205..430Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120171 206..430 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120171.4159.1prot_M-pyrifera_M_contig120171.4159.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120171 206..430 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120171.4159.1

>prot_M-pyrifera_M_contig120171.4159.1 ID=prot_M-pyrifera_M_contig120171.4159.1|Name=mRNA_M-pyrifera_M_contig120171.4159.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=75bp
RTPDHSKWVGLFQCKQDFIDLVEVGIPLASRVAWLLAADGCEVFYRGAIH
GKFIVASPVPQERTPSYSLLFADV*
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mRNA from alignment at M-pyrifera_M_contig120171:206..430+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120171.4159.1 ID=mRNA_M-pyrifera_M_contig120171.4159.1|Name=mRNA_M-pyrifera_M_contig120171.4159.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=225bp|location=Sequence derived from alignment at M-pyrifera_M_contig120171:206..430+ (Macrocystis pyrifera P11B4 male)
AGAACGCCGGACCACAGCAAGTGGGTGGGCCTCTTCCAATGCAAACAAGA
CTTTATCGACTTGGTGGAGGTAGGGATTCCCCTGGCGAGCAGGGTCGCGT
GGCTGCTGGCGGCTGACGGCTGCGAGGTGTTCTACAGGGGCGCCATCCAC
GGAAAGTTCATCGTGGCTTCGCCAGTGCCGCAGGAGCGCACGCCGTCCTA
TTCGCTCCTCTTTGCAGATGTGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120171:206..430+

>mRNA_M-pyrifera_M_contig120171.4159.1 ID=mRNA_M-pyrifera_M_contig120171.4159.1|Name=mRNA_M-pyrifera_M_contig120171.4159.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=450bp|location=Sequence derived from alignment at M-pyrifera_M_contig120171:206..430+ (Macrocystis pyrifera P11B4 male)
AGAACGCCGGACCACAGCAAGTGGGTGGGCCTCTTCCAATGCAAACAAGA
CTTTATCGACTTGGTGGAGGTAGGGATTCCCCTGGCGAGCAGGGTCGCGT
GGCTGCTGGCGGCTGACGGCTGCGAGGTGTTCTACAGGGGCGCCATCCAC
GGAAAGTTCATCGTGGCTTCGCCAGTGCCGCAGGAGCGCACGCCGTCCTA
TTCGCTCCTCTTTGCAGATGTGTGAAGAACGCCGGACCACAGCAAGTGGG
TGGGCCTCTTCCAATGCAAACAAGACTTTATCGACTTGGTGGAGGTAGGG
ATTCCCCTGGCGAGCAGGGTCGCGTGGCTGCTGGCGGCTGACGGCTGCGA
GGTGTTCTACAGGGGCGCCATCCACGGAAAGTTCATCGTGGCTTCGCCAG
TGCCGCAGGAGCGCACGCCGTCCTATTCGCTCCTCTTTGCAGATGTGTGA
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