mRNA_M-pyrifera_M_contig120166.4158.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig120166.4158.1
Unique NamemRNA_M-pyrifera_M_contig120166.4158.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig120166.4158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig120166contigM-pyrifera_M_contig120166:211..528 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score62.8
Seed ortholog evalue1.1e-07
Seed eggNOG ortholog710686.Mycsm_04292
Hectar predicted targeting categoryother localisation
EggNOG OGs2EBHJ@1,2HAA5@201174,335I2@2
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size318
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815721.187728-CDS-M-pyrifera_M_contig120166:210..5281622815721.187728-CDS-M-pyrifera_M_contig120166:210..528Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120166 211..528 -
1692277537.824008-CDS-M-pyrifera_M_contig120166:210..5281692277537.824008-CDS-M-pyrifera_M_contig120166:210..528Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig120166 211..528 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig120166.4158.1prot_M-pyrifera_M_contig120166.4158.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig120166 211..528 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig120166.4158.1

>prot_M-pyrifera_M_contig120166.4158.1 ID=prot_M-pyrifera_M_contig120166.4158.1|Name=mRNA_M-pyrifera_M_contig120166.4158.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=106bp
NAASIVSKAAEIAHANLGDSNERLYANPRLLKGSVEDGSWADTPILHCYL
AGLLAGGRSEGGVDDLNVTWMAVVNGMSSLEVQLHHYAYRTFAECAKSRG
LLVTEI
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mRNA from alignment at M-pyrifera_M_contig120166:211..528-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig120166.4158.1 ID=mRNA_M-pyrifera_M_contig120166.4158.1|Name=mRNA_M-pyrifera_M_contig120166.4158.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=318bp|location=Sequence derived from alignment at M-pyrifera_M_contig120166:211..528- (Macrocystis pyrifera P11B4 male)
AACGCCGCGAGCATTGTCTCGAAGGCTGCCGAGATTGCTCATGCCAATCT
TGGCGACAGCAACGAACGGCTCTACGCGAATCCAAGGCTGTTGAAGGGCT
CGGTCGAGGATGGCAGCTGGGCGGATACCCCGATCCTCCATTGCTATCTG
GCGGGACTGCTTGCCGGTGGCCGCTCGGAGGGAGGCGTGGACGATCTCAA
CGTCACTTGGATGGCCGTTGTGAACGGGATGAGCTCGTTGGAAGTTCAAC
TCCACCACTACGCGTACCGCACATTCGCTGAATGCGCGAAGAGTCGTGGA
CTACTGGTCACCGAGATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig120166:211..528-

>mRNA_M-pyrifera_M_contig120166.4158.1 ID=mRNA_M-pyrifera_M_contig120166.4158.1|Name=mRNA_M-pyrifera_M_contig120166.4158.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig120166:211..528- (Macrocystis pyrifera P11B4 male)
AACGCCGCGAGCATTGTCTCGAAGGCTGCCGAGATTGCTCATGCCAATCT
TGGCGACAGCAACGAACGGCTCTACGCGAATCCAAGGCTGTTGAAGGGCT
CGGTCGAGGATGGCAGCTGGGCGGATACCCCGATCCTCCATTGCTATCTG
GCGGGACTGCTTGCCGGTGGCCGCTCGGAGGGAGGCGTGGACGATCTCAA
CGTCACTTGGATGGCCGTTGTGAACGGGATGAGCTCGTTGGAAGTTCAAC
TCCACCACTACGCGTACCGCACATTCGCTGAATGCGCGAAGAGTCGTGGA
CTACTGGTCACCGAGATCAACGCCGCGAGCATTGTCTCGAAGGCTGCCGA
GATTGCTCATGCCAATCTTGGCGACAGCAACGAACGGCTCTACGCGAATC
CAAGGCTGTTGAAGGGCTCGGTCGAGGATGGCAGCTGGGCGGATACCCCG
ATCCTCCATTGCTATCTGGCGGGACTGCTTGCCGGTGGCCGCTCGGAGGG
AGGCGTGGACGATCTCAACGTCACTTGGATGGCCGTTGTGAACGGGATGA
GCTCGTTGGAAGTTCAACTCCACCACTACGCGTACCGCACATTCGCTGAA
TGCGCGAAGAGTCGTGGACTACTGGTCACCGAGATC
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